Romain David
- European Research Infrastructure on Highly Pathogenic Agents (ERINHA-AISBL)
Présentation
Responsabilités particulières Et anciennement: Institut Méditerranéen de Biodiversité et d'Ecologie marine et continentale (IMBE UMR 7263) Mes travaux concernent les systèmes d’observation et d'expérimentation à large échelle des (agro)écosystèmes terrestres et marins et les systèmes d'information et de la valorisation de la connaissance sur la biodiversité qui y sont couplés. Je m'intéresse particulièrement aux nouvelles méthodes de fouille de données et à la représentation des données sous forme de graphes (mono ou multilayers, mono ou pluripartites, sémantiques ou non). Cette formalisation de la connaissance permet d'envisager l'usage de nouvelles méthodes d'analyse de données hétérogènes, de proposer des questionnements scientifiques émergeant des données (et non l'inverse, qui est l'approche scientifique classique), et de faire des propositions de scenarios dépendant de variables de contextes utilisables dans le domaine de l'aide à la décision. Je souhaite continuer à m’investir dans le développement de programmes de recherche pluri voire transdisciplinaires et des partenariats associant scientifiques et acteurs publics. Je m'implique dans les initiatives et démarches pour la science ouverte aux niveaux européen et international (FAIRness literacy, Data Management Plan, FAIRisation training). Informatique dans le domaine de la biodiversité et de l'agronomie, bases de données, représentations des connaissances, gestion de données scientifiques, Plan de gestion de données, fouille de données, développement de communautés autour de la donnée, visualisation de données, dissémination, science ouverte, big data Ecologie côtière, Macro-écologie, Benthos, écologie Marine, suivi de la Biodiversité, suivi des impacts environnementaux, Océanographie biologique, Restauration écologique, Gestion des ressources en Milieu marin, systèmes d’aide à la décision En cours Passés Vous trouverez les slides des présentations orales - non acceptés dans hal sur researchgate : Romain David sur ResearchGateIngénieur de Recherche - Data Manager de ERINHA AISBL (European Research Infrastructure on Highly Pathogenic Agents)
précédemment Ingénieur de Recherche à l'INRAE (Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement) Laboratoire Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie (UMR MISTEA)
précédemment PhD Océanographie - Fouille de données à l'Institut Ecologie et Environnement du CNRS
Domaine d’activité
Thèmes et intérêts
Programmes de recherches récents et en cours
Domaines de recherche
Compétences
Publications
Publications
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Converging on a Semantic Interoperability Framework for the European Data Space for Science, Research and Innovation (EOSC)2nd Workshop on Ontologies for FAIR and FAIR Ontologies (Onto4FAIR), 9th Joint Ontology Workshops (JOWO 2023),, Cassia Trojahn; Luiz Olavo Bonino da Silva Santos; Giancarlo Guizzardi; Clement Jonquet, Jul 2023, Sherbrooke, Québec, Canada. ⟨10.5281/zenodo.8042997⟩ |
Insights into the practicalities of collaboration, data and code sharing across the globeResearch Data Alliance 20th Plenary (RDA P20), RDA, Mar 2023, Gothenburg, Sweden. ⟨10.5281/zenodo.7770148⟩ |
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Baleines et dauphins : des belles espèces sentinelles à étudier dans le cadre d'un OHM littoral, mais d'un abord bien complexeInternational Symposium of Labex DRIIHM 2021, Labex DRIIHM; CNRS InEE, Sep 2021, Toulouse, France. ⟨10.34972/driihm-dab5a4⟩ |
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Fairness and immunogenetics34th European Immunogenetics and Histocompatibility and 31st British Society for Histocompatibility and Immunogenetics Conference, Apr 2020, Glasgow, United Kingdom. pp.415-416 |
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Community ecology of coralligenous assemblages using a metabarcoding approach3rd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Specially Protected Areas Regional Activity Centre (SPA/RAC), Jan 2019, Antalya, Turkey. pp.41-45, ⟨10.5281/zenodo.12755700⟩ |
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Building a consistent Information System in the different nodes and defining standardisation strategies2. Annual Meeting EPPN2020, Wageningen University and Research Centre (WUR). NLD., May 2019, Wageningen, Netherlands. 32 p |
Developing crediting/rewarding mechanisms to foster resources (data and materials) sharing in Research: towards recommendations First draft of recommendations from the SHARC biodiversity research communityRDA 11th Plenary meeting, Mar 2018, Berlin, Germany |
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Analysis on the Graph Techniques for Data-mining and Visualization of Heterogeneous Biodiversity Data SetsComplexis 2017, Apr 2017, Porto, Portugal. pp.144 - 151, ⟨10.5220/0006379701440151⟩ |
