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Romain David
Romain DAVID, PhD, Océanography and data mining -
My work concerns large-scale observation and experimentation systems of terrestrial and marine (agro)ecosystems and information systems and the dissemination of biodiversity knowledge coupled with them. I am particularly interested in new methods of data mining and data representation in the form of graphs. This formalization of knowledge makes it possible to envisage the use of new methods to analyze heterogeneous data, to propose scientific questions emerging from the data (and not the reverse, which is the classical scientific approach), and to make Scenario proposals dependent on contextual variables that can be used in the area of decision support. I wish to continue to invest in the development of multidisciplinary research programs and partnerships involving scientists and public actors. FAIR data management and open science addict and "Data Management Plan with FAIR Compliance" evangelizer.
93%
Open access
101
Documents
Current affiliations
- 1042333
Researcher identifiers
romain-david
- ResearcherId : ABH-8335-2020
-
0000-0003-4073-7456
- Google Scholar : https://scholar.google.fr/citations?user=gI7BuJcAAAAJ&hl=fr
- IdRef : 233679359
- VIAF : 1194155284793087060771
- ResearcherId : http://www.researcherid.com/rid/ABH-8335-2020
Web site
- https://mastouille.fr/@RomainD
- https://sites.google.com/view/romain-david
Presentation
### Ingénieur de Recherche - Data Manager de [ERINHA AISBL](https://www.erinha.eu/) (European Research Infrastructure on Highly Pathogenic Agents)
* Développement du data management plan d'ERINHA
* Mise en place et développement du catalogue de données d'ERINHA,
* Développement d'un centre de ressource de données dans le cloud respectant les principes FAIR,
* Mise en place de procédures garantissant la sécurité des données, ainsi que les restrictions d'accès nécessaires, leur stockage et archivage et les méthodologies de transfert des données sensibles,
* Identification, déploiement et implémentation des outils web (VRE) et e-infrastructures pour le management des données de ERINHA.
* WP Leader du programme européen [ISIDORe](https://www.isidore-project.eu/)
* Task Leader du programme européen [By-COVID](https://by-covid.eu/)
* Co-chair du [R.D.A. IG SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/))
* Co-chair du [R.D.A. IG PDS](https://www.rd-alliance.org/groups/professionalising-data-stewardship-ig) (Professionnalising Data Stewardship Interest Group in [Research Data Alliance](https://www.rd-alliance.org/))
* Co-chair du [R.D.A. IG SD](https://www.rd-alliance.org/groups/sensitive-data-interest-group) (Sensitive Data Interest Group in [Research Data Alliance](https://www.rd-alliance.org/)
* Co-chair de la liste RDA France Santé -> pour s'inscrire à [RDA France Santé](https://listes.services.cnrs.fr/wws/subscribe/rda-france-sante)
* Co-chair de la liste "RDA France FAIR Data" -> pour s'inscrire à : [RDA France FAIR Data](https://listes.services.cnrs.fr/wws/subscribe/rda-france-fair)
* Member actif de [EOSC Task Force FAIR Metrics and Data Quality](https://www.eosc.eu/advisory-groups/fair-metrics-and-data-quality)
* Membre actif de FDO Forum sous groupe ["FDO type" et "FDO Sem"](https://fairdo.org/wg/fdo-sig/)
#### précédemment Ingénieur de Recherche à l'INRAE (Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement) Laboratoire Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie ([UMR MISTEA](https://www6.montpellier.inrae.fr/mistea))
- Interopération des plates-formes (Phenotyping Hybrid Information System) et animation des échanges entre les acteurs de différentes disciplines (concernant l’adoption, le choix et la mise en oeuvre d’ontologies et de normes notamment)
- Participation au développement des standards de domaine.
