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Sebastien Duplessis
176
Documents
Researcher identifiers
sebastien-duplessis
- ResearcherId : G-4150-2011
-
0000-0002-2072-2989
- Google Scholar : https://scholar.google.com/citations?user=eUEKPngAAAAJ&hl=en
- IdRef : 144092948
- ResearcherId : http://www.researcherid.com/rid/G-4150-2011
Presentation
**Director of the Tree-Microbe Interactions Department (UMR 1136 IAM)**
Université de Lorraine / INRAE Centre Grand-Est, Nancy - Labex ARBRE
**Bio:** BSc in Biology at Bordeaux University (1995). MSc in Cell Biology and Physiology (1998) and PhD in Plant and Forest Sciences (2001) at Nancy University. Silver medal of the French Academy of Agriculture (2001). Hired research scientist in 2001 at INRA. 1 year sabbatical at Exeter University (2003-2004). HDR diploma from Lorraine University (2012). Region Lorraine Researcher Award (2012). Académie Stanislas Zivi Award (2012). INRA Research Director DR2 (2013). Appointed head of the Ecogenomic of interactions team in 2013, appointed Deputy head of the Tree-Microbe Interactions department in 2019. Appointed head of the INRAE/Lorraine University Tree-Microbe Interactions Department in January 2020.
My early research was on functional genomics of the ectomycorrhizal symbiosis in the group of Francis Martin (INRA Nancy). I spent 1 year in Nick Talbot’s lab at Exeter University to extend my background in molecular phytopathology (2003-2004), and since 2005, my research in the Ecogenomics team has mostly focused on the poplar-poplar rust interaction. I am currently coordinating a transversal scientific project called Mechanism and evolution of the poplar-poplar rust interaction within the Tree-Microbe Interactions department at INRAE Nancy, and co-leading the WP1 of the Labex ARBRE (Integrative Biology) with Nicolas Rouhier.
**Resume:** My research at INRA aims at elucidating how trees respond to pathogens and how biotroph pathogens are able to develop and feed on trees. Our model is the poplar-poplar rust pathosystem. I mainly use genomics and functional approaches to identify and characterize molecular determinants involved in disease resistance and defense response in poplar, and pathogenicity in the rust fungus Melampsora larici-populina as my main model pathosystem. In recent years, I have diversified my research in the frame of international projects using genomics in order to better understand the biology of rust fungi. Progress made in understanding rust fungal biotrophy will help setting new strategies to contain rust diseases.
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Une mutation ponctuelle et une large délétion au locus candidat d’avirulence AvrMlp7 chez la rouille du peuplier sont corrélés avec le contournement de la résistance RMlp7 exprimée par le peuplierJournées Jean Chevaugeon, 13èmes Rencontres de Phytopathologie - Mycologie, Sep 2022, Aussois, France
Conference papers
hal-04137634v1
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Association of two co-occurring mutations at the AvrMlp7 avirulence locus in poplar rust during the breakdown of RMlp7 resistance geneMolecular Mechanism & Structure— Zooming in on Plant Immunity, Jul 2021, e-symposia, Germany
Conference papers
hal-03588311v1
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Revisiting life cycle and biology of rust fungi (Pucciniales) in the genomics eraInternational Plant Immunity Symposium (IPIS) 2021, Goettingen University (IRTG 2172: PRoTECT: Plant Responses To Eliminate Critical Threats), Aug 2021, Goettingen, Germany
Conference papers
hal-03328724v1
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From population genomics to molecular approaches to identify and analyse the first avirulence gene in the poplar rust fungus Melampsora larici-populinaRéunion 2020 du groupe "champignons phytopathogènes", Nov 2020, aucune (visio), France
Conference papers
hal-03336539v1
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Phylogenetics and comparative transcriptomics of Gymnosporangium speciesRust workshop of the 30th Fungal Genetics Conference, Genetics Society of America, Mar 2019, Asilomar, Pacific Grove, Californie, United States
Conference papers
hal-03251310v1
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The poplar-poplar rust interaction: an emerging model system in tree pathology11th National Poplar Symposium, Chinese Academy of Forestry, Sep 2019, Xiongan, Hebei province, China
Conference papers
hal-03251313v1
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Recent progress on genomics and effectoromics of poplar rust fungi30th Fungal Genetics Conference, Genetics Society of America, Mar 2019, Asilomar, Pacific Grove, California, United States
Conference papers
hal-03251312v1
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Deciphering complex plant-microbe interactions with genomics: from the case study of the poplar-poplar rust interaction toward rust pangenomicsUniversité RWTH-Aachen, May 2019, Aachen, Germany
