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Sebastien Carrere

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First whole genome assembly and annotation of a European common bean cultivar using PacBio HiFi and Iso-Seq data

Sébastien Carrère , Baptiste Mayjonade , David Lalanne , Sylvain Gaillard , Jérôme Verdier
Data in Brief, 2023, 48, pp.109182. ⟨10.1016/j.dib.2023.109182⟩
Journal articles hal-04089846v1
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A high diversity of non-target site resistance mechanisms to acetolactate-synthase (ALS) inhibiting herbicides has evolved within and among field populations of common ragweed (Ambrosia artemisiifolia L.)

Ingvild Loubet , Lucie Meyer , Séverine Michel , Fanny Pernin , Sébastien Carrere
BMC Plant Biology, 2023, 23 (1), pp.art. 510. ⟨10.1186/s12870-023-04524-0⟩
Journal articles hal-04288942v1
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Comparative phylotranscriptomics reveals ancestral and derived root nodule symbiosis programmes

Cyril Libourel , Jean Keller , Lukas Brichet , Anne-Claire Cazalé , Sébastien Carrère
Nature Plants, 2023, 9 (7), pp.1067-1080. ⟨10.1038/s41477-023-01441-w⟩
Journal articles hal-04187925v1
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Pathogen-derived mechanical cues potentiate the spatio-temporal implementation of plant defense

Ophélie Léger , Frédérick Garcia , Mehdi Khafif , Sébastien Carrere , Nathalie Leblanc-Fournier
BMC Biology, 2022, 20 (1), pp.292. ⟨10.1186/s12915-022-01495-w⟩
Journal articles hal-03957987v1

Xanthomonas transcriptome inside cauliflower hydathodes reveals bacterial virulence strategies and physiological adaptations at early infection stages

Julien Luneau , Aude Cerutti , Brice Roux , Sébastien Carrère , Marie‐françoise Jardinaud
Molecular Plant Pathology, 2022, 23 (2), pp.159-174. ⟨10.1111/mpp.13117⟩
Journal articles hal-03580527v1
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DNA demethylation and hypermethylation are both required for late nodule development in Medicago

Yann Pecrix , Erika Sallet , Sandra Moreau , Olivier Bouchez , Sébastien Carrere
Nature Plants, 2022, 8 (7), pp.741-749. ⟨10.1038/s41477-022-01188-w⟩
Journal articles hal-03728475v1
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Genome‐wide identification of fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection

Julien S Luneau , Maël Baudin , Thomas Quiroz Monnens , Sébastien Carrère , Olivier Bouchez
New Phytologist, 2022, 12 (13), pp.235-248. ⟨10.1111/nph.18313⟩
Journal articles hal-03744702v1
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MtEFD and MtEFD2: Two transcription factors with distinct neofunctionalization in symbiotic nodule development

Marie-Françoise Jardinaud , Justine Fromentin , Marie-Christine Auriac , Sandra Moreau , Yann Pecrix
Plant Physiology, 2022, 189 (3), pp.1587 - 1607. ⟨10.1093/plphys/kiac177⟩
Journal articles hal-03728310v1
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Imaging Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry of oxaliplatin derivatives in human tissue sections

Justine Ferey , Marion Larroque , Isabelle Schmitz-Afonso , Johann Le Maître , Olivia Sgarbura
Talanta, 2022, 237, pp.122915. ⟨10.1016/j.talanta.2021.122915⟩
Journal articles hal-03400641v1
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Investigating genetic diversity within the most abundant and prevalent non-pathogenic leaf-associated bacteria interacting with Arabidopsis thaliana in natural habitats

Daniela Ramírez-Sánchez , Chrystel Gibelin-Viala , Baptiste Mayjonade , Rémi Duflos , Elodie Belmonte
Frontiers in Microbiology, 2022, 13, pp.984832. ⟨10.3389/fmicb.2022.984832⟩
Journal articles hal-03806728v1
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Genome Sequences of 17 Strains from Eight Races of Xanthomonas campestris pv. campestris

Caroline Bellenot , Sébastien Carrère , Carine Gris , Laurent Noël , Matthieu Arlat
Microbiology Resource Announcements, 2022, 11 (7), ⟨10.1128/mra.00279-22⟩
Journal articles hal-03842450v1

Symbiotic Nodule Development and Efficiency in the Medicago truncatula Mtefd-1 Mutant Is Highly Dependent on Sinorhizobium Strains

Marie‐françoise Jardinaud , Sebastien Carrere , Benjamin Gourion , Pascal Gamas
Plant and Cell Physiology, 2022, ⟨10.1093/pcp/pcac134⟩
Journal articles hal-03847531v1
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Population genomics of apricots unravels domestication history and adaptive events

Alexis Groppi , Shuo Liu , A. Cornille , David Tricon , Quynh Trang Bui
Nature Communications, 2021, 12 (1), pp.3956. ⟨10.1038/s41467-021-24283-6⟩
Journal articles hal-03282504v1
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MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula

Sebastien Carrere , Jerome Verdier , Pascal Gamas
Plant and Cell Physiology, 2021, 62 (9), pp.1494-1500. ⟨10.1093/pcp/pcab110⟩
Journal articles hal-03420304v1
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LeGOO: An Expertized Knowledge Database For The Model Legume Medicago truncatula

Sébastien Carrere , Marion Verdenaud , Clare Gough , Jerome Gouzy , Pascal Gamas
Plant and Cell Physiology, 2020, 61 (1), pp.203-211. ⟨10.1093/pcp/pcz177⟩
Journal articles hal-02290862v1
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Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

