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Samuel Bernard





Les mathématiques du cœur

Samuel Bernard
Interstices, 2020
Journal articles hal-03132429v1

The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities

Joel Lehman , Jeff Clune , Dusan Misevic , Christoph Adami , Julie Beaulieu et al.
Artificial Life, 2020, 26 (2), pp.274-306. ⟨10.1162/artl_a_00319⟩
Journal articles hal-01735473v1
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Radioprotective effects of induced astronaut torpor and advanced propulsion systems during deep space travel

Tim Squire , A. Ryan , Samuel Bernard
Life Sciences in Space Research, 2020, 26, pp.105-113. ⟨10.1016/j.lssr.2020.05.005⟩
Journal articles hal-02868066v1
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Phenotypic noise and the cost of complexity

Charles Rocabert , Guillaume Beslon , Carole Knibbe , Samuel Bernard
Evolution - International Journal of Organic Evolution, 2020, ⟨10.1111/evo.14083⟩
Journal articles hal-02920356v1

Dynamics of oligodendrocyte generation in multiple sclerosis

Maggie Yeung , Mehdi Djelloul , Embla Steiner , Samuel Bernard , Mehran Salehpour et al.
Nature, 2019, 566, pp.538-542. ⟨10.1038/s41586-018-0842-3⟩
Journal articles hal-02002274v1
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Cell generation dynamics underlying naïve T cell homeostasis in adult humans

Jeff E. Mold , Pedro Réu , Axel Olin , Samuel Bernard , Jakob Michaelsson et al.
PLoS Biology, 2019, 17 (10), pp.e3000383. ⟨10.1371/journal.pbio.3000383⟩
Journal articles hal-02160888v2
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Meningioma growth dynamics assessed by radiocarbon retrospective birth dating

Hagen B Huttner , Olaf Bergmann , Mehran Salehpour , Raouf El Cheikh , Makoto Nakamura et al.
EBioMedicine, 2018, 27, pp.176-181. ⟨10.1016/j.ebiom.2017.12.020⟩
Journal articles hal-01671339v1
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The Lifespan and Turnover of Microglia in the Human Brain

Pedro Réu , Azadeh Khosravi , Samuel Bernard , Jeff E. Mold , Mehran Salehpour et al.
Cell Reports, 2017, 20 (4), pp.779 - 784. ⟨10.1016/j.celrep.2017.07.004⟩
Journal articles hal-01572438v1
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Impact of fat mass and distribution on lipid turnover in human adipose tissue

Kirsty L Spalding , Samuel Bernard , Erik Näslund , Mehran Salehpour , Göran Possnert et al.
Nature Communications, 2017, 8, pp.15253. ⟨10.1038/ncomms15253⟩
Journal articles hal-01561605v1
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A multiscale modelling approach for the regulation of the cell cycle by the circadian clock

Raouf El Cheikh , Samuel Bernard , Nader El Khatib
Journal of Theoretical Biology, 2017, 426, pp.117-125. ⟨10.1016/j.jtbi.2017.05.021⟩
Journal articles hal-01561617v1
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Organic molecular heterogeneities can withstand diagenesis

Julien Alleon , Sylvain Bernard , Corentin Le Guillou , Damien Daval , Feriel Skouri-Panet et al.
Scientific Reports, 2017, 7, pp.1508. ⟨10.1038/s41598-017-01612-8⟩
Journal articles hal-01528449v1
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Stability Analysis of a Model of Interaction Between the Immune System and Cancer Cells in Chronic Myelogenous Leukemia

Apollos Besse , Geoffrey D. Clapp , Samuel Bernard , Franck-Emmanuel Nicolini , Doron Levy et al.
Bulletin of Mathematical Biology, 2017, pp.1-27. ⟨10.1007/s11538-017-0272-7⟩
Journal articles hal-01539364v1
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Estimates and impact of lymphocyte division parameters from CFSE data using mathematical modelling.

Pauline Mazzocco , Samuel Bernard , Laurent Pujo-Menjouet
PLoS ONE, 2017, 12 (6), pp.e0179768
Journal articles hal-01561667v1
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Long-term treatment effects in chronic myeloid leukemia

Apollos Besse , Thomas Lepoutre , Samuel Bernard
Journal of Mathematical Biology, 2017, pp.1-26. ⟨10.1007/s00285-017-1098-5⟩
Journal articles hal-01447781v1
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Moving the Boundaries of Granulopoiesis Modelling

Samuel Bernard
Bulletin of Mathematical Biology, 2016, 78 (12), pp.2358 - 2363. ⟨10.1007/s11538-016-0215-8⟩
Journal articles hal-01391393v1

Dynamics of Cell Generation and Turnover in the Human Heart

Olaf Bergmann , Sofia Zdunek , Anastasia Felker , Mehran Salehpour , Kanar Alkass et al.
Cell, 2015, 161 (7), pp.1566-1575. ⟨10.1016/j.cell.2015.05.026⟩
Journal articles hal-01225091v1
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Implication of the Autologous Immune System in BCR-ABL Transcript Variations in Chronic Myelogenous Leukemia Patients Treated with Imatinib.

