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Sebastien Duplessis

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Researcher identifiers
  • IdHAL sebastien-duplessis
  • ResearcherId : G-4150-2011
  • ORCID 0000-0002-2072-2989
  • Google Scholar : https://scholar.google.com/citations?user=eUEKPngAAAAJ&hl=en
  • IdRef : 144092948
  • ResearcherId : http://www.researcherid.com/rid/G-4150-2011

Presentation

**Director of the Tree-Microbe Interactions Department (UMR 1136 IAM)** Université de Lorraine / INRAE Centre Grand-Est, Nancy - Labex ARBRE **Bio:** BSc in Biology at Bordeaux University (1995). MSc in Cell Biology and Physiology (1998) and PhD in Plant and Forest Sciences (2001) at Nancy University. Silver medal of the French Academy of Agriculture (2001). Hired research scientist in 2001 at INRA. 1 year sabbatical at Exeter University (2003-2004). HDR diploma from Lorraine University (2012). Region Lorraine Researcher Award (2012). Académie Stanislas Zivi Award (2012). INRA Research Director DR2 (2013). Appointed head of the Ecogenomic of interactions team in 2013, appointed Deputy head of the Tree-Microbe Interactions department in 2019. Appointed head of the INRAE/Lorraine University Tree-Microbe Interactions Department in January 2020. My early research was on functional genomics of the ectomycorrhizal symbiosis in the group of Francis Martin (INRA Nancy). I spent 1 year in Nick Talbot’s lab at Exeter University to extend my background in molecular phytopathology (2003-2004), and since 2005, my research in the Ecogenomics team has mostly focused on the poplar-poplar rust interaction. I am currently coordinating a transversal scientific project called Mechanism and evolution of the poplar-poplar rust interaction within the Tree-Microbe Interactions department at INRAE Nancy, and co-leading the WP1 of the Labex ARBRE (Integrative Biology) with Nicolas Rouhier. **Resume:** My research at INRA aims at elucidating how trees respond to pathogens and how biotroph pathogens are able to develop and feed on trees. Our model is the poplar-poplar rust pathosystem. I mainly use genomics and functional approaches to identify and characterize molecular determinants involved in disease resistance and defense response in poplar, and pathogenicity in the rust fungus Melampsora larici-populina as my main model pathosystem. In recent years, I have diversified my research in the frame of international projects using genomics in order to better understand the biology of rust fungi. Progress made in understanding rust fungal biotrophy will help setting new strategies to contain rust diseases.

Publications

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A point mutation and large deletion at the candidate avirulence locus AvrMlp7 in the poplar rust fungus correlate with poplar RMlp7 resistance breakdown

Clémentine Louet , Méline Saubin , Axelle Andrieux , Antoine Persoons , Mathilde Gorse
Molecular Ecology, 2023, 32 (10), pp.2472-2483. ⟨10.1111/mec.16294⟩
Journal articles hal-03510966v1
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A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy

Pamela Guerillot , Asaf Salamov , Clémentine Louet , Emmanuelle Morin , Pascal Frey
Phytopathology, 2023, 113 (2), pp.252-264. ⟨10.1094/PHYTO-04-22-0128-R⟩
Journal articles hal-03847696v1
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Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

Yogesh K Gupta , Francismar C Marcelino-Guimarães , Cécile Lorrain , Andrew Farmer , Sajeet Haridas
Nature Communications, 2023, 14 (1), pp.1835. ⟨10.1038/s41467-023-37551-4⟩
Journal articles hal-04143167v1
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Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina

Antoine Persoons , Agathe Maupetit , Clémentine Louet , Axelle Andrieux , Anna Lipzen
Genome Biology and Evolution, 2022, 14 (1), 14 p. ⟨10.1093/gbe/evab279⟩
Journal articles hal-03606205v1

A decade after the first Pucciniales genomes: A bibliometric snapshot of (post) genomics studies in three model rust fungi

Benjamin Petre , Sébastien Duplessis
Frontiers in Microbiology, 2022, 13, pp.989580. ⟨10.3389/fmicb.2022.989580⟩
Journal articles hal-03847673v1
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A survey of highly influential studies on plant pathogen effectors during the last two decades (2000-2020).

Clémentine Louet , Sébastien Duplessis , Pascal Frey , Benjamin Petre
Frontiers in Plant Science, 2022, 13, pp.920281. ⟨10.3389/fpls.2022.920281⟩
Journal articles hal-03849040v1
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Elevated Ozone Concentration and Nitrogen Addition Increase Poplar Rust Severity by Shifting the Phyllosphere Microbial Community

Siqi Tao , Yunxia Zhang , Chengming Tian , Sébastien Duplessis , Naili Zhang
Journal of Fungi, 2022, 8 (5), pp.523. ⟨10.3390/jof8050523⟩
Journal articles hal-03847571v1

Host Adaptation and Virulence in Heteroecious Rust Fungi

Sébastien Duplessis , Cecile Lorrain , Benjamin Petre , Melania Figueroa , Peter Dodds
Annual Review of Phytopathology, 2021, 59 (1), pp.403-422. ⟨10.1146/annurev-phyto-020620-121149⟩
Journal articles hal-03606036v1

Two stripe rust effectors impair wheat resistance by suppressing import of host Fe–S protein into chloroplasts

Xiaodong Wang , Tong Zhai , Xingmin Zhang , Chunlei Tang , Rui Zhuang
Plant Physiology, 2021, 187 (4), pp.2530-2543. ⟨10.1093/plphys/kiab434⟩
Journal articles hal-03606061v1

Host-specialized transcriptome of plant-associated organisms

Benjamin Petre , Cécile Lorrain , Eva Stukenbrock , Sébastien Duplessis
Current Opinion in Plant Biology, 2020, 56, pp.81-88. ⟨10.1016/j.pbi.2020.04.007⟩
Journal articles hal-02990650v1

Transcriptome Analysis of Apple Leaves Infected by the Rust Fungus Gymnosporangium yamadae at Two Sporulation Stages

Si-Qi Tao , Lucas Auer , Emmanuelle Morin , Ying-Mei Liang , Sébastien Duplessis
Molecular Plant-Microbe Interactions, 2020, 33 (3), pp.444-461. ⟨10.1094/MPMI-07-19-0208-R⟩
Journal articles hal-02989882v1