Justine Foucher , Mylène Ruh , Anne Preveaux , Sébastien Carrere , Sandra Pelletier
BMC Genomics, 2020, 21 (1), pp.566. ⟨10.1186/s12864-020-06972-6⟩
Journal articles hal-02945634v1
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Toward a comprehensive study for multielemental quantitative LA-ICP MS bioimaging in soft tissues

Carine Arnaudguilhem , Marion Larroque , Olivia Sgarbura , Dominique Michau , François Quenet
Talanta, 2020, 222, 121537 (11 p.). ⟨10.1016/j.talanta.2020.121537⟩
Journal articles hal-03019255v1
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EffectorK, a comprehensive resource to mine for Ralstonia, Xanthomonas, and other published effector interactors in the Arabidopsis proteome

Manuel Gonzalez‐fuente , Sébastien Carrere , Dario Monachello , Benjamin G Marsella , Anne‐claire Cazalé
Molecular Plant Pathology, 2020, 21 (10), pp.1257-1270. ⟨10.1111/mpp.12965⟩
Journal articles hal-03052440v1
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High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

Barbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol
Nature Communications, 2020, 11 (1), pp.492. ⟨10.1038/s41467-019-14197-9⟩
Journal articles hal-02460008v1

A receptor-like kinase enhances sunflower resistance to Orobanche cumana

Pauline Duriez , Sonia Vautrin , Marie-Christine Auriac , Julia Bazerque , Marie-Claude Boniface
Nature Plants, 2019, 5 (12), pp.1211 - 1215. ⟨10.1038/s41477-019-0556-z⟩
Journal articles hal-02626477v1
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Pangenomic type III effector database of the plant pathogenic Ralstonia spp.

Cyrus Sabbagh , Sébastien Carrere , Fabien Lonjon , Fabienne Vailleau , Alberto P. Macho
PeerJ, 2019, 7, pp.1-21. ⟨10.7717/peerj.7346⟩
Journal articles hal-02623550v1

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

Claudia Bartoli , Léa Frachon , Matthieu Barret , Mylène Rigal , Carine Huard-Chauveau
The International Society of Microbiologial Ecology Journal, 2018, 12 (8), pp.2024-2038. ⟨10.1038/s41396-018-0152-7⟩
Journal articles hal-04204482v1

Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

Léa Frachon , Cyril Libourel , Romain Villoutreix , Sébastien Carrere , Cédric Glorieux
Nature Ecology & Evolution, 2018, 2, pp.194. ⟨10.1038/s41559-017-0405-2⟩
Journal articles hal-02622028v1

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

Claudia Bartoli , Léa Frachon , Matthieu Barret , Mylène Rigal , Carine Huard-Chauveau
The International Society of Microbiologial Ecology Journal, 2018, 12 (8), pp.2024-2038. ⟨10.1038/s41396-018-0152-7⟩
Journal articles hal-02373577v1
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A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale

Léa Frachon , Claudia Bartoli , Sebastien Carrere , Olivier Bouchez , Adeline Chaubet
Frontiers in Plant Science, 2018, 9, ⟨10.3389/fpls.2018.00967⟩
Journal articles hal-02373598v1

Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire

Nicolas Denancé , Boris Szurek , Erin L Doyle , Emmanuelle Lauber , Lisa Fontaine-Bodin
New Phytologist, 2018, 219 (1), pp.391-407. ⟨10.1111/nph.15148⟩
Journal articles hal-02090739v1

Whole-genome landscape of Medicago truncatula symbiotic genes

Yann Pecrix , S. Evan Staton , Erika Sallet , Christine Lelandais-Brière , Sandra Moreau
Nature Plants, 2018, 4 (12), pp.1017-1025. ⟨10.1038/s41477-018-0286-7⟩
Journal articles hal-02383693v1
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The Rosa genome provides new insights into the domestication of modern roses

Olivier Raymond , Jerome Gouzy , Jérémy Just , Hélène Badouin , Marion Verdenaud
Nature Genetics, 2018, 50 (6), pp.772-777. ⟨10.1038/s41588-018-0110-3⟩
Journal articles hal-01798003v1

High conservation of the transcriptional response to acetolactate-synthase-inhibiting herbicides across plant species

Christophe Délye , A. Duhoux , J. A. C. Gardin , Jerome Gouzy , Sébastien Carrere
Weed Research, 2018, 58 (1), pp.2 - 7. ⟨10.1111/wre.12276⟩
Journal articles hal-02628831v1

Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids

Fanny Bonnafous , Ghislain Fiévet , Nicolas Blanchet , Marie-Claude Boniface , Sébastien Carrere
TAG Theoretical and Applied Genetics, 2018, 131 (2), pp.319-332. ⟨10.1007/s00122-017-3003-4⟩
Journal articles hal-02628425v1

Transcriptional markers enable identification of rye-grass (Lolium sp.) plants with non-target -site-based resistance to herbicides inhibiting acetolactate-synthase

Arnaud Duhoux , Sebastien Carrere , Christophe Délye
Plant Science, 2017, 257, pp.22-36. ⟨10.1016/j.plantsci.2017.01.009⟩
Journal articles hal-01607524v1
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High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero

Ebrahim Osdaghi , Natalia Forero Serna , Stéphanie Bolot , Marion Fischer-Le Saux , Marie-Agnès Jacques
Genome Announcements, 2017, 5 (48), pp.e01378-17. ⟨10.1128/genomeA.01378-17⟩
Journal articles hal-01905579v1
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Genetic control of plasticity of oil yield for combined abiotic stresses using a joint approach of crop modeling and genome-wide association