Geoffrey D Clapp , Thomas Lepoutre , Raouf El Cheikh , Samuel Bernard , Jérémy Ruby et al.
Cancer Research, 2015, 75 (19), pp.4053-62. ⟨10.1158/0008-5472.CAN-15-0611⟩
Journal articles hal-01251396v1
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Optimal linear stability condition for scalar differential equations with distributed delay

Samuel Bernard , Fabien Crauste
Discrete and Continuous Dynamical Systems - Series B, 2015, 20 (7), ⟨10.3934/dcdsb.2015.20.1855⟩
Journal articles hal-00997528v1

Transplanted Bone Marrow-Derived Cells Contribute to Human Adipogenesis

Mikael Rydén , Mehmet Uzunel , Joanna l. Hård , Erik Borgström , Jeff e. Mold et al.
Cell Metabolism, 2015, 22 (3), pp.408-417. ⟨10.1016/j.cmet.2015.06.011⟩
Journal articles hal-01225085v1

Neurogenesis in the Striatum of the Adult Human Brain.

Aurélie Ernst , Kanar Alkass , Samuel Bernard , Mehran Salehpour , Shira Perl et al.
Cell, 2014, 156 (5), pp.1072-1083. ⟨10.1016/j.cell.2014.01.044⟩
Journal articles hal-00952021v1
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Modeling circadian clock-cell cycle interaction effects on cell population growth rates

Raouf El Cheikh , Samuel Bernard , Nader El Khatib
Journal of Theoretical Biology, 2014, 363, pp.318-331. ⟨10.1016/j.jtbi.2014.08.008⟩
Journal articles hal-01055081v1

Multiscale Modeling of the Early CD8 T-Cell Immune Response in Lymph Nodes: An Integrative Study

Sotiris Prokopiou , Loic Barbarroux , Samuel Bernard , Julien Mafille , Yann Leverrier et al.
Computation, 2014, 2 (4), pp.159-181. ⟨10.3390/computation2040159⟩
Journal articles hal-01074736v1
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A Model for Genome Size Evolution

Stephan Fischer , Samuel Bernard , Guillaume Beslon , Carole Knibbe
Bulletin of Mathematical Biology, 2014, 76 (9), pp.2249 - 2291. ⟨10.1007/s11538-014-9997-8⟩
Journal articles hal-01090984v1

The age and genomic integrity of neurons after cortical stroke in humans.

Hagen B Huttner , Olaf Bergmann , Mehran Salehpour , Attila Rácz , Jemal Tatarishvili et al.
Nature Neuroscience, 2014, pp.801-3
Journal articles hal-01092159v1

Dynamics of oligodendrocyte generation and myelination in the human brain.

Maggie S y Yeung , Sofia Zdunek , Olaf Bergmann , Samuel Bernard , Mehran Salehpour et al.
Cell, 2014, 159, pp.766-774
Journal articles hal-01092151v1
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From Single-Scale to Multiscale Modelling in Biology

Samuel Bernard
Acta Biotheoretica, 2013, 61 (3), pp.291-303. ⟨10.1007/s10441-013-9199-z⟩
Journal articles hal-00867564v1

Dynamics of hippocampal neurogenesis in adult humans.

Kirsty L Spalding , Olaf Bergmann , Kanar Alkass , Samuel Bernard , Mehran Salehpour et al.
Cell, 2013, 153 (6), pp.1219-1227. ⟨10.1016/j.cell.2013.05.002⟩
Journal articles hal-00839513v1

Adipocyte triglyceride turnover and lipolysis in lean and overweight subjects.

Mikael Rydén , Daniel P Andersson , Samuel Bernard , Kirsty Spalding , Peter Arner et al.
Journal of Lipid Research, 2013, 54 (10), pp.2909-2913. ⟨10.1194/jlr.M040345⟩
Journal articles hal-00867570v1
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Analysis of radiocarbon, stable isotopes and DNA in teeth to facilitate identification of unknown decedents.

Kanar Alkass , Hisako Saitoh , Bruce A Buchholz , Samuel Bernard , Gunilla Holmlund et al.
PLoS ONE, 2013, 8 (7), ⟨10.1371/journal.pone.0069597⟩
Journal articles hal-00867568v1

Cardiomyocyte renewal in humans.

Olaf Bergmann , Sofia Zdunek , Jonas Frisén , Samuel Bernard , Henrik Druid et al.
Circulation Research, 2012, 110 (1), e17-8; author reply e19-21. ⟨10.1161/CIRCRESAHA.111.259598⟩
Journal articles hal-00755465v1
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Né pour sentir [Born to smell].