- Co-chair du [R.D.A. IG Group SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/))
#### précédemment PhD Océanographie - Fouille de données à l'Institut Ecologie et Environnement du CNRS
Institut Méditerranéen de Biodiversité et d'Ecologie marine et continentale ([IMBE UMR 7263](https://www.imbe.fr/))
- Initiateur et animateur du consortium [IndexMed ](http://www.indexmed.eu "Indexing for Mining Ecological and Environmental Data")devenu depuis [IndexMEED](http://www.indexmeed.eu/ "Indexing for Mining Ecological and Environmental Data")
- Co-chair du [R.D.A. IG Group SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/))
- WP Leader du programme européen [CIGESMED](http://www.cigesmed.eu "Coralligenous based Indicators to evaluate and monitor the Good Environmental Status of the MEDiterranean coastal waters")
- Administrateur de différentes bases de données concernant des systèmes d'observations côtiers
Domaine d’activité
------------------
Mes travaux concernent les systèmes d’observation et d'expérimentation à large échelle des (agro)écosystèmes terrestres et marins et les systèmes d'information et de la valorisation de la connaissance sur la biodiversité qui y sont couplés. Je m'intéresse particulièrement aux nouvelles méthodes de fouille de données et à la représentation des données sous forme de graphes (mono ou multilayers, mono ou pluripartites, sémantiques ou non). Cette formalisation de la connaissance permet d'envisager l'usage de nouvelles méthodes d'analyse de données hétérogènes, de proposer des questionnements scientifiques émergeant des données (et non l'inverse, qui est l'approche scientifique classique), et de faire des propositions de scenarios dépendant de variables de contextes utilisables dans le domaine de l'aide à la décision. Je souhaite continuer à m’investir dans le développement de programmes de recherche pluri voire transdisciplinaires et des partenariats associant scientifiques et acteurs publics. Je m'implique dans les initiatives et démarches pour la science ouverte aux niveaux européen et international (FAIRness literacy, Data Management Plan, FAIRisation training).
Thèmes et intérêts
------------------
Informatique dans le domaine de la biodiversité et de l'agronomie, bases de données, représentations des connaissances, gestion de données scientifiques, Plan de gestion de données, fouille de données, développement de communautés autour de la donnée, visualisation de données, dissémination, science ouverte, big data
Ecologie côtière, Macro-écologie, Benthos, écologie Marine, suivi de la Biodiversité, suivi des impacts environnementaux, Océanographie biologique, Restauration écologique, Gestion des ressources en Milieu marin, systèmes d’aide à la décision
Programmes de recherches récents et en cours
--------------------------------------------
En cours
- [ISIDORe](https://www.isidore-project.eu/) (Integrated Services for Infectious Diseases Outbreak Research) a pour objectif d’accroître la réactivité et la préparation de l'UE à toute menace épidémique en fournissant une très large gamme de services innovants et de haute qualité à toutes les communautés d'utilisateurs scientifiques ayant des projets dans le domaine des agents hautement pathogènes. Le consortium ISIDORe représente le plus grand instrument de recherche dédié à l'étude des pathogènes à haut risque jamais mis en place. Suite à l'appel à manifestation d'intérêt de l'incubateur de l'HERA sur les variantes du SARS‑CoV\_2, le projet ISIDORe (Integrated Services for Infectious Disease Outbreak Research) dirigé par ERINHA a été sélectionné comme l'une des premières actions d'Horizon Europe. Le consortium ISIDORe comprend 154 participants de 32 pays du monde entier et contribuera aux efforts de recherche sur les variants du SRAS-CoV-2 et tout autre agent pathogène à tendance épidémique, en assemblant un portefeuille intégré et complémentaire d'état de l'art, de services de pointe au profit de la communauté scientifique. (under CE grant agreement Nº101046133)
- [By-COVID](https://by-covid.eu/): Le monde a généré de grandes quantités de données en réponse à la pandémie de COVID-19, et en génère toujours plus. Ces données proviennent de nombreuses sources différentes, et les identifier, les connecter et les intégrer pour une analyse efficace reste un défi majeur. Le projet BeYond-COVID vise à rendre les données sur la COVID-19 accessibles aux scientifiques dans les laboratoires mais aussi à toute personne pouvant les utiliser, comme le personnel médical des hôpitaux ou les responsables gouvernementaux. Au-delà des données sur le SRAS-CoV-2, le projet fournira un cadre pour rendre les données d'autres maladies infectieuses ouvertes et accessibles à tous. (under CE grant agreement Nº101046203)
- [QUAMPO](https://quampo.recherche.univ-lr.fr/) (QUAlité des Milieux côtiers POrtuaire en haute-Corse) développe une méthode innovante de monitoring de la qualité des eaux basée sur des techniques d’écotoxicologie de mesure de biomarqueurs chez des invertébrés et à développer des outils pour les gestionnaires des ports.