Brigitte Mangin , Pierre Casadebaig , Eléna Cadic , Nicolas Blanchet , Marie-Claude Boniface
Plant, Cell and Environment, 2017, 40 (10), pp.2276-2291. ⟨10.1111/pce.12961⟩
Journal articles hal-01608380v1
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Genomic Prediction of Sunflower Hybrids Oil Content

Brigitte Mangin , Fanny Bonnafous , Nicolas Blanchet , Marie-Claude Boniface , Emmanuelle Bret-Mestries
Frontiers in Plant Science, 2017, 8, pp.1-12. ⟨10.3389/fpls.2017.01633⟩
Journal articles hal-02624895v1

Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

Léa Frachon , Cyril Libourel , Romain Villoutreix , Sébastien Carrere , Cédric Glorieux
Nature Ecology & Evolution, 2017, 1 (10), pp.1551-1561. ⟨10.1038/s41559-017-0297-1⟩
Journal articles hal-01723277v1

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

Hélène Badouin , Jerome Gouzy , Christopher Grassa , Florent Murat , S Evan Staton
Nature, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩
Journal articles hal-01603287v1
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myGenomeBrowser: building and sharing your own genome browser

Sébastien Carrere , Jerome Gouzy
Bioinformatics, 2017, 33 (8), pp.1255-1257. ⟨10.1093/bioinformatics/btw800⟩
Journal articles hal-01608904v1

Robotic Versus Laparoscopic Total Mesorectal Excision (TME) for Sphincter-Saving Surgery: Is There Any Difference in the Transanal TME Rectal Approach?

Pierre-Emmanuel Colombo , Martin Bertrand , Mathias Alline , Eric Boulay , Anne Mourregot
Annals of Surgical Oncology, 2016, 23 (5), pp.1594 - 1600. ⟨10.1245/s10434-015-5048-4⟩
Journal articles hal-01908670v1

Standardized single docking, four arms and fully robotic proctectomy for rectal cancer: the key points are the ports and arms placement

Martin Marie Bertrand , Pierre-Emmanuel Colombo , Anne Mourregot , Drissa Traore , Sebastien Carrere
Journal of Robotic Surgery, 2016, 10 (2), pp.171 - 174. ⟨10.1007/s11701-015-0551-y⟩
Journal articles hal-01908899v1

Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

Marie-Agnès Jacques , Matthieu Arlat , Alice Boulanger , Tristan Boureau , Sébastien Carrère
Annual Review of Phytopathology, 2016, 54 (1), pp.163-187. ⟨10.1146/annurev-phyto-080615-100147⟩
Journal articles hal-03383508v1
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Effector polymorphisms of the sunflower downy mildew pathogen Plasmopara Halstedii and their use to identify pathotypes from field isolates

Quentin Gascuel , Amandine A. Bordat , Erika Sallet , Nicolas Pouilly , Sebastien Carrere
PLoS ONE, 2016, 11 (2), pp.1-19. ⟨10.1371/journal.pone.0148513⟩
Journal articles hal-02632845v1
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Draft genome sequences of five Pseudomonas syringae pv. actinidifoliorum strains isolated in France

Amandine Cunty , Sophie Cesbron , Martial Briand , Sebastien Carrere , Françoise Poliakoff
Brazilian Journal of Microbiology, 2016, 47 (3), pp.529-530. ⟨10.1016/j.bjm.2016.04.023⟩
Journal articles hal-01415259v1
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High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants

I. Robène , Stéphanie S. Bolot , Olivier Pruvost , Matthieu Arlat , Laurent Noel
Genome Announcements, 2016, 4 (5), pp.e00902-16. ⟨10.1128/genomeA.00902-16⟩
Journal articles hal-02629928v1

Comparative analysis of expressed CRN and RXLR effectors from two Plasmopara species causing grapevine and sunflower downy mildew

Pedro-Felipe Mestre Artigues , Sebastien Carrere , Jerome Gouzy , Marie-Christine Piron , Denis D. Tourvieille de Labrouhe
Plant Pathology, 2016, 65 (5), pp.767-781. ⟨10.1111/ppa.12469⟩
Journal articles hal-02640035v1
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Full genome sequence analysis of two isolates reveals a novel Xanthomonas species close to the sugarcane pathogen Xanthomonas albilineans

Isabelle Pieretti , Stéphane Cociancich , Stéphanie Bolot , Sébastien Carrere , Alexandre Morisset
Genes, 2015, 6 (3), pp.714-733. ⟨10.3390/genes6030714⟩
Journal articles hal-01594241v1
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Draft Genome Sequence ofXanthomonas translucenspv. graminis Pathotype Strain CFBP 2053

Céline Pesce , Stéphanie Bolot , Edwige Berthelot , Claude Bragard , Sebastien Cunnac
Genome Announcements, 2015, 3 (5), pp.e01174-15. ⟨10.1128/genomeA.01174-15⟩
Journal articles hal-01594261v1
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Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome.