Samuel Bernard
médecine/sciences, 2012, 28 (11), pp.937-9. ⟨10.1051/medsci/20122811012⟩
Journal articles hal-00767595v1

Adipocyte triglyceride turnover is independently associated with atherogenic dyslipidemia.

Keith Frayn , Samuel Bernard , Kirsty Spalding , Peter Arner
Journal of the American Heart Association, 2012, 1 (6), pp.e003467. ⟨10.1161/JAHA.112.003467⟩
Journal articles hal-00839514v1

The age of olfactory bulb neurons in humans.

Olaf Bergmann , Jakob Liebl , Samuel Bernard , Kanar Alkass , Maggie S y Yeung et al.
Neuron, 2012, 74 (4), pp.634-639. ⟨10.1016/j.neuron.2012.03.030⟩
Journal articles hal-00755464v1

Modeling Biological Rhythms in Cell Populations

Raouf El Cheikh , Thomas Lepoutre , Samuel Bernard
Mathematical Modelling of Natural Phenomena, 2012, 7 (6), pp.107--125. ⟨10.1051/mmnp/20127606⟩
Journal articles hal-00847008v1
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Regulation of mammalian cell cycle progression in the regenerating liver.

Anuradha Chauhan , Stephan Lorenzen , Hanspeter Herzel , Samuel Bernard
Journal of Theoretical Biology, 2011, 283 (1), pp.103-12. ⟨10.1016/j.jtbi.2011.05.026⟩
Journal articles hal-00649211v1
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Regulation of mammalian cell cycle progression in the regenerating liver

Anuradha Chauhan , Stephan Lorenzen , Hanspeter Herzel , Samuel Bernard
Journal of Theoretical Biology, 2011, 283 (1), pp.103. ⟨10.1016/j.jtbi.2011.05.026⟩
Journal articles hal-00719488v1

Identification of cardiomyocyte nuclei and assessment of ploidy for the analysis of cell turnover.

Olaf Bergmann , Sofia Zdunek , Kanar Alkass , Henrik Druid , Samuel Bernard et al.
Experimental Cell Research, 2011, 317 (2), pp.188-94. ⟨10.1016/j.yexcr.2010.08.017⟩
Journal articles hal-00542527v1
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Polina Kurbatova , Samuel Bernard , Nikolai Bessonov , Fabien Crauste , Ivan Demin et al.
SIAM Journal on Applied Mathematics, 2011, 71 (6), pp.2246-2268. ⟨10.1137/100815517⟩
Journal articles hal-00538496v2

Dynamics of human adipose lipid turnover in health and metabolic disease.

Peter Arner , Samuel Bernard , Mehran Salehpour , Göran Possnert , Jakob Liebl et al.
Nature, 2011, 478 (7367), pp.110-3. ⟨10.1038/nature10426⟩
Journal articles hal-00649210v1

Adipocyte turnover: relevance to human adipose tissue morphology.

Erik Arner , Pål O Westermark , Kirsty L Spalding , Tom Britton , Mikael Rydén et al.
Diabetes, 2010, 59 (1), pp.105-9. ⟨10.2337/db09-0942⟩
Journal articles hal-00542528v1
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A mathematical model for the interpretation of nuclear bomb test derived 14C incorporation in biological systems

Samuel Bernard , Jonas Frisén , Kirsty L. Spalding
Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 2010, 268 (7-8), pp.1295-1298. ⟨10.1016/j.nimb.2009.10.156⟩
Journal articles hal-00544517v2
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Tumor growth rate determines the timing of optimal chronomodulated treatment schedules

Samuel Bernard , Branka Cajavec Bernard , Francis Lévi , Hanspeter Herzel
PLoS Computational Biology, 2010, 6 (3), pp.e1000712. ⟨10.1371/journal.pcbi.1000712⟩
Journal articles hal-00470302v1

Evidence for cardiomyocyte renewal in humans.

Olaf Bergmann , Ratan D Bhardwaj , Samuel Bernard , Sofia Zdunek , Fanie Barnabé-Heider et al.
Science, 2009, 324 (5923), pp.98-102. ⟨10.1126/science.1164680⟩
Journal articles hal-00374382v1
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Modélisation de la dynamique de l'hématopoïèse normale et pathologique

Mostafa Adimy , Samuel Bernard , Jean Clairambault , Fabien Crauste , Stéphane Génieys et al.
Hématologie, 2008, 14 (5), pp.339-350. ⟨10.1684/hma.2008.0282⟩
Journal articles hal-00750278v1

Complex dynamics in the Oregonator model with linear delayed feedback

Krishnamachari Sriram , Samuel Bernard
Chaos: An Interdisciplinary Journal of Nonlinear Science, 2008, 18, pp.023126. ⟨10.1063/1.2937015⟩
Journal articles hal-00371750v1

Dynamics of fat cell turnover in humans.