- [EOSC Life](https://www.eosc-life.eu/) - EOSC-Life brings together the 13 Biological and Medical ‘ESFRI’ research infrastructures (BMS RIs) to create an open, digital and collaborative space for biological and medical research. The project will publish ‘FAIR’ data and a catalogue of services provided by participating RIs for the management, storage and reuse of data in the European Open Science Cloud (EOSC). (under CE grant agreement Nº824087)
- [PARSEC](http://parsecproject.org/) - The PARSEC project is designed to provide a unique opportunity for data and synthesis scientists to collaborate and exchange in real-time toward the goal of improving research outcomes, data sharing, and data reuse. It will also help pioneer new scientific and data science technologies aimed at improving both the management and conservation of global biodiversity.
- [Foosin](https://foosin.fr/en/foosin-project/) - project is working to facilitate the progressive implementation of FAIR principles by data managers and producers in agriculture and agri-food. Improved data management will facilitate interdisciplinarity and reproducibility of work while reducing data duplication. We are particularly interested in the application of FAIR principles to semantic resources (ontologies, thesauri…) which are themselves key elements for making data more FAIR (Principle I2).
- [TRAFIC](https://www.researchgate.net/project/Areas-of-potential-high-interaction-between-marine-traffic-and-marine-mammals-in-French-West-Indies) - Areas of potential high-interaction between marine traffic and marine mammals in French West Indies: this project aims at improving the knowledge on the pressure of maritime activities on the marine environment in the Caribbean Sea. In particular, a master internship focuses on studying the spatiotemporal co-occurrence between marine traffic and cetaceans.
Passés
- [Erinha Advance](https://www.erinha.eu/erinha-advance/) - ERINHA Research Infrastructure was successfully set up and has now entered into its operational phase. ERINHA-Advance is a H2020-funded project which aims to continue supporting the successful operation of the ERINHA Research Infrastructure to ensure its long-term sustainability. (under CE grant agreement Nº824061)
- [D2KAB](http://d2kab.mystrikingly.com/) - Data to Knowledge in Agronomy and Biodiveristy project create a framework to turn agronomy and biodiversity data into knowledge –semantically described, interoperable, actionable, open– and investigate scientific methods and tools to exploit this knowledge for applications in science & agriculture
- [EPPN2020 ](https://eppn2020.plant-phenotyping.eu/ "European Plant Phénotyping Network")- European Plant Phénotyping Network (Horizon 2020 research and innovation programme under grant agreement Nº731013)
- [IndexMEED](http://www.indexmed.eu "Indexing for Mining Ecological and Environmental Data") - Indexing for Mining Ecological and Environmental Data : www.indexmed.eu (Financement 2016 - [MI du CNRS](http://www.cnrs.fr/mi/ "Mission pour l'interdisciplinarité du CNRS"))
- GRAMINEES - GRAphe data Mining In Natural, Ecological and Environnemental Sciences (Financement [GDR MaDICS](http://www.madics.fr "Groupement de recherche : Masses de Données, Informations et Connaissances en Sciences"))
- EVACOR et EVACOR2 - EVAluation des services écosystémiques des habitats CORalligènes (1 et 2)
- [VIGI-GEEK](http://www.indexmed.eu/Defi-Imag-In.html "VIsualisation of Graph In transdisciplinary Global Ecology, Economy and Sociology data-Kernel") - VIsualisation of Graph In transdisciplinary Global Ecology, Economy and Sociology data-Kernel (Défi Imag'in, Financement [MI du CNRS](http://www.cnrs.fr/mi/ "Mission pour l'interdisciplinarité du CNRS"))
- [CHARLIE](http://www.indexmed.eu/Reponse-au-PEPS-blanc-Projet.html "CHAnger de Regard En Liant dans Indexmed l’Environnement et les Etoiles") - CHAnger de Regard En Liant dans Indexmed l’Environnement et les Etoiles (PEPS Blanc, Financement [INEE - CNRS](http://www.cnrs.fr/inee/ "Institut Ecologie et Environnement"))
- [CIGESMED ](http://www.cigesmed.eu "Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the MEDiterranean coastal waters")- Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the MEDiterranean coastal waters (ANR conventions n° 12-SEAS-0001-01, 02 and 03 for France; GSRT - 12SEAS-12-C2 for Greece; TUBITAK Project No: 112Y393 for Turkey)
- [DEVOTES](http://www.devotes-project.eu/ "DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status") - DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status www.devotes-project.eu (European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement n°308392)