Brice Roux , Stéphanie Bolot , Endrick Guy , Nicolas Denancé , Martine Lautier
BMC Genomics, 2015, 16 (1), pp.975. ⟨10.1186/s12864-015-2190-0⟩
Journal articles hal-01455988v1

Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species

Susete Alves Carvalho , Gregoire G. Aubert , Sebastien Carrere , Corinne Cruaud , Anne-Lise Brochot
Plant Journal, 2015, 84 (1), pp.1-19. ⟨10.1111/tpj.12967⟩
Journal articles hal-02631162v1

Combined genetic and transcriptomic analysis reveals three major signalling pathways activated by Myc-LCOs in Medicago truncatula

Céline Camps , Marie-Françoise Jardinaud , David Rengel , Sebastien Carrere , Christine Hervé
New Phytologist, 2015, 208 (1), pp.224-240. ⟨10.1111/nph.13427⟩
Journal articles hal-02632553v1
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ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass)

Jeanne Aude Christiane Gardin , Jerome Gouzy , Sebastien Carrere , Christophe C. Delye
BMC Genomics, 2015, 16, ⟨10.1186/s12864-015-1804-x⟩
Journal articles hal-02635227v1

RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance

Arnaud Duhoux , Sebastien Carrere , Jerome Gouzy , Ludovic Bonin , Christophe C. Delye
Plant Molecular Biology, 2015, 87 (4-5), pp.473-487. ⟨10.1007/s11103-015-0292-3⟩
Journal articles hal-02635561v1
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Genome Sequences of the Race 1 and Race 4 Xanthomonas campestris pv. campestris Strains CFBP 1869 and CFBP 5817.

Stéphanie Bolot , Aude Cerutti , Sebastien Carrere , Matthieu Arlat , Marion Le Saux
Genome Announcements, 2015, 3 (5), ⟨10.1128/genomeA.01023-15⟩
Journal articles hal-01455989v1
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Whole-genome sequencing of 10 Pseudomonas syringae strains representing different host range spectra

Claudia Bartoli , Sebastien Carrere , Jay Ram Lamichhane , Leonardo Varvaro , Cindy E. Morris
Genome Announcements, 2015, 3 (2), pp.e00379-15. ⟨10.1128/genomeA.00379-15⟩
Journal articles hal-02632911v1
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High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541.

Céline Pesce , Stéphanie Bolot , Sébastien Cunnac , Perrine Portier , Marion Le Saux
Genome Announcements, 2015, 3 (1), ⟨10.1128/genomeA.01574-14⟩
Journal articles hal-01209993v1
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RNA-Seq profile of flavescence dorée phytoplasma in grapevine.

Simona Abbà , Luciana Galetto , Patricia Carle , Sebastien Carrere , Massimo Delledonne
BMC Genomics, 2014, 15 (1), pp.1-13. ⟨10.1186/1471-2164-15-1088⟩
Journal articles hal-02636852v1
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Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369.

Lionel Gagnevin , Stéphanie Bolot , J L Gordon , Olivier Pruvost , Christian Vernière
Genome Announcements, 2014, 2 (4), ⟨10.1128/genomeA.00727-14⟩
Journal articles hal-01209994v1
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The plant pathogen Xanthomonas campestris pv. campestris exploits N-acetylglucosamine during infection.

Alice Boulanger , Claudine Zischek , Martine Lautier , Stevie Jamet , Pauline Rival
mBio, 2014, 5 (5), pp.e01527-14. ⟨10.1128/mBio.01527-14⟩
Journal articles hal-02637892v1
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Genome Sequencing of Ralstonia solanacearum Biovar 3, Phylotype I, Strains Rs-09-161 and Rs-10-244, Isolated from Eggplant and Chili in India.

Raman Ramesh , Sapna Gaitonde , Gauri Achari , Trupti Asolkar , Narendra Pratap Singh
Genome Announcements, 2014, 2 (3), ⟨10.1128/genomeA.00323-14⟩
Journal articles hal-02629436v1

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

Brice Roux , Nathalie Rodde , Marie-Françoise Jardinaud , Ton Timmers , Laurent Sauviac
Plant Journal, 2014, 77 (6), pp.817-837. ⟨10.1111/tpj.12442⟩
Journal articles hal-03082945v1
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Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides

Monique Royer , Ralf Koebnik , Melanie Marguerettaz , Valerie Barbe , Guillaume P. Robin
BMC Genomics, 2013, 14, ⟨10.1186/1471-2164-14-658⟩
Journal articles hal-01209938v1
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Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

Armelle Darrasse , Sebastien Carrere , Valérie Barbe , Tristan Boureau , Mario L. Arrieta-Ortiz
BMC Genomics, 2013, 14, pp.761--790. ⟨10.1186/1471-2164-14-761⟩
Journal articles hal-01199326v1
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Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex

Nemo Peeters , Sebastien Carrere , Maria Anisimova , Laure Plener , Anne-Claire Cazalé
BMC Genomics, 2013, 14, ⟨10.1186/1471-2164-14-859⟩
Journal articles hal-02647666v1
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Natural genetic variation of Xanthomonas campestris pv. campestris pathogenicity on Arabidopsis revealed by association and reverse genetics

Endrick Guy , Anne Genissel , Ahmed Hajri , Matthieu Chabannes , Perrine David
mBio, 2013, 4 (3), pp.e00538. ⟨10.1128/mBio.00538-12⟩
Journal articles hal-01199307v1
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High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836.

Marie Agnes Jacques , Stéphanie S. Bolot , Erika Charbit , Armelle Darrasse , Martial Briand
Genome Announcements, 2013, 1 (6), ⟨10.1128/genomeA.01035-13⟩
Journal articles hal-02649259v1
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High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119.

Armelle Darrasse , Stéphanie S. Bolot , Laurana Serres Giardi , Erika Charbit , Tristan Boureau
Genome Announcements, 2013, 1 (6), ⟨10.1128/genomeA.01036-13⟩
Journal articles hal-02648487v1

Genome Sequences of Three Atypical Xanthomonas campestris pv. campestris Strains, CN14, CN15, and CN16.