Advances in understanding obligate biotrophy in rust fungi

Cécile Lorrain , Karen Cristine Gonçalves dos Santos , Hugo Germain , Arnaud Hecker , Sébastien Duplessis
New Phytologist, 2019, 222 (3), pp.1190-1206. ⟨10.1111/nph.15641⟩
Journal articles hal-02181079v1
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Comparative transcriptomics of Gymnosporangium spp. teliospores reveals a conserved genetic program at this specific stage of the rust fungal life cycle

Si-Qi Tao , Bin Cao , Emmanuelle Morin , Ying-Mei Liang , Sébastien Duplessis
BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-6099-x⟩
Journal articles hal-02905570v1
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Structural genomics applied to the rust fungus Melampsora larici-populina reveals two candidate effector proteins adopting cystine knot and NTF2-like protein folds

Karine de Guillen , Cécile Lorrain , Pascale Tsan , Philippe Barthe , Benjamin Petre
Scientific Reports, 2019, 9 (1), pp.18084. ⟨10.1038/s41598-019-53816-9⟩
Journal articles hal-02548559v1
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The Rust Fungus Melampsora larici-populina Expresses a Conserved Genetic Program and Distinct Sets of Secreted Protein Genes During Infection of Its Two Host Plants, Larch and Poplar

Cécile Lorrain , Clémence Marchal , Stéphane Hacquard , Christine Delaruelle , Jeremy Petrowski
Molecular Plant-Microbe Interactions, 2018, 31 (7), pp.695-706. ⟨10.1094/MPMI-12-17-0319-R⟩
Journal articles hal-01893935v1

Show me the way

Cécile Lorrain , Benjamin Petre , Sébastien Duplessis
Current Opinion in Microbiology, 2018, 46, pp.19-25. ⟨10.1016/j.mib.2018.01.016⟩
Journal articles hal-02154538v1
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Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng , Hui Sun , Eeva J. Vainio , Tommaso Raffaello , Andriy Kovalchuk
BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-4610-4⟩
Journal articles hal-01844924v1

Infection assays in Arabidopsis reveal candidate effectors from the poplar rust fungus that promote susceptibility to bacteria and oomycete pathogens

Hugo Germain , David L Joly , Caroline Mireault , Mélodie B Plourde , Claire Letanneur
Molecular Plant Pathology, 2018, 19 (1), pp.191-200. ⟨10.1111/mpp.12514⟩
Journal articles hal-01771813v1
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Oak genome reveals facets of long lifespan

Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat
Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩
Journal articles hal-01820559v1
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A rust fungal effector binds plant DNA and modulates transcription

Md Bulbul Ahmed , Karen Cristine Gonçalves Dos Santos , Ingrid Benerice Sanchez , Benjamin Petre , Cécile Lorrain
Scientific Reports, 2018, 8 (1), pp.1-14. ⟨10.1038/s41598-018-32825-0⟩
Journal articles hal-02548542v1

Computational Methods for Predicting Effectors in Rust Pathogens

Jana Sperschneider , Peter Dodds , Jennifer Taylor , Sébastien Duplessis
News (National Library of Medicine), 2017, pp.73-83. ⟨10.1007/978-1-4939-7249-4_7⟩
Journal articles hal-02989876v1

Phylogenetics and Phylogenomics of Rust Fungi

M. Catherine Aime , Alistair R. Mctaggart , Stephen J. Mondo , Sébastien Duplessis
Advances in Genetics, 2017, 100, pp.267-307. ⟨10.1016/bs.adgen.2017.09.011⟩
Journal articles hal-02626920v1
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Editorial: Genomics Research on Non-model Plant Pathogens: Delivering Novel Insights into Rust Fungus Biology

Guus Bakkeren , David. L. Joly , Sébastien Duplessis
Frontiers in Plant Science, 2016, 7, pp.216. ⟨10.3389/fpls.2016.00216⟩
Journal articles hal-01579570v1
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Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies

Benjamin Petre , Diane G O Saunders , Jan Sklenar , Cécile Lorrain , Ksenia V. Krasileva
PLoS ONE, 2016, 11 (2), pp.e0149035. ⟨10.1371/journal.pone.0149035⟩
Journal articles hal-01329212v1

Rust fungal effectors mimic host transit peptides to translocate into chloroplasts

Benjamin Petre , Cécile Lorrain , Diane G.O. Saunders , Joe Win , Jan Sklenar
Cellular Microbiology, 2016, 18 (4), pp.453-465. ⟨10.1111/cmi.12530⟩
Journal articles hal-02548525v1
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The Poplar Rust-Induced Secreted Protein (RISP) Inhibits the Growth of the Leaf Rust Pathogen Melampsora larici-populina and Triggers Cell Culture Alkalinisation

Benjamin Petre , Arnaud Hecker , Hugo Germain , Pascale Tsan , Jan Sklenar
Frontiers in Plant Science, 2016, 7, pp.e1001732. ⟨10.3389/fpls.2016.00097⟩
Journal articles hal-01579575v1
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Forest tree genomics: 10 achievements from the past 10 years and future prospects

Christophe Plomion , Catherine Bastien , Marie-Béatrice Bogeat-Triboulot , Laurent Bouffier , Annabelle Déjardin
Annals of Forest Science, 2016, 73 (1), pp.77-103. ⟨10.1007/s13595-015-0488-3⟩
Journal articles hal-01330031v1
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Effector-Mining in the Poplar Rust Fungus Melampsora larici-populina Secretome

Cécile Lorrain , Arnaud Hecker , Sébastien Duplessis
Frontiers in Plant Science, 2015, 6 (3), pp.597 - 608. ⟨10.3389/fpls.2015.01051⟩
Journal articles hal-01577939v1

Candidate Effector Proteins of the Rust Pathogen Melampsora larici-populina Target Diverse Plant Cell Compartments

Benjamin Petre , Diane G O Saunders , Jan Sklenar , Cécile Lorrain , Joe Win
Molecular Plant-Microbe Interactions, 2015, 28 (6), pp.689-700. ⟨10.1094/MPMI-01-15-0003-R⟩
Journal articles hal-01269166v1

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

Christophe Plomion , Jean-Marc Aury , Joëlle Amselem , Tina Alaeitabar , Valérie Barbe
Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩
Journal articles hal-01579667v1
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Genomic Patterns of Positive Selection at the Origin of Rust Fungi

Diogo N. Silva , Sébastien Duplessis , Pedro Talhinhas , Helena Azinheira , Octávio S. Paulo
PLoS ONE, 2015, 10 (12), pp.1-22. ⟨10.1371/journal.pone.0143959⟩
Journal articles hal-01269480v1
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Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

