Sebastien Duplessis
Présentation
Publications
Publications
Une mutation ponctuelle et une large délétion au locus candidat d’avirulence AvrMlp7 chez la rouille du peuplier sont corrélés avec le contournement de la résistance RMlp7 exprimée par le peuplier13. Journées Jean Chevaugeon - Rencontres de Phytopathologie - Mycologie, Sep 2022, Aussois, France |
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Association of two co-occurring mutations at the AvrMlp7 avirulence locus in poplar rust during the breakdown of RMlp7 resistance geneMolecular Mechanism & Structure— Zooming in on Plant Immunity, Jul 2021, Online, Germany |
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Revisiting life cycle and biology of rust fungi (Pucciniales) in the genomics eraInternational Plant Immunity Symposium (IPIS) 2021, Goettingen University (IRTG 2172: PRoTECT: Plant Responses To Eliminate Critical Threats), Aug 2021, Goettingen, Germany |
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From population genomics to molecular approaches to identify and analyse the first avirulence gene in the poplar rust fungus Melampsora larici-populinaRéunion 2020 du groupe "champignons phytopathogènes", Nov 2020, aucune (visio), France |
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The poplar-poplar rust interaction: an emerging model system in tree pathology11th National Poplar Symposium, Chinese Academy of Forestry, Sep 2019, Xiongan, Hebei province, China |
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Recent progress on genomics and effectoromics of poplar rust fungi30th Fungal Genetics Conference, Genetics Society of America, Mar 2019, Asilomar, Pacific Grove, California, United States |
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Phylogenetics and comparative transcriptomics of Gymnosporangium speciesRust workshop of the 30th Fungal Genetics Conference, Genetics Society of America, Mar 2019, Asilomar, Pacific Grove, Californie, United States |
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Towards evolutionary and functional characterization of an avirulence gene in the poplar rust fungusIUFRO Joint Conference: Genetics of Five-Needle Pines & Rusts of Forest Trees, Jul 2019, Invermere, United States |
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Genomics of Pucciniales30th Fungal Genetics Conference, GEnetics Society of America, Mar 2019, Asilomar, Pacific Grove, California, United States |
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Deciphering complex plant-microbe interactions with genomics: from the case study of the poplar-poplar rust interaction toward rust pangenomicsUniversité RWTH-Aachen, May 2019, Aachen, Germany |
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First avirulence gene in the poplar rust fungus Melampsora larici-populina, from genetic characterization to functional validation12th Effectome Meeting, Oct 2019, Lauret, France |
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From mutation to population extinction: The butterfly effect of resistance breakdown in the poplar rust fungus Melampsora larici- populinaXVIII International Congress on Molecular Plant-Microbe Interactions (IS-MPMI), Jul 2019, Glasgow, United Kingdom. pp.S1.1-S1.243 |
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Table ronde sur les aspects "utilisateurs" : intérêts et retours d’expériences de chercheurs et enseignants-chercheurs du siteColloque Sciences ouvertes : expériences, enjeux et perspectives, Université de Lorraine; Ministère de l'Enseignement supérieur, de la Recherche et de l'Innovation, Oct 2018, Vandœuvre-lès-Nancy, France |
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An integrated information system dedicated to oak genomics and geneticsPAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides |
Deciphering host specificity in poplar rust fungi through life-cycle transcriptomics and comparative genomics.Rust workshop of the 29th Fungal Genetics Conference, Genetics Society of America, Mar 2017, Asilomar, Pacific Grove, Californie, United States |
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Demographic and genomic consequences of a major selective event in the poplar rustInternational Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Ascona, Switzerland |
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Genome-wide QTL mapping of aggressiveness traits in the poplar rust fungusInternational Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Monte Verità Conference Center, Ascona, Switzerland |
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Le séquençage du génome du chêneJournée à thème Recherche agronomique et forestière de l'association Emerites.Lorraine, Centre INRA Grand Est Nancy, Association Emerites.Lorraine, Jun 2017, Champenoux, France |
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Update on Melampsora larici-populina genomics11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France |
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Update on Melampsora larici-populina genomics.MPI TerMic - ARBRE Interdepartmental workshop on plant-fungus interactions, MPI Terrestrial Microbiology, Marburg, Oct 2016, Marburg, Germany |
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Analyse moléculaire d'une interaction arbre-champignon pathogène: la rouille foliaire du peuplier à l'ère de la génomique.Congrès annuel de l'UPBM (Union des Professeurs de Physiologie Biochimie Microbiologie, professeurs des sections biotechnologiques., UPBM, Oct 2016, Nancy, France |
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Deciphering host specificity in poplar rust fungi through life-cycle transcriptomics and comparative genomicsInternational Society for Molecular Plant Microbe Interactions XVII congress, International Society for Molecular Plant Microbe Interactions, Jul 2016, Portland, Oregon, United States |
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Genomics research on non-model plant pathogens: delivering novel insights into rust fungus biology49° Congresso Brasileiro de Fitopatologia, Aug 2016, Maceio, Brazil |
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Annotation of the oak genome sequence and associated bioinformatic resourcesIUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p |
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Mapping QTL of aggressiveness traits in the poplar rust fungus9eme Colloque de la Société Française de Phytopathologie, Jun 2015, Colmar, France |
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Identification of candidate effectors in the poplar rust fungus <em>Melampsora larici-populina</em> through a population genomics approach28. Fungal Genetics Conference, Mar 2015, Asilomar, Pacific Grove, CA, United States |