Stéphanie S. Bolot , Brice Roux , Sebastien Carrere , Bo-Le Jiang , Ji-Liang Tang
Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00465-13⟩
Journal articles hal-02645772v1
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Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151

Mario L. Arrieta-Ortiz , Luis M. Rodríguez-R , Alvaro L. Pérez-Quintero , Lucie Poulin , Ana C. Díaz
PLoS ONE, 2013, 8 (11), pp.e79704. ⟨10.1371/journal.pone.0079704⟩
Journal articles hal-01199314v1
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Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642.

Stéphanie S. Bolot , Alejandra Munoz Bodnar , Sébastien Cunnac , Erika Ortiz , Boris Szurek
Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00679-13⟩
Journal articles hal-02642222v1

Genome Sequence of Xanthomonas campestris pv. campestris Strain Xca5.

Stéphanie S. Bolot , Endrick Guy , Sebastien Carrere , Valérie Barbe , Matthieu Arlat
Genome Announcements, 2013, 1 (1), ⟨10.1128/genomeA.00032-12⟩
Journal articles hal-02649490v1
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High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains.

Sébastien Cunnac , Stéphanie S. Bolot , Natalia Forero Serna , Erika Ortiz , Boris Szurek
Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00674-13⟩
Journal articles hal-02643147v1

The xylan utilization system of the plant pathogen Xanthomonas campestris pv campestris controls epiphytic life and reveals common features with oligotrophic bacteria and animal gut symbionts

Guillaume Dejean , Servane Blanvillain-Baufume , Alice Boulanger , Armelle Darrasse , Thomas Duge de Bernonville
New Phytologist, 2013, 198 (3), pp.899 - 915. ⟨10.1111/nph.12187⟩
Journal articles hal-01209910v1
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Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik
BMC Genomics, 2012, 13 (1), pp.658--680. ⟨10.1186/1471-2164-13-658⟩
Journal articles hal-01199327v1
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A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments

David Rengel , Sandrine Arribat , Pierre Maury , Marie-Laure Martin-Magniette , Thibault Hourlier
PLoS ONE, 2012, 7 (10), pp.e45249. ⟨10.1371/journal.pone.0045249⟩
Journal articles hal-02644423v1
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Microsatellite markers for characterization of native and introduced populations of Plasmopara viticola, the causal agent of grapevine downy mildew

Mélanie Rouxel , Daciana Papura , Marilise Nogueira , Virginie Machefer , Damien Dezette
Applied and Environmental Microbiology, 2012, 78 (7), pp.6337-6340. ⟨10.1128/AEM.01255-12⟩
Journal articles hal-02650268v1

Two direct targets of cytokinin signaling regulate symbiotic nodulation in Medicago truncatula.

Federico Ariel , Marianne Brault-Hernandez , Carole Laffont , Emeline Huault , Mathias Brault
The Plant cell, 2012, 24 (9), pp.3838-52. ⟨10.1105/tpc.112.103267⟩
Journal articles hal-00856169v1
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Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences

Falah As-Sadi , Sebastien Carrere , Quentin Gascuel , Thibault Hourlier , David Rengel
BMC Genomics, 2011, 12, pp.498. ⟨10.1186/1471-2164-12-498⟩
Journal articles hal-02648363v1

'Flavescence doree' phytoplasma genome: a metabolism oriented towards glycolysis and protein degradation

Patricia Carle , Sylvie Malembic-Maher , Nathalie Arricau-Bouvery , Delphine Desque , Sandrine Eveillard
Bulletin of Insectology, 2011, 64, pp.S13-S14
Journal articles hal-02649904v1

Partial Chromosome Sequence of Spiroplasma citri reveals extensive viral invasion and important gene decay

Patricia Carle , Colette Saillard , Nathalie Carrère , Sebastien Carrere , Sybille Duret
Applied and Environmental Microbiology, 2010, 76 (11), pp.3420-3426. ⟨10.1128/AEM.02954-09⟩
Journal articles hal-02658836v1
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Specific Genes from the Potato Brown Rot Strains of Ralstonia solanacearum and Their Potential Use for Strain Detection

Alice Guidot , Mounira Elbaz , Sebastien Carrere , M.I. Siri , M.J. Pianzzola
Phytopathology, 2009, 99 (9), pp.1105-1112. ⟨10.1094/PHYTO-99-9-1105⟩
Journal articles hal-02668604v1
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FrameDP: sensitive peptide detection on noisy matured sequences

Jerome Gouzy , Sebastien Carrere , Thomas Schiex
Bioinformatics, 2009, 25 (5), pp.670-671. ⟨10.1093/bioinformatics/btp024⟩
Journal articles hal-02665259v1
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Mobyle: a new full web bioinformatics framework

Bertrand Néron , Hervé Ménager , Corinne Maufrais , Nicolas Joly , Julien Maupetit
Bioinformatics, 2009, 25 (22), pp.3005-3011. ⟨10.1093/bioinformatics/btp493⟩
Journal articles hal-01287963v1
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The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae.

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik
BMC Genomics, 2009, 10, pp.616. ⟨10.1186/1471-2164-10-616⟩
Journal articles hal-00730090v1

Genome sequence of the -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

Claire Amadou , Géraldine Pascal , Sophie Mangenot , Michelle Glew , Cyril Bontemps
Genome Research, 2008, 18 (9), pp.1472 - 1483. ⟨10.1101/gr.076448.108⟩
Journal articles hal-01655676v1
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The abundant extrachromosomal DNA content of the Spiroplasma citri GII3-3X genome

Colette Saillard , Patricia Carle , Sybille Duret Nurbel , Raphael Henri , Nabil Killiny
BMC Genomics, 2008, 9, 195p1-195p13. ⟨10.1186/1471-2164-9-195⟩
Journal articles hal-02664161v1

Genomic Structure and Phylogeny of the Plant Pathogen Ralstonia solanacearum Inferred from Gene Distribution Analysis