- [Proteker](http://www.proteker.net "Effects of global change on the marine benthos and habitats in Kerguelen Islands. Establishment of a base line for ecological and genetic monitoring, protection and conservation") - Effects of global change on the marine benthos and habitats in Kerguelen Islands. Establishment of a base line for ecological and genetic monitoring, protection and conservation. www.proteker.net (Programme IPEV 1044)
Vous trouverez les slides des présentations orales - non acceptés dans hal sur researchgate : [Romain David sur ResearchGate](https://www.researchgate.net/profile/Romain_David "Romain David")
### Research fellow - Data Manager at [ERINHA AISBL](https://www.erinha.eu/) (European Research Infrastructure on Highly Pathogenic Agents)
- Developing a data management plan for ERINHA
- Implementing ERINHA data catalogue,
- Developing cloud-compatible, FAIR-compliant data resources,
- Ensuring data security, including restricting access to certain data as necessary, data recovery, secure storage and methodologies for the transfer of sensitive data,
- Identifying and implementing relevant e-tools and e-infrastructures for ERINHA data management
- WP Leader of the european program [ISIDORe](https://www.isidore-project.eu/)
- Task Leader of the european program [By-COVID](https://by-covid.eu/)
- Co-chair in [R.D.A. IG SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/))
- Co-chair in [R.D.A. IG PDS](https://www.rd-alliance.org/groups/professionalising-data-stewardship-ig) (Professionnalising Data Stewardship Interest Group in [Research Data Alliance](https://www.rd-alliance.org/))
- Co-chair in [R.D.A. IG SD](https://www.rd-alliance.org/groups/sensitive-data-interest-group) (Sensitive Data Interest Group in [Research Data Alliance](https://www.rd-alliance.org/)
- Co-chair of the list "RDA France Santé" -> Register here: [RDA France Santé](https://listes.services.cnrs.fr/wws/subscribe/rda-france-sante)
- Co-chair of the list "RDA France FAIR Data" -> Register here: [RDA France FAIR Data](https://listes.services.cnrs.fr/wws/subscribe/rda-france-fair)
- Member of the [EOSC Task Force FAIR Metrics and Data Quality](https://www.eosc.eu/advisory-groups/fair-metrics-and-data-quality)
- Membre of FDO Forum sous groupe ["FDO type" et "FDO Sem"](https://fairdo.org/wg/fdo-sig/)
#### before Research fellow at INRAE (Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement) [MISTEA laboratory](https://www6.montpellier.inrae.fr/mistea) (UMR Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie)
- Interoperability improvment for platforms (Phenotyping Hybrid Information System), ensure links between actors of different disciplines.
- Develop activities on the development, adoption, choice and implementation of ontologies and standards,
- Take part in the development of domain standards.
- Co-chair du [R.D.A. IG Group SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/))
#### before Ph.D. Océanography - Data mining at the Ecology and Environment Institute of the CNRS.
[IMBE (UMR 7263)](https://www.imbe.fr/) laboratory
- Initiator and moderator of the [IndexMed ](http://www.indexmed.eu "Indexing for Mining Ecological and Environmental Data")consortium which has since become [IndexMEED](http://www.indexmeed.eu/ "Indexing for Mining Ecological and Environmental Data")
- Co-chair of the [R.D.A. IG Group SHARC](https://www.rd-alliance.org/groups/sharing-rewards-and-credit-sharc-ig) (SHAring for Rewarding and Credits Interest Group in [Research Data Alliance](https://www.rd-alliance.org/))
- WP Leader of the European program [CIGESMED](http://www.cigesmed.eu "Coralligenous based Indicators to evaluate and monitor the Good Environmental Status of the MEDiterranean coastal waters"),
- Administrator of various databases for coastal observation systems.
Area of activity
------------------
My work concerns large-scale observation and experimentation systems of terrestrial and marine (agro)ecosystems and information systems and the dissemination of biodiversity knowledge coupled with them. I am particularly interested in new methods of data mining and data representation in the form of graphs. This formalization of knowledge makes it possible to envisage the use of new methods to analyze heterogeneous data, to propose scientific questions emerging from the data (and not the reverse, which is the classical scientific approach), and to make Scenario proposals dependent on contextual variables that can be used in the area of decision support. I wish to continue to invest in the development of multidisciplinary research programs and partnerships involving scientists and public actors. FAIR data management and open science addict and "Data Management Plan with FAIR Compliance" evangelizer.