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A new submarine observatory of the Sub-Antarctic coastal benthos facing climate change in Kerguelen IslandsXIIth SCAR Biology Symposium, A. Van de Putte, Jul 2017, Leuven, Belgium. pp.457, ⟨10.5281/zenodo.3241855⟩ |
Strike-Alert: Towards Real-time, High Resolution Navigational Software for Whale AvoidanceSUSTECH 2017 : 5th annual IEEE Conference on Technologies for Sustainability, Nov 2017, Phoenix, United States. ⟨10.1109/SusTech.2017.8333534⟩ |
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A comparison among coralligenous-based indices for the assessment of the marine ecological quality51st European Marine Biology Symposium (EMBS), EMBS, Sep 2016, Rhodes (Grèce), Greece. pp.23, ⟨10.5281/zenodo.12773785⟩ |
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CIGESMED project: evidence-based management for coralligenous habitats in the Mediterranean Sea51st European Marine Biology Symposium (EMBS), EMBS, Sep 2016, Rhodes (Grèce), Greece. ⟨10.5281/zenodo.12772391⟩ |
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Architecture, concepts et services d'un système d'indexation de données distribuées pour l'observation à large échelle en écologie marine32ème Conférence sur la Gestion de Données - Principes, Technologies et Applications, laboratoire d’Informatique et d’Automatique pour les Systèmes (LIAS), Nov 2016, POITIERS, France. ⟨10.5281/zenodo.12772074⟩ |
Citizen science for CIGESMED: involving divers in marine biological monitoring51st European Marine Biology Symposium (EMBS), EMBS, Sep 2016, Rhodes (Grèce), Greece. pp.39, ⟨10.5281/zenodo.12773961⟩ |
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IndexMed projects: new tools using the CIGESMED DataBase on Coralligenous for indexing, visualizing and data mining based on graphs8th International Congress on Environmental Modelling and Software, Toulouse, France, Sabine Sauvage, José-Miguel Sánchez-Pérez, Andrea Rizzoli (Eds.), Jul 2016, Toulouse, France. pp.32, ⟨10.5281/zenodo.6047140⟩ |
Project IndexMed: original solutions to manage the heterogeneity of marine ecology data in the Mediterranean Sea.51st European Marine Biology Symposium (EMBS), EMBS, Sep 2016, Rhodes (Grèce), Greece. pp.37, ⟨10.5281/zenodo.12773540⟩ |
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Community composition of macroinvertebrates in the Mediterranean Sea41st CIESM Congress, CIESM, Sep 2016, Kiel (Allemagne), Germany. pp.470, ⟨10.5281/zenodo.12760940⟩ |
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An ecosystem-based approach to assess the status of the Mediterranean coralligenous habitat.RAC/SPA 2nd Mediterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions, RAC/SPA, Oct 2014, Portorož Slovenia. pp.153-158 |
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CIGESMED. Protocols: how to implement a multidisciplinary approach on a large scale for coralligenous habitats surveysRAC/SPA 2nd Mediterranean Symp. on the Conservation of coralligenous and other calcareous bio-concretions, RAC/SPA, Oct 2014, Portorož, Slovenia. pp.66-71, ⟨10.13140/2.1.1895.0086⟩ |
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CIGESMED habitat's characterization: a simple ans reusable typology at the Mediterranean scaleRAC/ASP 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia. pp.211-212 |
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Defining keystone species in European regional seas: what are the candidates for the Mediterranean?11th Panhellenic Symposium on Oceanography and Fisheries, HCMR, May 2015, Mytilene, Lesbos Island, Greece. pp.553-556, ⟨10.5281/zenodo.12775587⟩ |
A first prototype for indexing, visualizing and mining heterogeneous data in Mediterranean ecology11th International Conference on Signal-Image Technology & Internet-Based Systems (SITIS), Kokou Yetongnon, Albert Dipanda, University Of Bourgogne, France and Richard Chbeir, University of Pau, France, Nov 2015, Bangkok, Thailand. pp. 232-239, ⟨10.1109/SITIS.2015.119⟩ |
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Preliminary assessment of macrobenthic assemblages of coralligenous habitats across the Mediterranean Sea2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions , RAC/ASP, Oct 2014, Portorož, Slovenia. pp.207-208 |
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CIGESMED: Coralligenous based indicators to evaluate and monitor the "good environmental statut" of the Mediterranean coastal waters, a SeasEra project2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia |
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CIGESMED’s protocol and network (Coralligenous basEd. Indicators to evaluate and monitor the “Good Environmental Status” of Mediterranean coastal waters)5th International Symposium Monitoring of Mediterranean coastal areas: problems and measurement techniques, CNR-IBIMET Firenze, Jun 2014, Livorno, Italy. pp.828-843 |