Alice Guidot , Philippe Prior , Jens Schoenfeld , Sébastien Carrere , Stéphane Genin
Journal of Bacteriology, 2007, 189, pp.377-387. ⟨10.1128/JB.00999-06⟩
Journal articles hal-02936820v1
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The ProDom database of protein domain families: more emphasis on 3D

Catherine Bru , Emmanuel Courcelle , Sébastien Carrère , Yoann Beausse , Sandrine Dalmar
Nucleic Acids Research, 2005, 33 (Database issue), pp.D212-D215. ⟨10.1093/nar/gki034⟩
Journal articles hal-01214150v1

Microarray-Based Detection and Typing of the Rhizobium Nodulation Gene nodC: Potential of DNA Arrays To Diagnose Biological Functions of Interest

Cyril Bontemps , Geoffroy Golfier , Carine Gris-Liebe , Sebastien Carrere , Luc Talini
Applied and Environmental Microbiology, 2005, 71 (12), pp.8042 - 8048. ⟨10.1128/AEM.71.12.8042–8048.2005⟩
Journal articles hal-01655599v1

A TnSeq approach to study the genetic bases of Xanthomonas campestris pv. campestris adaptation to in vitro and in planta conditions

Julien Luneau , M. Baudin , Sébastien Carrere , Olivier Bouchez , Marie-Françoise Jardinaud
18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom
Conference papers hal-02738045v1

A TnSeq approach to study the genetic bases of Xanthomonas campestris pv. campestris adaptation to in vitro and in planta conditions.

Julien Luneau , Mael Baudin , Sébastien Carrere , Olivier Bouchez , Marie-Françoise Jardinaud
Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), Jul 2019, Glasgow, United Kingdom
Conference papers hal-02361887v1

The Ralstonia solanacearum PopP2 effector exploits immune-associated MAPKs to potentiate its virulence functions and evade host recognition

Maxime Escouboué , Gaëlle Huet , Céline Vicédo , A. Jauneau , Fabrice Roux
18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom
Conference papers hal-02737637v1

Signalling dynamics of the RRS1-RPS4 NLR immune complex at the chromatin during ETI

Elisabeth Grund , B. Zhou , Patrick Dabos , X. Sun , Sébastien Carrere
18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom
Conference papers hal-02736505v1

Integrated strategy to unravel the biological role of evolutionary conserved type III effectors from xylem-colonizing bacteria

Manuel Gonzalez Fuente , Celine Rembliere , Sébastien Carrere , Noé Arroyo Velez , Nemo Peeters
18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom
Conference papers hal-02735402v1

A whole-transcriptome approach to unravel non-target-site-based resistance to ALS inhibitors in Ambrosia artemisiifolia

Christophe Délye , Lucie Meyer , Sébastien Carrere , Jerome Gouzy , Fanny Pernin
18. European Weed Research Society Symposium, EWRS 2018, "New approaches for smarter weed management", Jun 2018, Ljubljana, Slovenia
Conference papers hal-02733955v1

Long ncRNAs and epigenetic regulations are attractive candidate elements for the orchestration of symbiotic gene expression in M. truncatula.

Yann Pecrix , S Evan Staton , Erika Sallet , Christine Lelandais Briere , Sandra Moreau
International plant epigenetics symposium, ERC (European Research Council) and the RFI Objectif Végétal regional programme, Oct 2018, Angers, France
Conference papers hal-03355269v1

Pathobiome entomopathogenic nematodes Development of methodology for a taxonomic assignation at the species level in the the pathobiome of entomopathogenic nematodes from the Steinernema genus

Jean-Claude Ogier , Sophie Gaudriault , Pauline Heuillard , Olivier Zemb , Sebastien Carrere
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Conference papers hal-01603194v1
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Le pois, espèce modèle ?

Judith Burstin , Nadim N. Tayeh , Anthony Klein , Jonathan Kreplak , Françoise Jacquin
1. Rencontres Francophones sur les Légumineuses (RFL1), Institut National de la Recherche Agronomique (INRA). FRA., May 2016, Dijon, France
Conference papers hal-02741352v1
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Pea genomic tools for functional and structural approaches

Nadim N. Tayeh , Susete Alves Carvalho , Christelle Aluome , Sébastien Carrere , Jonathan Kreplak
Mendel's legacy - 150 years of the genius of genetics, Masaryk University. CZE., Sep 2015, Brno, Czech Republic
Conference papers hal-02743963v1

Pea in the genomic era

Judith Burstin , Susete Alves Carvalho , Christelle Aluome , Nadim Tayeh , Anne-Lise Brochot
Séminaire IFR AIB (Agrobiosciences, Interactions & Biodiversité), Feb 2015, Toulouse, France, 24 février 2015, France
Conference papers hal-01536570v1

Making sense out of phytoviral metagenomics: what have we learned from the Kerguelen Islands phytovirome?