Conference papers
hal-03255976v1
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Towards evolutionary and functional characterization of an avirulence gene in the poplar rust fungusIUFRO Joint Conference: Genetics of Five-Needle Pines & Rusts of Forest Trees, Jul 2019, Invermere, United States
Conference papers
hal-04137412v1
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Genomics of Pucciniales30th Fungal Genetics Conference, GEnetics Society of America, Mar 2019, Asilomar, Pacific Grove, California, United States
Conference papers
hal-03251311v1
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First avirulence gene in the poplar rust fungus Melampsora larici-populina, from genetic characterization to functional validation12th Effectome Meeting, Oct 2019, Lauret, France
Conference papers
hal-04137237v1
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From mutation to population extinction: The butterfly effect of resistance breakdown in the poplar rust fungus Melampsora larici- populinaXVIII International Congress on Molecular Plant-Microbe Interactions (IS-MPMI), Jul 2019, Glasgow, United Kingdom. pp.S1.1-S1.243
Conference papers
hal-04137226v1
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Table ronde sur les aspects "utilisateurs" : intérêts et retours d’expériences de chercheurs et enseignants-chercheurs du siteColloque Sciences ouvertes : expériences, enjeux et perspectives, Université de Lorraine; Ministère de l'Enseignement supérieur, de la Recherche et de l'Innovation, Oct 2018, Vandœuvre-lès-Nancy, France
Conference papers
hal-01885979v1
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An integrated information system dedicated to oak genomics and geneticsPAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides
Conference papers
hal-01839185v1
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Deciphering host specificity in poplar rust fungi through life-cycle transcriptomics and comparative genomics.Rust workshop of the 29th Fungal Genetics Conference, Genetics Society of America, Mar 2017, Asilomar, Pacific Grove, Californie, United States
Conference papers
hal-03251308v1
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Genome-wide QTL mapping of aggressiveness traits in the poplar rust fungusInternational Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Monte Verità Conference Center, Ascona, Switzerland
Conference papers
hal-02785090v1
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Le séquençage du génome du chêneJournée à thème Recherche agronomique et forestière de l'association Emerites.Lorraine, Centre INRA Grand Est Nancy, Association Emerites.Lorraine, Jun 2017, Champenoux, France
Conference papers
hal-03251309v1
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Demographic and genomic consequences of a major selective event in the poplar rustInternational Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Ascona, Switzerland
Conference papers
hal-02790211v1
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Update on Melampsora larici-populina genomics.MPI TerMic - ARBRE Interdepartmental workshop on plant-fungus interactions, MPI Terrestrial Microbiology, Marburg, Oct 2016, Marburg, Germany
Conference papers
hal-03251305v1
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Analyse moléculaire d'une interaction arbre-champignon pathogène: la rouille foliaire du peuplier à l'ère de la génomique.Congrès annuel de l'UPBM (Union des Professeurs de Physiologie Biochimie Microbiologie, professeurs des sections biotechnologiques., UPBM, Oct 2016, Nancy, France
Conference papers
hal-03251307v1
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Annotation of the oak genome sequence and associated bioinformatic resourcesIUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Conference papers
hal-02741128v1
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Genomics research on non-model plant pathogens: delivering novel insights into rust fungus biology49° Congresso Brasileiro de Fitopatologia, Aug 2016, Maceio, Brazil
Conference papers
hal-03251304v1
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Deciphering host specificity in poplar rust fungi through life-cycle transcriptomics and comparative genomicsInternational Society for Molecular Plant Microbe Interactions XVII congress, International Society for Molecular Plant Microbe Interactions, Jul 2016, Portland, Oregon, United States
Conference papers
hal-03251306v1
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Update on Melampsora larici-populina genomics11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France
Conference papers
hal-02741208v1
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Mapping QTL of aggressiveness traits in the poplar rust fungus9eme Colloque de la Société Française de Phytopathologie, Jun 2015, Colmar, France
Conference papers
hal-02792933v1