Michael H Perlin , Joelle J. Amselem , Eric Fontanillas , Su San Toh , Zehua Chen
BMC Genomics, 2015, 16 (461), ⟨10.1186/s12864-015-1660-8⟩
Journal articles hal-01186421v1
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On the current status of [i]Phakopsora pachyrhizi[/i] genome sequencing

Marco Loehrer , Alexander Vogel , Bruno Huettel , Richard Reinhardt , Vladimir Benes
Frontiers in Plant Science, 2014, 5 (377), 5 p. ⟨10.3389/fpls.2014.00377⟩
Journal articles hal-01268956v1
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Genome analysis of poplar LRR-RLP gene clusters reveals RISP, a defense-related gene coding a candidate endogenous peptide elicitor

Benjamin Petre , Stéphane Hacquard , Sébastien Duplessis , Nicolas Rouhier
Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00111⟩
Journal articles hal-02548502v1
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Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection

Pedro Talhinhas , Helena G. Azinheira , Bruno Vieira , Andreia Loureiro , Silvia Tavares
Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00088⟩
Journal articles hal-01268536v1
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The poplar Phi class glutathione transferase: expression, activity and structure of GSTF1

Henri Pégeot , Cha San Koh , Benjamin Petre , Sandrine Mathiot , Sébastien Duplessis
Frontiers in Plant Science, 2014, 5, article 712 (15 p.). ⟨10.3389/fpls.2014.00712⟩
Journal articles hal-01521321v1
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Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina

Michaël Pernaci , Stéphane de Mita , Axelle Andrieux , Jeremy Petrowski , Fabien Halkett
Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00454⟩
Journal articles hal-01269013v1

Effector proteins of rust fungi

Benjamin Petre , David L. Joly , Sébastien Duplessis
Frontiers in Plant Science, 2014, 5, pp.938-47. ⟨10.3389/fpls.2014.00416⟩
Journal articles hal-01579674v1
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Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

Antoine Persoons , Emmanuelle Morin , Christine Delaruelle , Thibaut Payen , Fabien Halkett
Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00450⟩
Journal articles hal-01269012v1
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Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes

Stéphane Hacquard , Christine Delaruelle , Pascal Frey , Emilie Tisserant , Annegret Kohler
Frontiers in Plant Science, 2013, 4, ⟨10.3389/fpls.2013.00456⟩
Journal articles hal-01268532v1

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

Ake Olson , Andrea Aerts , Fred Asiegbu , Lassaâd Belbahri , Ourdia Bouzid
New Phytologist, 2012, 194 (4), pp.1001-1013. ⟨10.1111/j.1469-8137.2012.04128.x⟩
Journal articles hal-02649642v1
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RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter

Benjamin Petre , Emmanuelle Morin , Emilie Tisserant , Stéphane Hacquard , Corinne da Silva
PLoS ONE, 2012, 7 (8), pp.1-12. ⟨10.1371/journal.pone.0044408⟩
Journal articles hal-01267887v1
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A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust).

Stéphane Hacquard , David L. Joly , Yao-Cheng Lin , Emilie Tisserant , Nicolas Feau
Molecular Plant-Microbe Interactions, 2012, 25 (3), pp.279-293. ⟨10.1094/MPMI-09-11-0238⟩
Journal articles hal-01267890v1

454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction.

Diana Fernandez , Emilie Tisserant , Pedro Talhinhas , Helena Azinheira , Ana Vieira
Molecular Plant Pathology, 2012, 13 (1), pp.17-37. ⟨10.1111/j.1364-3703.2011.00723.x⟩
Journal articles hal-01267893v1
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Mitogen-activated protein kinase signaling in plant-interacting fungi: distinct messages from conserved messengers

Louis-Phillipe Hamel , Marie-Claude Nicole , Sébastien Duplessis , Brian Ellis
The Plant cell, 2012, 24 (4), pp.1327-1351. ⟨10.1105/tpc.112.096156⟩
Journal articles hal-01267888v1

Expression profiling of genes involved in the biotrophic colonisation of [i]Coffea arabica[/i] leaves by [i]Hemileia vastatrix[/i]

Ana Vieira , Pedro Talhinhas , Andreia Loureiro , Johannes Thürich , Sébastien Duplessis
European Journal of Plant Pathology, 2012, 133 (1), pp.266-277. ⟨10.1007/s10658-011-9864-5⟩
Journal articles hal-01267894v1
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Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar

Benjamin Petre , Ian Major , Nicolas Rouhier , Sébastien Duplessis
BMC Plant Biology, 2011, 11 (1), pp.33. ⟨10.1186/1471-2229-11-33⟩
Journal articles hal-02548481v1
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Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves

Stéphane S. Hacquard , Claire Veneault-Fourrey , Christine Delaruelle , Pascal Frey , Francis Martin
Physiological and Molecular Plant Pathology, 2011, 75 (3), pp.106-112. ⟨10.1016/j.pmpp.2010.10.003⟩
Journal articles hal-02644005v1
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The poplar-poplar rust interaction: insights from genomics and transcriptomics

Stéphane S. Hacquard , Benjamin Petre , Pascal Frey , Arnaud Hecker , Nicolas Rouhier
Journal of Pathogens, 2011, EPUB 2011
Journal articles hal-02642064v1

Melampsora larici-populina transcript profiling during germination and timecourse infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy.

Sébastien Duplessis , Stéphane S. Hacquard , Christine Delaruelle , Emilie Tisserant , Pascal Frey
Molecular Plant-Microbe Interactions, 2011, 24 (7), pp.808-818. ⟨10.1094/MPMI-01-11-0006⟩
Journal articles hal-02650884v1
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Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Sébastien Duplessis , Christina A C. A. Cuomo , Yao-Cheng Y.-C. Lin , Andrea Aerts , Emilie Tisserant
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (22), pp.9166-9171. ⟨10.1073/pnas.1019315108⟩
Journal articles hal-01000169v1

Isolation of differentially expressed genes during interactions between tomato cells and a protective or a non-protective strain of Fusarium oxysporum

Floriane L'Haridon , Sébastien Aimé , Sébastien Duplessis , Claude C. Alabouvette , Christian Steinberg
Physiological and Molecular Plant Pathology, 2011, 76 (1), pp.9-19. ⟨10.1016/j.pmpp.2011.07.001⟩
Journal articles hal-02644850v1

Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust.