Themes and interests
--------------------
Biodiversity Informatics, Databases, Distributed Systems, Knowledge Representation, Scientific Data Management, Data management plan, Data mining, Data Community Development, Data Visualization, Information Dissemination,
Coastal Ecology, Macro-ecology, Benthos, Marine Ecology, Biodiversity Assessment, Environmental Impact Assessment, Wildlife Ecology, Biological Oceanography, Ecological restoration, Natural Resource Management, Decision support systems
Recent and ongoing research programs
------------------------------------
Ongoing
- [ISIDORe](https://www.isidore-project.eu/) (Integrated Services for Infectious Diseases Outbreak Research) aims to increase EU’s responsiveness and preparedness to any epidemic threats by providing an impressive range of innovative, high quality services to all scientific User communities with projects in the field of high-consequence pathogens. The ISIDORe consortium represents the biggest research instrument dedicated to the study of high consequence pathogens ever set up. Following the HERA’s incubator call for expressions of interest on SARS‑CoV\_2 variants, the ERINHA-led project ISIDORe (Integrated Services for Infectious Disease Outbreak Research) was selected as one of the first Horizon Europe actions. The ISIDORe consortium includes 154 participants from 32 countries worldwide and will contribute to research efforts on the SARS-CoV-2 variants and any other epidemic-prone pathogen, by assembling an integrated and complementary portfolio of state-of-the-art, cutting-edge services for the benefit of the scientific community. (under CE grant agreement Nº101046133)
- [By-COVID](https://by-covid.eu/): The world has generated vast amounts of data in response to the COVID-19 pandemic, and is still generating more. This data comes from many different sources, and identifying, connecting and integrating it for effective analysis remains a challenge. The BeYond-COVID project aims to make COVID-19 data accessible to scientists in laboratories but also to anyone who can use it, such as medical staff in hospitals or government officials. Going beyond SARS-CoV-2 data, the project will provide a framework for making data from other infectious diseases open and accessible to everyone. (under CE grant agreement Nº101046203)
- [QUAMPO](https://quampo.recherche.univ-lr.fr/) (QUAlité des Milieux côtiers POrtuaire en Haute-Corse) is developing an innovative method for monitoring water quality based on ecotoxicology techniques for measuring biomarkers in invertebrates and developing tools for port managers.
- [EOSC Life](https://www.eosc-life.eu/) - EOSC-Life brings together the 13 Biological and Medical ‘ESFRI’ research infrastructures (BMS RIs) to create an open, digital and collaborative space for biological and medical research. The project will publish ‘FAIR’ data and a catalogue of services provided by participating RIs for the management, storage and reuse of data in the European Open Science Cloud (EOSC).
- [PARSEC](http://parsecproject.org/) - The PARSEC project is designed to provide a unique opportunity for data and synthesis scientists to collaborate and exchange in real-time toward the goal of improving research outcomes, data sharing, and data reuse. It will also help pioneer new scientific and data science technologies aimed at improving both the management and conservation of global biodiversity.
- [Foosin](https://foosin.fr/en/foosin-project/) - project is working to facilitate the progressive implementation of FAIR principles by data managers and producers in agriculture and agri-food. Improved data management will facilitate interdisciplinarity and reproducibility of work while reducing data duplication. We are particularly interested in the application of FAIR principles to semantic resources (ontologies, thesauri…) which are themselves key elements for making data more FAIR (Principle I2).
- [TRAFIC](https://www.researchgate.net/project/Areas-of-potential-high-interaction-between-marine-traffic-and-marine-mammals-in-French-West-Indies) - Areas of potential high-interaction between marine traffic and marine mammals in French West Indies: this project aims at improving the knowledge on the pressure of maritime activities on the marine environment in the Caribbean Sea. In particular, a master internship focuses on studying the spatiotemporal co-occurrence between marine traffic and cetaceans.
Recent
- [Erinha Advance](https://www.erinha.eu/erinha-advance/) - ERINHA Research Infrastructure was successfully set up and has now entered into its operational phase. ERINHA-Advance is a H2020-funded project which aims to continue supporting the successful operation of the ERINHA Research Infrastructure to ensure its long-term sustainability.