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Identification of candidate effectors in the poplar rust fungus Melampsora larici-populina through a population genomics approach28. Fungal Genetics Conference, Mar 2015, Asilomar, Pacific Grove, CA, United States
Conference papers
hal-02792660v1
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Mapping QTL of aggressiveness traits in the poplar rust fungus5. International Conference on Genetics of Tree-Parasite Interactions : Novel challenges and opportunities for resistance to pests and pathogens, Aug 2015, Orléans, France
Conference papers
hal-02793206v1
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On the road to mapping QTLs of morphological and aggressiveness traits in the poplar rust fungusRéunion annuelle 2015 du Réseau Ecologie des Interactions Durables, Mar 2015, Lyon, France
Conference papers
hal-02792666v1
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Identification d’effecteurs de Melampsora larici-populina par une approche originale : de la génomique des populations à la génomique fonctionnelle10. Rencontres de Phytopathologie - Mycologie - JJC 2014 Journée Jean Chevaugeon, Jan 2014, Aussois, France. 116 p
Conference papers
hal-02742734v1
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Genomics, transcriptomics and effectoromics of the poplar leaf rust fungus Melampsora larici-populinaIUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States
Conference papers
hal-02801804v1
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Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factorsMax-Planck-ARBRE inter-departmental workshop on plant-fungus interactions, Nov 2014, Nancy, France
Conference papers
hal-02794927v1
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Genome-wide signature of adaptation in a recently introduced pathogenAPS-MSA Joint Meeting, Aug 2013, Austin, Texas, United States
Conference papers
hal-01268359v1
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Phylogenetic analysis of Hemileia vastatrix and related taxa using a genome-scale approach24. International Conference on Coffee Science. ASIC 2012, Nov 2012, San Jose, Costa Rica
Conference papers
hal-01267895v1
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Development of genomic resources to study the structure, function and evolution of the oak genomeIUFRO working group "Genetics of Quercus and Nothofagus", Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Conference papers
hal-01019850v1
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Les apports de la génomique pour l’étude des familles multigéniques : exemple des thaumatin-like proteins (TLPs) chez le peuplierSéminaire de l’Ecole Doctorale RP2E. Biodiversité, Ingénierie écologique, Jan 2011, Vandoeuvre-lès-Nancy, France. 8 p
Conference papers
hal-02746248v1
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Breeding poplars with durable resistance to Melampsora larici-populina leaf rust : a multidisciplinary approach to understand and delay pathogen adaptation4. International Workshop on the Genetics of Host-Parasite Interactions in Forestry : "Disease and Insect Resistance in Forest Trees", United States Department of Agriculture - USDA (USA) (USDA). Forest service, Ville service, USA., Jul 2011, Eugene, Oregon, United States. 112 p
Conference papers
hal-02748005v1
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Fungal genome analysis of transposable elements: expansion vs RIP silencingPlant and Animal Genome: 19. Conference, Jan 2011, San Diego, United States. n.p
Conference papers
hal-00956370v1
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Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix23. International Conference on Coffee Science - ASIC 2010, Oct 2010, Bali, Indonesia
Conference papers
hal-02745180v1
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No resistance is sacrosanct: unveiling the genes controlling quantitative resistance to Melampsora larici-populina in interspecific hybrid poplars and quantifying potential adaptation of the pathogen4. International Rusts of Forest Trees Conference. IUFRO Working Party 02.07.05, May 2010, Florence, Italy
Conference papers
hal-02754692v1
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Towards broad-spectrum resistance to Melampsora larici-populina rust in poplar: new genetic constructions and potential adaptation of the pathogen5. International Poplar Symposium;IPS V, Sep 2010, Orvieto, Italy
Conference papers
hal-02753480v1
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Hemileia vastatrix gene expression during the infection process of coffee leaves23. International Conference on Coffee Science - ASIC 2010, Oct 2010, Bali, Indonesia
Conference papers
hal-02745179v1
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Two FCA-Based Methods for Mining Gene Expression DataFormal Concept Analysis, 7th International Conference, ICFCA 2009, Apr 2009, Darmstadt, Germany. pp.251-266, ⟨10.1007/978-3-642-01815-2_19⟩
Conference papers
inria-00600200v1