Ana Vieira , Pedro Talhinhas , Andreia Loureiro , Sébastien Duplessis , Diana Fernandez
Fungal Biology, 2011, 115 (9), pp.891-901. ⟨10.1016/j.funbio.2011.07.002⟩
Journal articles hal-02646996v1

Mining gene expression data with pattern structures in formal concept analysis

Mehdi Kaytoue , Sergei O. Kuznetsov , Amedeo Napoli , Sébastien Duplessis
Information Sciences, 2011, 181 (10), pp.1989-2001
Journal articles hal-02651138v1
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Mining gene expression data with pattern structures in formal concept analysis

Mehdi Kaytoue , Sergei O. Kuznetsov , Amedeo Napoli , Sébastien Duplessis
Information Sciences, 2011, 181 (10), pp.1989-2001. ⟨10.1016/j.ins.2010.07.007⟩
Journal articles hal-00541100v1

Laser capture microdissection of uredinia formed by Melampsora larici-populina revealed a transcriptional switch between biotrophy and sporulation

Stéphane S. Hacquard , Christine Delaruelle , Valérie Legué , Emilie Tisserant , Annegret Kohler
Molecular Plant-Microbe Interactions, 2010, 23 (10), pp.1275-1286. ⟨10.1094/MPMI-05-10-0111⟩
Journal articles hal-02667759v1

Photosynthetic and respiratory changes in leaves of poplar elicited by rust infection

Ian T. Major , Marie-Claude Nicole , Sébastien Duplessis , Armand Séguin
Photosynthesis Research, 2010, 104 (1), pp.41-48. ⟨10.1007/s11120-009-9507-2⟩
Journal articles hal-02663764v1
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Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

Francis Martin , Annegret Kohler , Claude Murat , Raffaella Balestrini , Pedro M Coutinho
Nature, 2010, 464 (7291), pp.1033-1038. ⟨10.1038/nature08867⟩
Journal articles cea-00907731v1

RNA silencing in the model mycorrhizal fungus Laccaria bicolor: gene knock-down of nitrate reductase results in inhibition of symbiosis with Populus

Minna Kemppainen , Sébastien Duplessis , Francis Martin , Alejandro G. Pardo
Environmental Microbiology, 2009, 11 (7), pp.1878-1896. ⟨10.1111/j.1462-2920.2009.01912.x⟩
Journal articles hal-02658986v1

La génomique fongique

Thierry T. Rouxel , Sébastien Duplessis , Muriel Viaud , Joelle J. Amselem , Marc-Henri M.-H. Lebrun
Biofutur, 2009, 296 (Février), pp.31-35
Journal articles hal-02654166v1

La génomique des champignons pathogènes des plantes en France

Thierry T. Rouxel , Sébastien Duplessis , Muriel Viaud , Joelle J. Amselem , Marc-Henri M.-H. Lebrun
Biofutur, 2009, Fev. (296), pp.35
Journal articles hal-02654230v1

Gene expression analysis of Populus deltoides roots subjected to copper stress

Fernando Guerra , Sébastien Duplessis , Annegret Kohler , Francis Martin , Jaime Tapia
Environmental and Experimental Botany, 2009, 67 (2), pp.335-344. ⟨10.1016/j.envexpbot.2009.08.004⟩
Journal articles hal-02655593v1

Poplar and pathogen interactions

Sébastien Duplessis , Ian Major , Francis Martin , Armand Séguin
Critical Reviews in Plant Sciences, 2009, 28 (5), pp.309-334. ⟨10.1080/07352680903241063⟩
Journal articles hal-02665788v1

Genome-wide identification of NBS resistance genes in Populus trichocarpa

Annegret Kohler , Cécile Rinaldi , Sébastien Duplessis , Marie Baucher , Danny Geelen
Plant Molecular Biology, 2008, 66 (6), pp.619-636. ⟨10.1007/s11103-008-9293-9⟩
Journal articles hal-02669184v1

T-DNA insertion, plasmid rescue and integration analysis in the model mycorrhizal fungus Laccaria bicolor

Minna Kemppainen , Sébastien Duplessis , Francis Martin , Alejandro G. Pardo
Microbial Biotechnology, 2008, 1 (3), pp.258-269. ⟨10.1111/j.1751-7915.2008.00029.x⟩
Journal articles hal-02665900v1

Secretomic climax in plant–fungal interactions

Sébastien Duplessis , H. Kuhn
New Phytologist, 2008, 179 (4), pp.907-910. ⟨10.1111/j.1469-8137.2008.02594.x⟩
Journal articles hal-02660039v1
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The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

F. Martin , A. Aerts , D. Ahrén , A. Brun , E. G. J. Danchin
Nature, 2008, 452 (7183), pp.88-93. ⟨10.1038/nature06556⟩
Journal articles halsde-00261893v1

Transcript Profiling of Poplar Leaves upon Infection with Compatible and Incompatible Strains of the Foliar Rust Melampsora larici-populina

Cecile Rinaldi , Annegret Kohler , Pascal Frey , Frédéric Duchaussoy , Francois Ningre
Plant Physiology, 2007, 144 (1), pp.347-366. ⟨10.1104/pp.106.094987⟩
Journal articles hal-01194961v1

Living in harmony in the wood underground: ectomycorrhizal genomics

Francis Martin , Annegret Kohler , Sébastien Duplessis
Current Opinion in Plant Biology, 2007, 10 (2), pp.204-210. ⟨10.1016/j.pbi.2007.01.006⟩
Journal articles hal-02660158v1

More complexity in the mycorrhizal word

Marc-André Selosse , Sébastien Duplessis
New Phytologist, 2006, 172 (4), pp.600-604. ⟨10.1111/j.1469-8137.2006.01929.x⟩
Journal articles hal-02653524v1

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)

Gerald A. Tuskan , Stephen Difazio , Stefan Jansson , Jörg Bohlmann , Igor Grigoriev
Science, 2006, 313 (5793), pp.1596-1604. ⟨10.1126/science.1128691⟩
Journal articles hal-02669155v1
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T-DNA transfer from Agrobacterium tumefaciens to the ectomycorrhizal fungus Pisolithus microcarpus

A.G. Pardo , Minna Kemppainen , D. Valdemoros , Sébastien Duplessis , Francis Martin
Revista Argentina de Microbiología, 2005, 37, pp.69-72
Journal articles hal-02681826v1