Thierry T. Candresse , Armelle Marais , Sébastien Theil , Chantal Faure , Laurence Svanella-Dumas
15. Rencontres de Virologie Végétale (RVV), Jan 2015, Aussois, France
Conference papers hal-02798683v1

Comparative genomics and transcriptomics of #Xanthomonas campestris# : Session 3- Physiologie, génétique et génomique des bactéries

Stéphanie Bolot , Brice Roux , Endrick Guy , Nicolas Denancé , Martine Lautier
11èmes Rencontres Plantes-Bactéries, Feb 2014, Aussoies, France. pp.40
Conference papers hal-01456725v1

Pea in the genomic era

Susete Alves Carvalho , Christelle Aluome , Gregoire G. Aubert , Corinne Cruaud , Anthony Klein
2. Adam Kondorosi Symposium "Frontiers in Legume Biology",, Dec 2014, Gif-sur-Yvette, France
Conference papers hal-02797923v1

Characterisation of rye-grass (Lolium sp.) transcriptome-wide response to ALS-inhibiting herbicides

Arnaud Duhoux , Jerome Gouzy , Sebastien Carrere , Ludovic Bonin , Christophe C. Delye
European Weed Research Society (EWRS) workshop "Herbicide-Resistance in Europe: challenges, opportunities and threats", European Weed Research Society (EWRS). GBR., May 2014, Frankfurt, Germany. 69 p
Conference papers hal-02739894v1

Genome mining reveals a novel and promising NRPS gene cluster in #Xanthomonas albilineans#, #Xanthomonas oryzae# and #Xanthomonas translucens#

Monique Royer , Ralf Koebnik , Melanie Marguerettaz , Valérie Barbe , Guillaume P. Robin
59° Congresso Brasileiro de Genética, Sep 2013, Águas de Lindóia, Brazil
Conference papers hal-01456738v1

Diagnostic de la résistance non liée à la cible chez les ray grass (Lolium sp.) : développement de tests rapides et fiables

Arnaud Duhoux , Jerome Gouzy , Sébastien Carrère , L. Bonin , Christophe Délye
22. Conférence du Columa, Journées internationales sur la lutte contre les mauvaises herbes, Association Française de Protection des Plantes (AFPP). FRA., Dec 2013, Dijon, France. 45 p
Conference papers hal-02746199v1

A transcriptomics-based approach enables the first identification of candidate genes involved in non-target-site-based resistance to herbicides in a grass weed (Alopecurus myosuroides)

Jeanne Gardin , Roland Beffa , Jerome Gouzy , Sébastien Carrère , Christophe C. Delye
Global Herbicide Resistance Challenge Conference, Feb 2013, Perth, Australia. 115 p
Conference papers hal-02747324v1
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Alopecurus myosuroides transcriptome database (ALOMYBase): unravelling the genetic bases of non-target-site-based resistance to herbicides

Jeanne Gardin , Jerome Gouzy , Sebastien Carrere , Roland Beffa , Christophe C. Delye
16. European Weed Research Symposium (EWRS), European Weed Research Society (EWRS). GBR., Jun 2013, Samsun, Turkey. pp.259
Conference papers hal-02749853v1

Genomic comparison within Xenorhabdus genus: X. poinarii species characterized by a small genome and attenuated virulence toward insects

Jean-Claude Ogier , Sylvie Pages , Gaelle Bisch , Sebastien Carrere , Helene Chiapello
5. Congress of European Microbiologists (FEMS 2013), Jul 2013, Leipzig, Allemagne
Conference papers hal-01837266v1

Contrasted patterns of phytoviral metagenomes in wild and agricultural environments

Thierry T. Candresse , Armelle Marais , Chantal Faure , Sébastien Theil , Laurence Svanella-Dumas
19. Australasian Plant Pathology Conference, Nov 2013, Auckland, New Zealand
Conference papers hal-02809610v1

Inventory and evolution of type III effectors in the Ralstonia solanacearum species complex

Nemo Peeters , Sebastien Carrere , Anne-Claire Noel , Stéphane Genin , Maria Anisimova
COST SUSTAIN FA1208, Oct 2013, Birnam, United Kingdom
Conference papers hal-01131069v1

Identification de mécanismes de résistance non liée à la cible grâce à la transcriptomique

Jeanne Gardin , Sébastien Carrère , Jerome Gouzy , B. Couloume , C. Engel
22. Conférence du Columa, Journées internationales sur la lutte contre les mauvaises herbes, Association Française de Protection des Plantes (AFPP). FRA., Dec 2013, Dijon, France. 45 p
Conference papers hal-02747026v1

Genome and transcriptome analysis to reveal adaptation to new environments and hosts

Lionel Gagnevin , Brice Roux , Stéphanie Bolot , Sebastien Carrere , Erika Charbit
APS-MSA Joint Meeting, Aug 2013, Austin, Texas, United States
Conference papers hal-01209932v1

Contrasted patterns of phytoviral metagenomes in wild and agricultural environments

Thierry T. Candresse , Armelle Marais , Chantal Faure , Sébastien Theil , Laurence Svanella-Dumas
EMBO Workshop “Green viruses, from gene to landscape”, Sep 2013, Hyères-les-Palmiers, France
Conference papers hal-02810681v1
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Transcriptome screening-based identification of candidate genes endowing non-target-site-based resistance to herbicides inhibiting ALS in Lolium sp

Arnaud Duhoux , Jerome Gouzy , Sebastien Carrere , Christophe C. Delye
16. European Weed Research Symposium (EWRS), European Weed Research Society (EWRS). GBR., Jun 2013, Samsun, Turkey. pp.269
Conference papers hal-02746079v1

Use of 454 pyrosequencing for the fast and efficient characterization of known and novel viral agents in Prunus materials

Thierry T. Candresse , Armelle Marais , Chantal Faure , Sebastien Carrere , Pascal Gentit
22. International conference on virus and other graft transmissible diseases of fruit crops, Jun 2012, Rome, Italy. p. 47
Conference papers hal-02803408v1

Genome sequencing of Xanthomonas axonopodis pv. phaseoli CFBP4834-R reveals that flagellar motility is not a general feature of xanthomonads. [Abstract]

Armelle Darrasse , Sébastien Carrere , Valérie Barbe , Tristan Bourreau , Adriana Bernal
4th Xanthomonas Genomics Conference, Jul 2012, Angers, France
Conference papers hal-01202944v1