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AN INTEGRATED APPROACH TO EVALUATE AND MONITOR THE CONSERVATION STATE OF CORALLIGENOUS BOTTOMS: THE INDEX-COR METHODConference: 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Oct 2014, Portorož, Slovenia. ⟨10.13140/2.1.3180.6405⟩ |
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Improving data identification and tagging for more effective decision making in agricultureLeisa Armstrong. Improving Data Management and Decision Support Systems in Agriculture, 85, Burleigh Dodds Science Publishing, 2020, Series in Agricultural Science, 978-1-78676-340-2 |
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CIGESMED’s protocol and network (Coralligenous based Indicators to evaluate and monitor the “Good Environmental Status” of Mediterranean coastal waters)CNR-IBIMET Proceedings of Fifth International Symposium MONITORING OF MEDITERRANEAN COASTAL AREAS: PROBLEMS AND MEASUREMENT TECHNIQUES, , pp.828-843, 2014, 978-88-95597-19-5 |
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Zones côtières et développement durable : une équation à résoudreA. Euzen, L. Eymard, F. Gaill. Le devéloppement durable à découvert, Le devéloppement durable à découvert (Chapter: 2-22), CNRS editions, pp.96-97, 2013, 978-2-271-07896-4 |
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De la conception d'un système d'observation à large échelle au déploiement et à l'exploitation de son système d'information : application à l'observation des habitats coralligènes et à la colonisation de récifs artificiels (ARMS)Biodiversité et Ecologie. Aix Marseille Université, 2018. Français. ⟨NNT : ⟩ |
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Check-liste pour la Présence Numérique2023, ⟨10.5281/zenodo.7847715⟩ |
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Open data to support European pandemic preparedness BY-COVID learnings and policy recommendations after 18 months of cross-disciplinary collaboration2023, https://doi.org/10.5281/zenodo.7950479 |
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Report on identification of keystone species and processes across regional seas2014, pp.1-103. ⟨10.131140/2.1.2093.3929⟩ |
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PARSEC Data and Digital Output Management Plan and Workbook2020 |
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Identification of objects with Uniform Resource Identifier (URI): recommendations for application in plant phenotyping2019 |
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Application of the Ecosystem Service Concept to a Local-Scale: The Cases of Coralligenous Habitats in the North-Western Mediterranean Sea2017 |
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Ecological Data Preservation in the context of IndexMed -PREDON 20152015 |
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Définir une approche qualité des données de rechercheComité pour la Science Ouverte. 2025 |
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Plans de gestion des données : recommandations pour une gestion responsable et ouverte des donnéesComité pour la science ouverte. 2025 |
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Faciliter la documentation des données grâce aux métadonnées dans un projet de rechercheComité pour la science ouverte. 2025 |
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Share your software -SOFTWARE DOCUMENTATION AND CITATION CHECKLISTAGU; ERINHA. 2023, https://doi.org/10.5281/zenodo.7841908 |
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Prepare your team for Open Science - RESEARCH/PROJECT TEAM OPEN SCIENCE PRACTICESAGU; ERINHA. 2023, https://zenodo.org/record/8043545 |
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Equip your team for Open Science - RESOURCES AND GUIDANCE FOR TEAMSAGU; ERINHA. 2023, https://doi.org/10.5281/zenodo.8043645 |
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Increase the visibility of your work - DIGITAL PRESENCE CHECKLISTAGU; ERINHA. 2023, https://doi.org/10.5281/zenodo.7841734 |
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DATA DOCUMENTATION AND CITATION CHECKLISTAGU; ERINHA. 2023, https://zenodo.org/record/7841823 |
PARSEC D(DO)MP. Project tracksheets: scholarly publications, non peer-reviewed digital outputs, dataset log, and software log.University of Queensland; AGU; ERINHA. 2023 |
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BY-COVID D2.2: Data Access and Transfer across research domains and jurisdictions2.2, BBMRI-ERIC; EMBL-EBI; INFRAFRONTIER; Sciensano; BSC; ELIXIR-NL/VUmc; ERINHA; Lygature; CESSDA. 2023 |
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PARSEC Data and Digital Output Management Plan and WorkbookBELMONT Forum; AGU; ERINHA. 2023, https://zenodo.org/record/8231464 |