Transcript profiling reveals novel marker genes involved in fruiting body formation in Tuber borchii

S. Gabella , S. Abbà , Sébastien Duplessis , Barbara Montanini , F. Martin
Eukaryotic Cell, 2005, 4 (9), pp.1599-1602
Journal articles hal-02671240v1

Gene expression patterns of trembling aspen trees following long-term exposure to interacting elevated CO2 and tropospheric O3

P. Gupta , Sébastien Duplessis , H. White , F. Martin , G.K. Podila
New Phytologist, 2005, 167, pp.129-142
Journal articles hal-02678558v1

Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus

Sébastien Duplessis , Pierre-Emmanuel Courty , Denis Tagu , F. Martin
New Phytologist, 2005, 165, pp.599-611
Journal articles hal-02680580v1
Image document

Poplar peroxiredoxin Q. A thioredoxin-linked chloroplast antioxidant functional in pathogen defense

Nicolas Rouhier , Éric Gelhaye , J.M. Gualberto , M.N. Jordy , E. de Fay
Plant Physiology, 2004, 134 (3), pp.1027-1036
Journal articles hal-02680157v1

Analysis of expressed sequence tags from the ectomycorhizal basidiomycetes Laccaria bicolor and Pisolithus microcarpus

Magali Peter , Pierre-Emmanuel Courty , Annegret Kohler , Christine Delaruelle , D. Martin
New Phytologist, 2003, 159 (1), pp.117-129
Journal articles hal-02680906v1

Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs

C. Voiblet , Sébastien Duplessis , N. Encelot , F. Martin
Plant Journal, 2001, 25 (3), pp.1-12
Journal articles hal-02673611v1

Cloning and expression analysis of a new hydrophobin cDNA from the ectomycorrhizal basidiomycete Pisolithus

Sébastien Duplessis , Céline Sorin , Catherine Voiblet , Béatrice Palin , Francis Martin
Current Genetics, 2001, ⟨10.1007/s002940100224⟩
Journal articles hal-02915287v1

Revisiting life cycle and biology of rust fungi (Pucciniales) in the genomics era

Sébastien Duplessis
International Plant Immunity Symposium (IPIS) 2021, Goettingen University (IRTG 2172: PRoTECT: Plant Responses To Eliminate Critical Threats), Aug 2021, Goettingen, Germany
Conference papers hal-03328724v1

Association of two co-occurring mutations at the AvrMlp7 avirulence locus in poplar rust during the breakdown of RMlp7 resistance gene

Louet C , Méline Saubin , Axelle Andrieux , A. Persoons , Gorce M
Molecular Mechanism & Structure— Zooming in on Plant Immunity, Jul 2021, e-symposia, Germany
Conference papers hal-03588311v1

From population genomics to molecular approaches to identify and analyse the first avirulence gene in the poplar rust fungus Melampsora larici-populina

Clémentine Louet , Méline Saubin , Antoine Persoons , Axelle Andrieux , Bénédicte Fabre
Réunion 2020 du groupe "champignons phytopathogènes", Nov 2020, aucune (visio), France
Conference papers hal-03336539v1

Genomics of Pucciniales

Sébastien Duplessis
30th Fungal Genetics Conference, GEnetics Society of America, Mar 2019, Asilomar, Pacific Grove, California, United States
Conference papers hal-03251311v1

Deciphering complex plant-microbe interactions with genomics: from the case study of the poplar-poplar rust interaction toward rust pangenomics

Sébastien Duplessis
Université RWTH-Aachen, May 2019, Aachen, Germany
Conference papers hal-03255976v1

Phylogenetics and comparative transcriptomics of Gymnosporangium species

Sébastien Duplessis , Si-Qi Tao , Emmanuelle Morin , Tian Cheng-Ming , Liang Ying-Mei
Rust workshop of the 30th Fungal Genetics Conference, Genetics Society of America, Mar 2019, Asilomar, Pacific Grove, Californie, United States
Conference papers hal-03251310v1

Recent progress on genomics and effectoromics of poplar rust fungi

Sébastien Duplessis
30th Fungal Genetics Conference, Genetics Society of America, Mar 2019, Asilomar, Pacific Grove, California, United States
Conference papers hal-03251312v1

The poplar-poplar rust interaction: an emerging model system in tree pathology

Sébastien Duplessis
11th National Poplar Symposium, Chinese Academy of Forestry, Sep 2019, Xiongan, Hebei province, China
Conference papers hal-03251313v1
Image document

An integrated information system dedicated to oak genomics and genetics

Joëlle Amselem , Nicolas Francillonne , Célia Michotey , Thomas Letellier , Jean-Marc Aury
PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides
Conference papers hal-01839185v1

Table ronde sur les aspects "utilisateurs" : intérêts et retours d’expériences de chercheurs et enseignants-chercheurs du site

Xavier Manival , Lucas Nussbaum , Sébastien Duplessis , Emmanuelle Montargès-Pelletier , Pierre Humbert
Colloque Sciences ouvertes : expériences, enjeux et perspectives, Université de Lorraine; Ministère de l'Enseignement supérieur, de la Recherche et de l'Innovation, Oct 2018, Vandœuvre-lès-Nancy, France
Conference papers hal-01885979v1

Le séquençage du génome du chêne

Sébastien Duplessis
Journée à thème Recherche agronomique et forestière de l'association Emerites.Lorraine, Centre INRA Grand Est Nancy, Association Emerites.Lorraine, Jun 2017, Champenoux, France
Conference papers hal-03251309v1

Demographic and genomic consequences of a major selective event in the poplar rust

Fabien Halkett , Antoine Persoons , Agathe Maupetit , Sébastien Duplessis , Pascal Frey
International Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Ascona, Switzerland
Conference papers hal-02790211v1

Genome-wide QTL mapping of aggressiveness traits in the poplar rust fungus

Michaël Pernaci , Agathe Maupetit , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis
International Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Monte Verità Conference Center, Ascona, Switzerland
Conference papers hal-02785090v1

Deciphering host specificity in poplar rust fungi through life-cycle transcriptomics and comparative genomics.

Sébastien Duplessis
Rust workshop of the 29th Fungal Genetics Conference, Genetics Society of America, Mar 2017, Asilomar, Pacific Grove, Californie, United States
Conference papers hal-03251308v1

Update on Melampsora larici-populina genomics.