Progrès et contraintes pour le développement de la métagénomique phytovirale

Thierry T. Candresse , Armelle Marais , Chantal Faure , Laurence Svanella-Dumas , Sebastien Carrere
Journées des Microbiologistes de l'INRA 2012, Nov 2012, L'Isle -sur-la-Sorgue, France. 1 p
Conference papers hal-02810961v1

Genomic resources for functional analysis in Medicago truncatula and related crop species

Frederic Debellé , C. Belser , J.M. Aury , K. Labadie , Brice Roux
6. International Conference on Legume Genetics and Genomics, International Crops Research Institute for the Semi-Arid Tropics, CGIAR (ICRISAT). Patancheru, IND., Oct 2012, Hyderabad, India
Conference papers hal-02747944v1

Development of genomic resources for Medicago truncatula and related legume crops

Frederic Debellé , Marion Verdenaud , Anne-Marie Dudez , Nicolas Samson , Olivier Saurat
Model Legume Congress 2011, Institut National Polytechnique (Toulouse) (Toulouse INP). Castanet Tolosan, FRA., May 2011, Sainte Maxime, France
Conference papers hal-02746654v1

The complete genome sequence of Xanthomonas albilineans provides insights into pathogenicity of this sugarcane pathogen and allows further assessments of the large diversity within this species

Isabelle Pieretti , Stéphane Cociancich , Valerie Barbe , Sébastien Carrere , Ralf Koebnik
5th European conference on prokaryotic and fungal genomics, Sep 2011, Göttingen, Germany
Conference papers hal-01202957v1

La séquence complète du génome de Xanthomonas albilineans apporte un éclairage nouveau sur l'évolution des Xanthomonadaceae dont l'habitat est limité au xylème

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sebastien Carrere , Ralf Koebnik
7. Colloque National de la Société Française de Phytopathologie, Jun 2009, Lyon, France. 1 p
Conference papers hal-02824029v1

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sebastien Carrere , Ralf Koebnik
14. International Congress on Molecular Plant-Microbe Interactions, Jul 2009, Québec City, Canada. 2 p
Conference papers hal-02817753v1

La séquence du génome de Xanthomonas albilineans dévoile des particularités surprenantes chez cette bactérie pathogène de la canne à sucre

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik
8èmes Rencontres plantes-bactéries, Jan 2008, Aussoies, France
Conference papers hal-01202965v1

BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network

Marc Wessner , Martin Senger , Franck Samson , Philippe Picouet , François Moreews
Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jun 2008, Lille, France
Conference papers inria-00327528v1

The partial chromosome sequence of Spiroplasma citri strain GII3-3X

Patricia Carle , Colette Saillard , Alain A. Blanchard , Nathalie Carrère , Sebastien Carrere
16. International congress of the International Organization for Mycoplasmology, Jul 2006, Cambridge, United Kingdom
Conference papers hal-02753198v1

FUNCTIONAL CHARACTERIZATION OF THE XANTHOMONAS CAMPESTRIS TALOME

Corinne Audran , Charleux Brice , Carlos Andrés Zárate-Chaves , Nicolas Denancé , Ivanna Fuentes
ICPP2023, Aug 2023, lyon, France
Conference poster hal-04209771v1

INVOLVEMENT OF TALES IN XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS PATHOGENICITY IN CAULIFLOWER

Charleux Brice , Carine Gris , Ivanna Fuentes , Caroline Bellenot , Marie‐françoise Jardinaud
ICPP2023, Aug 2023, lyon, France
Conference poster hal-04208368v1

Identification de gènes liés à la résistance aux herbicides non liée à la cible chez les Ivraies : vers des tests « moléculaires » de diagnostic

Christophe Délye , Arnaud Duhoux , Sebastien Carrere , Ludovic Bonin
23. Conference du COLUMA - Journées Internationales sur la Lutte contre les Mauvaises Herbes, Dec 2016, Dijon, France. AFPP - Association Française de Protection des Plantes, pp.220-229, 2016
Conference poster hal-01604115v1
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Recent pea genomic resources will enhance complementary improvement strategies in this crop

Judith Burstin , Susete Alves Carvalho , Nadim N. Tayeh , Christelle Aluome , Virginie Bourion
6. International Food Legumes Research Conference (IFLRC VI), Jul 2014, Saskatoon, Canada. , 225 p., 2014
Conference poster hal-02743375v1

Analysis of Amalgamaviridae diversity in the Kerguelen Islands ecosystem using two different strategies for metagenome analysis

Thierry T. Candresse , Armelle Marais , Chantal Faure , Laurence Svanella-Dumas , Sebastien Carrere
14. Rencontres de Virologie Végétale, Jan 2013, Aussois, France. p. 56, 2013
Conference poster hal-02805457v1

Génomique comparative dans le genre Xenorhabdus : l'espèce X. Poinarii caractérisée par un pouvoir pathogène atténué et un génome de petite taille

Jean-Claude Ogier , Sylvie Pages , Patrick Tailliez , Gaëlle Bisch , Corinne Teyssier
Journées des Microbiologistes de l’INRA 2012, Nov 2012, L'Isle-sur-la-Sorgue, France. , 2012
Conference poster hal-02810864v1

The partial chromosome sequence of Spiroplasma citri strain GII3-3X

Patricia Carle , Colette Saillard , Alain A. Blanchard , N Carrere , Sébastien Carrère
16th International Congress of the International Organization for Mycoplasmology, 2006, Cambridge, United Kingdom. pp.Inconnu, 2006
Conference poster hal-02816748v1