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Joint transcriptomic and proteomic approaches to precise the molecular basis of a major QTL (RUS) controlling quantitative rust resistance in poplarPlant genomics and beyond, Jul 2009, Evry, France
Conference papers
hal-02756173v1
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Chasing effectors in the secretome of Melampsora larici-populina14. International Congress on Molecular Plant-Microbe Interactions, Jul 2009, Québec, Canada
Conference papers
hal-02752437v1
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L’analyse formelle de concepts pour l’extraction de connaissances dans les données d’expression de gènesExtraction et gestion des connaissances (EGC’2009), Jan 2009, Strasbourg, France. pp.439-440
Conference papers
hal-02756939v1
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L'analyse formelle de concepts pour l'extraction de connaissances dans les données d'expression de gènesExtraction et gestion des connaissances, Jan 2009, Strasbourg, France. pp.439-440
Conference papers
inria-00600217v1
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Using Formal Concept Analysis for the Extraction of Groups of Co-expressed Genes4.International Conference on Intelligent Computing, Sep 2008, Shanghai, China
Conference papers
hal-02757987v1
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Toward the discovery of itemsets with significant variations in gene expression matricesFirst joint meeting of the Société Francophone de Classification and the Classification and Data Analysis Group of the Italian Statistical Society - SFC - CLADAG 2008, Jun 2008, Caserta, Italy
Conference papers
inria-00600224v1
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Using Formal Concept Analysis for the Extraction of Groups of Co-expressed GenesModelling, Computation and Optimization in Information Systems and Management Sciences, Sep 2008, Metz, France. pp.439-449, ⟨10.1007/978-3-540-87477-5_47⟩
Conference papers
inria-00600212v1
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Molecular characterisation of a major QTL for rust resistance in poplar using a proteomic approachIUFRO - Tree Biotechnology, Jun 2007, Ponta Delgada, Azores, Portugal
Conference papers
hal-02754112v1
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Effet du stress osmotique sur la croissance racinaire du peuplier : approche par génomique fonctionnelle à l'échelle de la zone de croissanceIFR 110, Nov 2006, Nancy, France. 17 p
Conference papers
hal-02812516v1
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Characterization of the early response of poplar to rust infection using expression profiling12. New Phytologist Symposium. Functional genomics of environmental adaptation in Populus, Oct 2004, Gatlinburg, United States. 1 p
Conference papers
hal-02830800v1
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The wood underground: a glimpse of the interactions between trees and ectomycorrhizal fungi12. New Phytologist Symposium. Functional genomics of environmental adaptation in Populus, Oct 2004, Gatlinburg, United States. 1 p
Conference papers
hal-02829957v1
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Poplar rust never sleeps: evolutionary characterization of the first avirulence gene in the poplar rust fungus Melampsora larici-populina12th International Congress of Plant Pathology, Aug 2023, Lyon, France. 2023
Conference poster
hal-04230809v1
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Evolutionary and functional studies of the variability of reproductive modes in the poplar rust fungus, Melampsora larici-populinaCJM3-2023 : Le sexe dans tous ses états : sexe, asexe, sexes, Sep 2023, Roscoff, France
Conference poster
hal-04233782v1
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Phylogenetics and comparative transcriptomics of Gymnosporangium species.30th Fungal Genetics Conference, Mar 2019, Asilomar, Pacific Grove, Californie, United States
Conference poster
hal-03253596v1
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The poplar rust fungus effector biology: challenges of functional characterization of effectors in a non-model system29th Fungal Genetics Conference, Mar 2019, Asilomar, Pacific Grove, Californie, United States
Conference poster
hal-03253573v1
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Supersize fungi: Rust in the genomics era!29th Fungal Genetics Conference, Mar 2017, Asilomar, Pacific Grove, Californie, United States
Conference poster
hal-03253560v1
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Genetic architecture of pathogenicity-related life history traits in the poplar rust fungus11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France. , 96 p., 2016, 11èmes Journées Jean Chevaugeon. 25–29 janvier 2016. Centre Paul Langevin, Aussois (France)
Conference poster
hal-02740999v1
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Update on Melampsora larici-populina genomics13th European Conference on Fungal Genertics (ECFG13), Apr 2016, Paris, France