Sébastien Duplessis
MPI TerMic - ARBRE Interdepartmental workshop on plant-fungus interactions, MPI Terrestrial Microbiology, Marburg, Oct 2016, Marburg, Germany
Conference papers hal-03251305v1

Genomics research on non-model plant pathogens: delivering novel insights into rust fungus biology

Sébastien Duplessis
49° Congresso Brasileiro de Fitopatologia, Aug 2016, Maceio, Brazil
Conference papers hal-03251304v1

Deciphering host specificity in poplar rust fungi through life-cycle transcriptomics and comparative genomics

Sébastien Duplessis
International Society for Molecular Plant Microbe Interactions XVII congress, International Society for Molecular Plant Microbe Interactions, Jul 2016, Portland, Oregon, United States
Conference papers hal-03251306v1

Annotation of the oak genome sequence and associated bioinformatic resources

Joelle J. Amselem , Jean Marc Aury , Nicolas Francillonne , Tina Alaeitabar , Corinne da Silva
IUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Conference papers hal-02741128v1

Update on Melampsora larici-populina genomics

Sébastien Duplessis , Stéphane de Mita , Fabien Halkett , Pascal Frey
11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France
Conference papers hal-02741208v1

Analyse moléculaire d'une interaction arbre-champignon pathogène: la rouille foliaire du peuplier à l'ère de la génomique.

Sébastien Duplessis
Congrès annuel de l'UPBM (Union des Professeurs de Physiologie Biochimie Microbiologie, professeurs des sections biotechnologiques., UPBM, Oct 2016, Nancy, France
Conference papers hal-03251307v1

Identification of candidate effectors in the poplar rust fungus Melampsora larici-populina through a population genomics approach

Antoine Persoons , Fabien Halkett , Stéphane de Mita , Sébastien Duplessis
28. Fungal Genetics Conference, Mar 2015, Asilomar, Pacific Grove, CA, United States
Conference papers hal-02792660v1

Mapping QTL of aggressiveness traits in the poplar rust fungus

Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis , Fabien Halkett
5. International Conference on Genetics of Tree-Parasite Interactions : Novel challenges and opportunities for resistance to pests and pathogens, Aug 2015, Orléans, France
Conference papers hal-02793206v1

On the road to mapping QTLs of morphological and aggressiveness traits in the poplar rust fungus

Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis , Fabien Halkett
Réunion annuelle 2015 du Réseau Ecologie des Interactions Durables, Mar 2015, Lyon, France
Conference papers hal-02792666v1

Mapping QTL of aggressiveness traits in the poplar rust fungus

Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis , Fabien Halkett
9eme Colloque de la Société Française de Phytopathologie, Jun 2015, Colmar, France
Conference papers hal-02792933v1

Genomics, transcriptomics and effectoromics of the poplar leaf rust fungus Melampsora larici-populina

Benjamin Petre , Stéphane S. Hacquard , Antoine Persoons , Emilie Tisserant , Emmanuelle Morin
IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States
Conference papers hal-02801804v1

Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

Antoine Persoons , Emmanuelle Morin , Christine Delaruelle , Thibaut Payen , Fabien Halkett
Max-Planck-ARBRE inter-departmental workshop on plant-fungus interactions, Nov 2014, Nancy, France
Conference papers hal-02794927v1
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Identification d’effecteurs de Melampsora larici-populina par une approche originale : de la génomique des populations à la génomique fonctionnelle

Antoine Persoons , Stéphane de Mita , Fabien Halkett , Sébastien Duplessis
10. Rencontres de Phytopathologie - Mycologie - JJC 2014 Journée Jean Chevaugeon, Jan 2014, Aussois, France. 116 p
Conference papers hal-02742734v1
Image document

Genome-wide signature of adaptation in a recently introduced pathogen

N. Feau , Pascal Frey , Sébastien Duplessis , R. C. Hamelin
APS-MSA Joint Meeting, Aug 2013, Austin, Texas, United States
Conference papers hal-01268359v1

Development of genomic resources to study the structure, function and evolution of the oak genome

Christophe Plomion , Joelle J. Amselem , Jean-Marc Aury , Catherine Bodenes , Emilie Chancerel
IUFRO working group "Genetics of Quercus and Nothofagus", Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Conference papers hal-01019850v1
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Phylogenetic analysis of Hemileia vastatrix and related taxa using a genome-scale approach

Diogo N. Silva , Ana Vieira , Pedro Talhinhas , Helena Gil Azinheira , Maria Do Ceu Silva
24. International Conference on Coffee Science. ASIC 2012, Nov 2012, San Jose, Costa Rica
Conference papers hal-01267895v1

Fungal genome analysis of transposable elements: expansion vs RIP silencing

Joelle J. Amselem , Timothée T. Flutre , Victoria Fabia Dominguez del Angel , Jonathan J. Kreplak , Sébastien Duplessis
Plant and Animal Genome: 19. Conference, Jan 2011, San Diego, United States. n.p
Conference papers hal-00956370v1
Image document

Breeding poplars with durable resistance to Melampsora larici-populina leaf rust : a multidisciplinary approach to understand and delay pathogen adaptation

Arnaud A. Dowkiw , Catherine Bastien , Véronique V. Jorge , Marc M. Villar , Elodie Voisin
4. International Workshop on the Genetics of Host-Parasite Interactions in Forestry : "Disease and Insect Resistance in Forest Trees", United States Department of Agriculture - USDA (USA) (USDA). Forest service, Ville service, USA., Jul 2011, Eugene, Oregon, United States. 112 p
Conference papers hal-02748005v1

Les apports de la génomique pour l’étude des familles multigéniques : exemple des thaumatin-like proteins (TLPs) chez le peuplier

Benjamin Petre , Ian Major , Pascal Frey , Francis Martin , Nicolas Rouhier
Séminaire de l’Ecole Doctorale RP2E. Biodiversité, Ingénierie écologique, Jan 2011, Vandoeuvre-lès-Nancy, France. 8 p
Conference papers hal-02746248v1
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No resistance is sacrosanct: unveiling the genes controlling quantitative resistance to Melampsora larici-populina in interspecific hybrid poplars and quantifying potential adaptation of the pathogen

Arnaud A. Dowkiw , Véronique V. Jorge , Elodie Voisin , Patricia P. Faivre-Rampant , Alois Bresson
4. International Rusts of Forest Trees Conference. IUFRO Working Party 02.07.05, May 2010, Florence, Italy
Conference papers hal-02754692v1
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Towards broad-spectrum resistance to Melampsora larici-populina rust in poplar: new genetic constructions and potential adaptation of the pathogen