- [D2KAB](http://d2kab.mystrikingly.com/) - Data to Knowledge in Agronomy and Biodiveristy project create a framework to turn agronomy and biodiversity data into knowledge –semantically described, interoperable, actionable, open– and investigate scientific methods and tools to exploit this knowledge for applications in science & agriculture
- [EPPN2020 ](https://eppn2020.plant-phenotyping.eu/ "European Plant Phénotyping Network")- (UMR MISTEA part) European Plant Phénotyping Network (Horizon 2020 research and innovation programme under grant agreement No 731013)
- [IndexMeed ](http://www.indexmed.eu "Indexing for Mining Ecological and Environmental Data")- Indexing for Mining Ecological and Environmental Data : www.indexmed.eu (Funding 2016 - [MI du CNRS](http://www.cnrs.fr/mi/ "Mission pour l'interdisciplinarité du CNRS"))
- GRAMINEES - GRAphe data Mining In Natural, Ecological and Environnemental Sciences (Funding [GDR MaDICS](http://www.madics.fr "Groupement de recherche : Masses de Données, Informations et Connaissances en Sciences"))
- EVACOR et EVACOR2 - EVAluation des services écosystémiques des habitats CORalligènes (1 et 2)
- [VIGI-GEEK ](http://www.indexmed.eu/Defi-Imag-In.html "VIsualisation of Graph In transdisciplinary Global Ecology, Economy and Sociology data-Kernel")- VIsualisation of Graph In transdisciplinary Global Ecology, Economy and Sociology data-Kernel (Défi Imag'in, Funding [MI du CNRS](http://www.cnrs.fr/mi/ "Mission pour l'interdisciplinarité du CNRS"))
- [CHARLIE](http://www.indexmed.eu/Reponse-au-PEPS-blanc-Projet.html "CHAnger de Regard En Liant dans Indexmed l’Environnement et les Etoiles") - CHAnger de Regard En Liant dans Indexmed l’Environnement et les Etoiles (PEPS Blanc, Funding [INEE - CNRS](http://www.cnrs.fr/inee/ "Institut Ecologie et Environnement"))
- [CIGESMED ](http://www.cigesmed.eu "Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the MEDiterranean coastal waters")- Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the MEDiterranean coastal waters (ANR conventions n° 12-SEAS-0001-01, 02 and 03 for France; GSRT - 12SEAS-12-C2 for Greece; TUBITAK Project No: 112Y393 for Turkey)
- [DEVOTES ](http://www.devotes-project.eu/ "DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status")- DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status www.devotes-project.eu (European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement n°308392)
- [Proteker ](http://www.proteker.net "Effects of global change on the marine benthos and habitats in Kerguelen Islands. Establishment of a base line for ecological and genetic monitoring, protection and conservation")- Effects of global change on the marine benthos and habitats in Kerguelen Islands. Establishment of a base line for ecological and genetic monitoring, protection and conservation. www.proteker.net (Programme IPEV 1044)
You will find the slides of the oral presentations - not accepted in hal on researchgate: [Romain David on ResearchGate](https://www.researchgate.net/profile/Romain_David "Romain David")
Research domains
Emerging Technologies [cs.ET]
Databases [cs.DB]
Bioinformatics [q-bio.QM]
Ecosystems
Environmental and Society
Biodiversity and Ecology
Skills
Data Management Plan
RGPD
Semantic web
Ecology
coralligenous populations
benthic populations
inventories
determination
surveys
population monitoring
Botany
ethnobotany
cell and molecular biology
Univariate and multivariate statistics
graph-based data mining
distributed computing
Concepts of supervised or unsupervised learning
deep learning
Project management
communication
network animation
Scientific Diving
Web Development
Accessibility standards
webstack ontologies
Databases
Life Sciences
Publications
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Converging on a Semantic Interoperability Framework for the European Data Space for Science, Research and Innovation (EOSC)2nd Workshop on Ontologies for FAIR and FAIR Ontologies (Onto4FAIR), 9th Joint Ontology Workshops (JOWO 2023),, Cassia Trojahn; Luiz Olavo Bonino da Silva Santos; Giancarlo Guizzardi; Clement Jonquet, Jul 2023, Sherbrooke, Québec, Canada. ⟨10.5281/zenodo.8042997⟩
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Community ecology of coralligenous assemblages using a metabarcoding approach3rd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Specially Protected Areas Regional Activity Centre (SPA/RAC), Jan 2019, Antalya, Turkey. pp.41-45
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Analysis on the Graph Techniques for Data-mining and Visualization of Heterogeneous Biodiversity Data SetsComplexis 2017, Apr 2017, Porto, Portugal. pp.144 - 151, ⟨10.5220/0006379701440151⟩