Conference poster
hal-03253579v1
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Functional characterization of Melampsora larici-populina candidate effectors13th European Conference on Fungal Genertics (ECFG13), Apr 2016, Paris, France
Conference poster
hal-03253587v1
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Croissance de la racine de peuplier en réponse au stress osmotique : approche moléculaire dans la zone de croissance10. Rencontre du Groupe de Biologie Moléculaire des Ligneux, May 2008, Nancy, France. 1 p., 2008
Conference poster
hal-02818246v1
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INTERPOPGER: Interactions between natural and artificial poplar stands and selection pressures associated with their management in French landscape. Poster.Population genetics and genomics of forest trees : from gene function to evolutionary dynamics and conservation; A joint conference of IUFRO working groups 2.04.01 (population, ecological and conservation genetics) and 2.04.10 (genomics), and COST Action E-28 (genosilva : european forest genomics network), Oct 2006, Madrid, Spain. 1 p., 2006, Population genetics and genomics of forest trees: from gene function to evolutionary dynamics and conservation. Programme and conference abstract book
Conference poster
hal-02755567v1
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Transposable Elements in Fungi: Coevolution With the Host Genome Shapes, Genome Architecture, Plasticity and AdaptationEncyclopedia of Mycology, Elsevier, pp.142-155, 2021, ⟨10.1016/B978-0-12-819990-9.00042-1⟩
Book sections
hal-03606172v1
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Advancing knowledge on biology of rust fungi through genomicsFungi, 70, Academic Press - Elsevier, 488 p., 2014, Advances in Botanical Research, 978-0-12-397940-7. ⟨10.1016/B978-0-12-397940-7.00006-9⟩
Book sections
hal-01268872v1
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Biotrophic Fungi (Powdery Mildews, Rusts, and Smuts)The Ecological Genomics of Fungi, John Wiley & Sons, Inc, pp.149-168, 2013, 9781119946106
Book sections
hal-01941016v1
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Rust effectorsEffectors in Plant-Microbe Interactions, Willey-Blackwell, pp.155-193, 2012, 978-0-470-95822-3
Book sections
hal-01267889v1
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Poplar proteomics: update and future challengesGenetics, Genomics and Breeding of Poplar, CRC Press, 390 p., 2011, Genetics, genomics and breeding of crop plants, 9781578087143
Book sections
hal-00964339v1
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Toward the Discovery of Itemsets with Significant Variations in Gene Expression MatricesFichet, Bernard and Piccolo, Domenico and Verde, Rosanna and Vichi, Maurizio. Classification and Multivariate Analysis for Complex Data Structures, Springer Berlin Heidelberg, pp.463--471, 2011, Studies in Classification, Data Analysis, and Knowledge Organization, 978-3-642-13312-1. ⟨10.1007/978-3-642-13312-1_49⟩
Book sections
inria-00600233v1
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Exploring the transcriptome of the ectomycorrhizal symbiosisMolecular genetics and breeding of forest trees, Haworth Press, 2004, 1560229586
Book sections
hal-02829658v1
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Living together underground: a molecular glimpse of the ectomycorrhizal symbiosisHeinz D. Osiewacz. Molecular biology of fungal development, Marcel Dekker, 2002, 0-8247-0744-3
Book sections
hal-02915362v1
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A comprehensive collection of transcriptome data to support life cycle analysis of the poplar rust fungus Melampsora larici-populina2022
Preprints, Working Papers, ...
hal-03606152v1
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A decade after the first Pucciniales genomesa snapshot of (post) genomics studies in three model rust fungi2022
Preprints, Working Papers, ...
hal-03719656v1
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2000-2019: twenty years of highly influential publications in plant immunity2021
Preprints, Working Papers, ...
hal-03325099v2
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A survey of highly influential studies on plant pathogen effectors during the last two decades (2000-2020)2021
Preprints, Working Papers, ...
hal-03388325v1
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Caractérisation par ingénierie génomique des profils d'expression génique de Pisolithus tinctorius et d'Eucalyptus globulus au cours du développement de la symbiose ectomycorhizienneBiologie végétale. Université Henri Poincaré - Nancy 1, 2001. Français. ⟨NNT : 2001NAN10019⟩
Theses
tel-01748571v1
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Génomique fonctionnelle des interactions arbre-champignon biotropheSciences du Vivant [q-bio]. Université de Lorraine, 2012
Accreditation to supervise research
tel-02809355v1
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