Catherine Bastien , Arnaud A. Dowkiw , Véronique V. Jorge , Elodie Voisin , Vanina Guérin
5. International Poplar Symposium;IPS V, Sep 2010, Orvieto, Italy
Conference papers hal-02753480v1

Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix

Pedro Talhinhas , Helena Gil Azinheira , Andreia Loureiro , Dora Batista , B Vieira
23. International Conference on Coffee Science - ASIC 2010, Oct 2010, Bali, Indonesia
Conference papers hal-02745180v1

Hemileia vastatrix gene expression during the infection process of coffee leaves

Ana Vieira , Pedro Talhinhas , Andreia Loureiro , Sébastien Duplessis , Diana Fernandez
23. International Conference on Coffee Science - ASIC 2010, Oct 2010, Bali, Indonesia
Conference papers hal-02745179v1

L’analyse formelle de concepts pour l’extraction de connaissances dans les données d’expression de gènes

Sébastien Duplessis , Mehdi Kaytoue , Amedeo Napoli
Extraction et gestion des connaissances (EGC’2009), Jan 2009, Strasbourg, France. pp.439-440
Conference papers hal-02756939v1

L'analyse formelle de concepts pour l'extraction de connaissances dans les données d'expression de gènes

Mehdi Kaytoue , Sébastien Duplessis , Amedeo Napoli
Extraction et gestion des connaissances, Jan 2009, Strasbourg, France. pp.439-440
Conference papers inria-00600217v1

Chasing effectors in the secretome of Melampsora larici-populina

David L Joly , Stéphane S. Hacquard , Nicolas Feau , Philippe Tanguay , Francis Martin
14. International Congress on Molecular Plant-Microbe Interactions, Jul 2009, Québec, Canada
Conference papers hal-02752437v1

Joint transcriptomic and proteomic approaches to precise the molecular basis of a major QTL (RUS) controlling quantitative rust resistance in poplar

Véronique V. Jorge , Sébastien Duplessis , Céline C. Lalanne , Alois Bresson , Arnaud A. Dowkiw
Plant genomics and beyond, Jul 2009, Evry, France
Conference papers hal-02756173v1

Two FCA-Based Methods for Mining Gene Expression Data

Mehdi Kaytoue , Sébastien Duplessis , Sergei O. Kuznetsov , Amedeo Napoli
Formal Concept Analysis, 7th International Conference, ICFCA 2009, Apr 2009, Darmstadt, Germany. pp.251-266, ⟨10.1007/978-3-642-01815-2_19⟩
Conference papers inria-00600200v1

Toward the discovery of itemsets with significant variations in gene expression matrices

Mehdi Kaytoue , Sébastien Duplessis , Amedeo Napoli
First joint meeting of the Société Francophone de Classification and the Classification and Data Analysis Group of the Italian Statistical Society - SFC - CLADAG 2008, Jun 2008, Caserta, Italy
Conference papers inria-00600224v1

Using Formal Concept Analysis for the Extraction of Groups of Co-expressed Genes

Mehdi Kaytoue-Uberall , Sébastien Duplessis , Amedeo Napoli
4.International Conference on Intelligent Computing, Sep 2008, Shanghai, China
Conference papers hal-02757987v1

Using Formal Concept Analysis for the Extraction of Groups of Co-expressed Genes

Mehdi Kaytoue , Sébastien Duplessis , Amedeo Napoli
Modelling, Computation and Optimization in Information Systems and Management Sciences, Sep 2008, Metz, France. pp.439-449, ⟨10.1007/978-3-540-87477-5_47⟩
Conference papers inria-00600212v1

Molecular characterisation of a major QTL for rust resistance in poplar using a proteomic approach

Céline C. Lalanne , Catherine Bastien , Pascal Frey , Arnaud A. Dowkiw , Véronique V. Jorge
IUFRO - Tree Biotechnology, Jun 2007, Ponta Delgada, Azores, Portugal
Conference papers hal-02754112v1
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Effet du stress osmotique sur la croissance racinaire du peuplier : approche par génomique fonctionnelle à l'échelle de la zone de croissance

Marie-Béatrice Bogeat-Triboulot , Aude Hummel , Sébastien Duplessis , Annegret Kohler
IFR 110, Nov 2006, Nancy, France. 17 p
Conference papers hal-02812516v1

The wood underground: a glimpse of the interactions between trees and ectomycorrhizal fungi

Francis Martin , Annegret Kohler , Anne Jambois , Sébastien Duplessis , Frédéric Lapeyrie
12. New Phytologist Symposium. Functional genomics of environmental adaptation in Populus, Oct 2004, Gatlinburg, United States. 1 p
Conference papers hal-02829957v1

Characterization of the early response of poplar to rust infection using expression profiling

Sébastien Duplessis , Annegret Kohler , Cécile Rinaldi , Pascal Frey , Francis Martin
12. New Phytologist Symposium. Functional genomics of environmental adaptation in Populus, Oct 2004, Gatlinburg, United States. 1 p
Conference papers hal-02830800v1

Phylogenetics and comparative transcriptomics of Gymnosporangium species.

Si-Qi Tao , Emmanuelle Morin , Tian Cheng-Ming , Liang Ying-Mei , Sébastien Duplessis
30th Fungal Genetics Conference, Mar 2019, Asilomar, Pacific Grove, Californie, United States
Conference poster hal-03253596v1

The poplar rust fungus effector biology: challenges of functional characterization of effectors in a non-model system

Cécile Lorrain , Benjamin Petre , Diane G. O. Saunders , Jan Sklenar , Win J
29th Fungal Genetics Conference, Mar 2019, Asilomar, Pacific Grove, Californie, United States
Conference poster hal-03253573v1

Supersize fungi: Rust in the genomics era!