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Develop a Team Preservation Process - DIGITAL OBJECTS PRESERVATION CHECKLIST FOR TEAMSAGU. 2023 |
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RDA for Data Management Planning Community Cross-fertilisation Workshop SummaryResearch Data Alliance. 2022 |
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Repository Guidelines[Research Report] 1, PARSEC. 2022 |
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D4.1 EOSC-Life Requirements for hosting/ distributing and access control for sensitive dataD4.1, ECRIN; BBMRI-ERIC; EATRIS; Charité; Lygature; ERINHA; EMBRC; INFRAFRONTIER; EuroBioImaging. 2022 |
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D8.1 EOSC-Life Methodology framework to enhance reproducibility within EOSC-Life – revised versionEOSC-Life; INFRAFRONTIER; VIB; EMBRC; ERINHA; IRFMN; EMBL-HD; UNIMAN; Fraunhofer; BBMRI-ERIC; NKI; EMBL-EBI; CSR4; HU; CSIC; BSC. 2022 |
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BY-COVID D3.2: Implementation of cloud-based, high performance, scalable indexing system.3.2, ELIXIR-Hub; EMBL-EBI; CESSDA/TAU-FSD; ERINHA; UOXF; ECRIN; ELIXIR-NL/VUmc; ELIXIR-NL; Lygature. 2022 |
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BY-COVID - D3.1 - Metadata standards.3.1, EMBL; CESSDA; ERINHA; CESSDA/TAU-FSD; ECRIN,; ELIXIR-NL/VUmc; ELIXIR-NL; Lygature; ELIXIR-UK/UNIMAN; UOXF. 2022, pp.3.1 |
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EOSC-Life -D1.3 EOSC-Life EOSC FAIR services deployment for open callsD1.3, Fraunhofer-Institut für Offene Kommunikationssysteme (FOKUS Fraunhofer); EMBL; CSIC; VU; BBMRI; KNAW; UVEG; USMI; IMG; UNIMAN; LUMC; EATRIS; UNIMIB; EBI; ECRIN; EMBRC; EMPHASIS (FZJ); ERINHA; INFRAFRONTIER; INRAE; UNIVDUN; HMGU; CERBM; BSCRC; UOULU; CRRMMP. 2022 |
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TOWARDS A DATA QUALITY FRAMEWORK FOR EOSC Authorship CommunityEOSC Association. 2022 |
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Community-driven Governance of FAIRness Assessment: An Open Issue, an Open Discussion Authorship CommunityEOSC Association; EOSC. 2022, pp.10.5281/zenodo.7390482 |
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EOSC-Life Report on data standards for observational and interventional studies, and interoperability between healthcare and research dataEOSC-Life. 2021 |
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EOSC-Life D3.2 Report on the work of the initial demonstratorsInstruct-ERIC; CSIC; BSC; CRG; EMBL-HD; INRAE; CNRS; CCMAR; EMBRC ERIC; ALUFR; UNIVDUN; UNITO; ERINHA; CNR; FZJ; UNIMAN; NIB; UNI Bielefeld; Fraunhofer; Diamond; IMG; EATRIS. 2021 |
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PARSEC DDOMP Workbook Checklist[Research Report] 1, AGU. 2021 |
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EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data - a concept description[Research Report] EATRIS/Lygature; ECRIN; CRS4; Charité; BBMRI; INSERM; EMBRC; ERINHA; EATRIS/IRFMN; EU-OPENSCREEN; IME; ELIXIR. 2021 |
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EOSC-Life D1.2 EOSC repository deployment for project demonstrators1.2, Fraunhofer-Institut für Offene Kommunikationssysteme (FOKUS Fraunhofer); EMBL; LUMC; EATRIS; INRAE; ECRIN; EMBRC; EMPHASIS (FZJ); ERINHA; INFRAFRONTIER; UNIMIB; UNIVDUN; VU; HMGU; CERBM; BSCRC; UOULU; CIRMMP; CSIC; KNAW; BBMRI; UVEG; USMI; IMG; CNRI; UNIMAN. 2021 |
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Manage your Digital Objects – Research Team Member Checklist[Research Report] PARSEC. 2021 |
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EOSC-Life D4.3 - Guidance and policy on standards and tools to facilitate sharing and reuse of multimodal data (including imaging), cohort integration, and biosamples4.3, ECRIN; BBMRI; IRFMN; EU-OPENSCREEN; ELIXIR; VHIR; Charité; UNITO; Lygature; INSERM; EMBRC; ERINHA; EATRIS. 2021 |
EOSC-Life WP4 Toolbox: Categorisation system for resources to be referenced in the toolbox for sharing of sensitive data[Research Report] ECRIN. 2020 |
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La mer et le littoral de Provence-Alpes-Côte d’Azur face au changement climatiqueGREC-PACA. 2017, pp.1-48 |
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CIGESMED : Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the Mediterranean coastal waters[Research Report] ANR. 2016, 107 pp |
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CIGESMED for divers - Citizen Science for CIGESMED[Technical Report] IMBE Institut Méditerranéen de Biodiversité et d'Ecologie marine et continentale. 2016 |
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IndexMEED cases studies using "Omics" data with graph theoryTDWG, 2017, Ottawa, Canada. Biodiversity Information Science and Standards, 1, pp.340-361, 2017, ⟨10.3897/tdwgproceedings.1.20740⟩ |