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Strike-Alert: Towards Real-time, High Resolution Navigational Software for Whale AvoidanceSUSTECH 2017 : 5th annual IEEE Conference on Technologies for Sustainability, Nov 2017, Phoenix, United States. ⟨10.1109/SusTech.2017.8333534⟩
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Architecture, concepts et services d'un système d'indexation de données distribuées pour l'observation à large échelle en écologie marine32ème Conférence sur la Gestion de Données - Principes, Technologies et Applications, laboratoire d’Informatique et d’Automatique pour les Systèmes (LIAS), Nov 2016, POITIERS, France
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IndexMed projects: new tools using the CIGESMED DataBase on Coralligenous for indexing, visualizing and data mining based on graphs 8th International Congress on Environmental Modelling and Software, Toulouse, France, Sabine Sauvage, José-Miguel Sánchez-Pérez, Andrea Rizzoli (Eds.), Jul 2016, Toulouse, France. pp.32, ⟨10.5281/zenodo.6047140⟩
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CIGESMED. Protocols: how to implement a multidisciplinary approach on a large scale for coralligenous habitats surveysRAC/SPA 2nd Mediterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions, RAC/SPA, Oct 2014, Portorož, Slovenia. pp.66-71, ⟨10.13140/2.1.1895.0086⟩
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CIGESMED habitat's characterization: a simple ans reusable typology at the Mediterranean scaleRAC/ASP 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia. pp.211-212
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An ecosystem-based approach to assess the status of the Mediterranean coralligenous habitat.RAC/SPA 2nd Mediterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions, RAC/SPA, Oct 2014, Portorož Slovenia. pp.153-158
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AN INTEGRATED APPROACH TO EVALUATE AND MONITOR THE CONSERVATION STATE OF CORALLIGENOUS BOTTOMS: THE INDEX-COR METHODConference: 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia. ⟨10.13140/2.1.3180.6405⟩
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Preliminary assessment of macrobenthic assemblages of coralligenous habitats across the Mediterranean Sea2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions , RAC/ASP, Oct 2014, Portorož, Slovenia. pp.207-208
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CIGESMED: Coralligenous based indicators to evaluate and monitor the "good environmental statut" of the Mediterranean coastal waters, a SeasEra project2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia
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CIGESMED’s protocol and network (Coralligenous basEd. Indicators to evaluate and monitor the “Good Environmental Status” of Mediterranean coastal waters)5th International Symposium Monitoring of Mediterranean coastal areas: problems and measurement techniques, CNR-IBIMET Firenze, Jun 2014, Livorno, Italy. pp.828-843
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Improving data identification and tagging for more effective decision making in agricultureLeisa Armstrong. Improving Data Management and Decision Support Systems in Agriculture, 85, Burleigh Dodds Science Publishing, 2020, Series in Agricultural Science, 978-1-78676-340-2
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CIGESMED’s protocol and network (Coralligenous based Indicators to evaluate and monitor the “Good Environmental Status” of Mediterranean coastal waters)CNR-IBIMET Proceedings of Fifth International Symposium MONITORING OF MEDITERRANEAN COASTAL AREAS: PROBLEMS AND MEASUREMENT TECHNIQUES, , pp.828-843, 2014, 978-88-95597-19-5
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Zones côtières et développement durable : une équation à résoudreA. Euzen, L. Eymard, F. Gaill. Le devéloppement durable à découvert, Le devéloppement durable à découvert (Chapter: 2-22), CNRS editions, pp.96-97, 2013, 978-2-271-07896-4
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De la conception d'un système d'observation à large échelle au déploiement et à l'exploitation de son système d'information : application à l'observation des habitats coralligènes et à la colonisation de récifs artificiels (ARMS)Biodiversité et Ecologie. Aix Marseille Université, 2018. Français. ⟨NNT : ⟩
Theses
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Open data to support European pandemic preparedness BY-COVID learnings and policy recommendations after 18 months of cross-disciplinary collaboration2023, https://doi.org/10.5281/zenodo.7950479
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Report on identification of keystone species and processes across regional seas2014, pp.1-103. ⟨10.131140/2.1.2093.3929⟩
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