Cécile Lorrain , Mondo Sj , Emmanuelle Morin , Kurt M Labutti , Anna Lipzen
29th Fungal Genetics Conference, Mar 2017, Asilomar, Pacific Grove, Californie, United States
Conference poster hal-03253560v1

Update on Melampsora larici-populina genomics

Sébastien Duplessis , Stéphane de Mita , Fabien Halkett , Pascal Frey
13th European Conference on Fungal Genertics (ECFG13), Apr 2016, Paris, France
Conference poster hal-03253579v1

Genetic architecture of pathogenicity-related life history traits in the poplar rust fungus

Agathe Maupetit , Michaël Pernaci , Bénédicte Fabre , Sébastien Duplessis , Stéphane de Mita
11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France. , 96 p., 2016, 11èmes Journées Jean Chevaugeon. 25–29 janvier 2016. Centre Paul Langevin, Aussois (France)
Conference poster hal-02740999v1

Functional characterization of Melampsora larici-populina candidate effectors

Cécile Lorrain , Benjamin Petre , Diane G. O. Saunders , Jan Sklenar , Win Joe
13th European Conference on Fungal Genertics (ECFG13), Apr 2016, Paris, France
Conference poster hal-03253587v1
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Croissance de la racine de peuplier en réponse au stress osmotique : approche moléculaire dans la zone de croissance

Aude Hummel , Cécile Rinaldi , Annegret Kohler , Sébastien Duplessis , Rémy Merret
10. Rencontre du Groupe de Biologie Moléculaire des Ligneux, May 2008, Nancy, France. 1 p., 2008
Conference poster hal-02818246v1
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INTERPOPGER: Interactions between natural and artificial poplar stands and selection pressures associated with their management in French landscape. Poster.

Véronique V. Jorge , Arnaud A. Dowkiw , Mary Juteau , Vanina Guérin , Patrick Poursat
Population genetics and genomics of forest trees : from gene function to evolutionary dynamics and conservation; A joint conference of IUFRO working groups 2.04.01 (population, ecological and conservation genetics) and 2.04.10 (genomics), and COST Action E-28 (genosilva : european forest genomics network), Oct 2006, Madrid, Spain. 1 p., 2006, Population genetics and genomics of forest trees: from gene function to evolutionary dynamics and conservation. Programme and conference abstract book
Conference poster hal-02755567v1

Advancing knowledge on biology of rust fungi through genomics

Sébastien Duplessis , Guus Bakkeren , Richard Hamelin
Fungi, 70, Academic Press - Elsevier, 488 p., 2014, Advances in Botanical Research, 978-0-12-397940-7. ⟨10.1016/B978-0-12-397940-7.00006-9⟩
Book sections hal-01268872v1

Biotrophic Fungi (Powdery Mildews, Rusts, and Smuts)

Sébastien Duplessis , Pietro D Spanu , Jan Schirawski
The Ecological Genomics of Fungi, John Wiley & Sons, Inc, pp.149-168, 2013, 9781119946106
Book sections hal-01941016v1

Rust effectors

Sébastien Duplessis , David Joly , Peter N. Dodds
Effectors in Plant-Microbe Interactions, Willey-Blackwell, pp.155-193, 2012, 978-0-470-95822-3
Book sections hal-01267889v1

Toward the Discovery of Itemsets with Significant Variations in Gene Expression Matrices

Mehdi Kaytoue , Sébastien Duplessis , Amedeo Napoli
Fichet, Bernard and Piccolo, Domenico and Verde, Rosanna and Vichi, Maurizio. Classification and Multivariate Analysis for Complex Data Structures, Springer Berlin Heidelberg, pp.463--471, 2011, Studies in Classification, Data Analysis, and Knowledge Organization, 978-3-642-13312-1. ⟨10.1007/978-3-642-13312-1_49⟩
Book sections inria-00600233v1

Poplar proteomics: update and future challenges

Christophe Plomion , Delphine D. Vincent , Franck F. Bedon , Johann J. Joets , Ludovic L. Bonhomme
Genetics, Genomics and Breeding of Poplar, CRC Press, 390 p., 2011, Genetics, genomics and breeding of crop plants, 9781578087143
Book sections hal-00964339v1

Exploring the transcriptome of the ectomycorrhizal symbiosis

Francis Martin , Sébastien Duplessis , Annegret Kohler , Denis Tagu
Molecular genetics and breeding of forest trees, Haworth Press, 2004, 1560229586
Book sections hal-02829658v1

Living together underground: a molecular glimpse of the ectomycorrhizal symbiosis

Denis Tagu , Sébastien Duplessis , Francis M. Martin
Heinz D. Osiewacz. Molecular biology of fungal development, Marcel Dekker, 2002, 0-8247-0744-3
Book sections hal-02915362v1
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Exploring genomic determinants of host specialization in Botrytis cinerea

Sebastien Duplessis
Other publications hal-03904631v1
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Comparative genomics in the chestnut blight fungus Cryphonectria parasitica reveals large chromosomal rearrangements and a stable genome organization

Sébastien Duplessis
Other publications hal-03618832v1

Rust fungi in the genomics era: obligate biotrophic fungal pathogens with supersize genomes and effectors galore!

Sébastien Duplessis
2019
Other publications hal-03255977v1

Invited academic presentation: Advancing knowledge on pucciniales biology through genomics

Sébastien Duplessis
2019
Other publications hal-03255978v1

Invited academic presentation - The poplar-poplar rust interaction: a tree pathology model system through the lens of genomics.

Sébastien Duplessis
2018
Other publications hal-03255972v1

Deciphering complex tree-microbe interactions using genomics

Sébastien Duplessis
2018
Other publications hal-03255970v1

Rust genomics & update on the Asian Soybean Rust genome project

Sébastien Duplessis
2018
Other publications hal-03255969v1

The poplar-poplar rust pathosystem: genomics and effectoromics of a model forest pathology system.

Sébastien Duplessis
2018
Other publications hal-03255974v1

An update on Melampsora spp. genomics!

Sébastien Duplessis
2018
Other publications hal-03255975v1

Invited academic presentation - The poplar-poplar rust interaction: an emerging system in forest pathology.

Sébastien Duplessis
2017
Other publications hal-03255967v1

Invited academic presentation : Genomics, transcriptomics and effectoromics of the poplar leaf rust fungus Melampsora larici-populina

Sébastien Duplessis
2017
Other publications hal-03255966v1

La rouille foliaire du peuplier à l'ère de la génomique: manipulation et chasse aux effecteurs

Sébastien Duplessis
2016
Other publications hal-03255940v1

Genomics research on non-model plant pathogens: delivering novel insights into rust fungus biology

Sébastien Duplessis
2016
Other publications hal-03255933v1

Update on Melampsora larici-populina genomics

Sébastien Duplessis
2016
Other publications hal-03255935v1

Génomique fonctionnelle des interactions arbre-champignon biotrophe

Sébastien Duplessis
Sciences du Vivant [q-bio]. Université de Lorraine, 2012
Habilitation à diriger des recherches tel-02809355v1