Kirsty L Spalding , Erik Arner , Pål O Westermark , Samuel Bernard , Bruce A Buchholz et al.
Nature, 2008, 453 (7196), pp.783-7. ⟨10.1038/nature06902⟩
Journal articles hal-00372715v1
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Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus

Samuel Bernard , Didier Gonze , Branka Cajavec , Hanspeter Herzel , Achim Kramer et al.
PLoS Computational Biology, 2007, 3 (4), pp.e68. ⟨10.1371/journal.pcbi.0030068⟩
Journal articles hal-00371737v1
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Why do cells cycle with a 24 hour period?

Samuel Bernard , Hanspeter Herzel
Genome informatics series : proceedings of the .. Workshop on Genome Informatics. Workshop on Genome Informatics., 2006, 17 (1), pp.72--79
Journal articles hal-00371755v1
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Cost-effective G-CSF therapy strategies for cyclical neutropenia: mathematical modelling based hypotheses.

Catherine Foley , Samuel Bernard , Michael C Mackey
Journal of Theoretical Biology, 2006, 238 (4), pp.754-63. ⟨10.1016/j.jtbi.2005.06.021⟩
Journal articles hal-00542529v1

Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations.

Samuel Bernard , Branka Cajavec , Laurent Pujo-Menjouet , Michael C Mackey , Hanspeter Herzel et al.
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 2006, 364 (1842), pp.1155-70. ⟨10.1098/rsta.2006.1761⟩
Journal articles hal-00372717v1

Death of neuronal clusters contributes to variance of age at onset in Huntington's disease

Branka Cajavec , Hanspeter Herzel , Samuel Bernard
neurogenetics, 2006, 7 (1), pp.21--25
Journal articles hal-00371760v1
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Spontaneous Synchronization of Coupled Circadian Oscillators

Didier Gonze , Samuel Bernard , Christian Waltermann , Achim Kramer , Hanspeter Herzel et al.
Biophysical Journal, 2005, 89 (1), pp.120--129. ⟨10.1529/biophysj.104.058388⟩
Journal articles hal-00371748v1

Aggregation in Huntington's disease: insights through modelling.

Branka Cajavec , Samuel Bernard , Hanspeter Herzel
Genome informatics series : proceedings of the .. Workshop on Genome Informatics. Workshop on Genome Informatics., 2005, 16 (1), pp.262-71
Journal articles hal-00542532v1

Bifurcations in a white-blood-cell production model.

Samuel Bernard , Jacques Bélair , Michael C Mackey
Comptes Rendus Biologies, 2004, 327 (3), pp.201-10
Journal articles hal-00542530v1

Analysis of cell kinetics using a cell division marker: mathematical modeling of experimental data.

Samuel Bernard , Laurent Pujo-Menjouet , Michael C Mackey
Biophysical Journal, 2003, 84 (5), pp.3414-24. ⟨10.1016/S0006-3495(03)70063-0⟩
Journal articles hal-00542531v1

Temps de premier passage pour le modèle de nucléation aléatoire de Becker-Doring

Romain Yvinec , Maria R. d'Orsogna , Tom Chou , Laurent Pujo-Menjouet , Samuel Bernard et al.
Séminaire du Laboratoire de Mathématiques Appliquées de Compiègne, Feb 2013, Compiègne, France
Conference papers hal-03115032v1
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Lake Pavin Paleolimnology and Event Stratigraphy

Léo Chassiot , Emmanuel Chapron , Yannick Miras , Markus J. Schwab , Patrick Albéric et al.
Lake Pavin, history, geology, biogeochemistry and sedimentology of a deep meromictic maar lake, Springer, pp.381 - 406, 2016, ⟨10.1007/978-3-319-39961-4_23⟩
Book sections hal-01447131v1

Mathematical modeling in chronobiology

Grigory Bordyugov , Pål O Westermark , Ana Korencic , Samuel Bernard , Hanspeter Herzel et al.
Achim Kramer and Martha Merrow. Circadian clocks, Springer, pp.335--357, 2013, ⟨10.1007/978-3-642-25950-0_14⟩
Book sections hal-00839517v1

Modélisation multi-échelles en biologie

Samuel Bernard
Nicolas Glade and Angélique Stéphanou. Le vivant discret et continu, Éditions Matériologiques, pp.65-89, 2013, Science & Philosophie, 978-2-919694-23-5
Book sections hal-00920523v1
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Structured differential equations and multiscale approaches for human cell population dynamics

Samuel Bernard
Dynamical Systems [math.DS]. Université Claude Bernard Lyon 1, 2017
Habilitation à diriger des recherches tel-01572434v2