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Mapping QTL of aggressiveness traits in the poplar rust fungus5. International Conference on Genetics of Tree-Parasite Interactions : Novel challenges and opportunities for resistance to pests and pathogens, Aug 2015, Orléans, France |
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On the road to mapping QTLs of morphological and aggressiveness traits in the poplar rust fungusRéunion annuelle 2015 du Réseau Ecologie des Interactions Durables, Mar 2015, Lyon, France |
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Patterns of genomic variation in the poplar rust fungus <em>Melampsora larici-populina</em> identify pathogenesis-related factorsMax-Planck-ARBRE inter-departmental workshop on plant-fungus interactions, Nov 2014, Nancy, France |
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Identification d’effecteurs de <em>Melampsora larici-populina</em> par une approche originale : de la génomique des populations à la génomique fonctionnelle10. Rencontres de Phytopathologie - Mycologie - JJC 2014 Journée Jean Chevaugeon, Jan 2014, Aussois, France. 116 p |
Genomics, transcriptomics and effectoromics of the poplar leaf rust fungus <em>Melampsora larici-populina</em>IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States |
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Genome-wide signature of adaptation in a recently introduced pathogenAPS-MSA Joint Meeting, Aug 2013, Austin, Texas, United States |
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Phylogenetic analysis of Hemileia vastatrix and related taxa using a genome-scale approach24. International Conference on Coffee Science. ASIC 2012, Nov 2012, San Jose, Costa Rica |
Development of genomic resources to study the structure, function and evolution of the oak genomeIUFRO working group "Genetics of Quercus and Nothofagus", Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p |
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Les apports de la génomique pour l’étude des familles multigéniques : exemple des thaumatin-like proteins (TLPs) chez le peuplierSéminaire de l’Ecole Doctorale RP2E. Biodiversité, Ingénierie écologique, Jan 2011, Vandoeuvre-lès-Nancy, France. 8 p |
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Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix23. International Conference on Coffee Science - ASIC 2010, Oct 2010, Bali, Indonesia |
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Fungal genome analysis of transposable elements: expansion vs RIP silencingPlant and Animal Genome: 19. Conference, Jan 2011, San Diego, United States. n.p |
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Breeding poplars with durable resistance to Melampsora larici-populina leaf rust : a multidisciplinary approach to understand and delay pathogen adaptation4. International Workshop on the Genetics of Host-Parasite Interactions in Forestry : "Disease and Insect Resistance in Forest Trees", United States Department of Agriculture - USDA (USA) (USDA). Forest service, Ville service, USA., Jul 2011, Eugene, Oregon, United States. 112 p |
Hemileia vastatrix gene expression during the infection process of coffee leaves23. International Conference on Coffee Science - ASIC 2010, Oct 2010, Bali, Indonesia |
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Chasing effectors in the secretome of Melampsora larici-populina14. International Congress on Molecular Plant-Microbe Interactions, Jul 2009, Québec, Canada |
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Towards broad-spectrum resistance to Melampsora larici-populina rust in poplar: new genetic constructions and potential adaptation of the pathogen5. International Poplar Symposium;IPS V, Sep 2010, Orvieto, Italy |
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No resistance is sacrosanct: unveiling the genes controlling quantitative resistance to Melampsora larici-populina in interspecific hybrid poplars and quantifying potential adaptation of the pathogen4. International Rusts of Forest Trees Conference. IUFRO Working Party 02.07.05, May 2010, Florence, Italy |
Two FCA-Based Methods for Mining Gene Expression DataFormal Concept Analysis, 7th International Conference, ICFCA 2009, Apr 2009, Darmstadt, Germany. pp.251-266, ⟨10.1007/978-3-642-01815-2_19⟩ |
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L'analyse formelle de concepts pour l'extraction de connaissances dans les données d'expression de gènesExtraction et gestion des connaissances, Jan 2009, Strasbourg, France. pp.439-440 |
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Joint transcriptomic and proteomic approaches to precise the molecular basis of a major QTL (RUS) controlling quantitative rust resistance in poplarPlant genomics and beyond, Jul 2009, Evry, France |
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L’analyse formelle de concepts pour l’extraction de connaissances dans les données d’expression de gènesExtraction et gestion des connaissances (EGC’2009), Jan 2009, Strasbourg, France. pp.439-440 |
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Toward the discovery of itemsets with significant variations in gene expression matricesFirst joint meeting of the Société Francophone de Classification and the Classification and Data Analysis Group of the Italian Statistical Society - SFC - CLADAG 2008, Jun 2008, Caserta, Italy |
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Using Formal Concept Analysis for the Extraction of Groups of Co-expressed Genes4.International Conference on Intelligent Computing, Sep 2008, Shanghai, China |
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Using Formal Concept Analysis for the Extraction of Groups of Co-expressed GenesModelling, Computation and Optimization in Information Systems and Management Sciences, Sep 2008, Metz, France. pp.439-449, ⟨10.1007/978-3-540-87477-5_47⟩ |
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Molecular characterisation of a major QTL for rust resistance in poplar using a proteomic approachIUFRO - Tree Biotechnology, Jun 2007, Ponta Delgada, Azores, Portugal |
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Effet du stress osmotique sur la croissance racinaire du peuplier : approche par génomique fonctionnelle à l'échelle de la zone de croissanceIFR 110, Nov 2006, Nancy, France. 17 p |
Characterization of the early response of poplar to rust infection using expression profiling12. New Phytologist Symposium. Functional genomics of environmental adaptation in Populus, Oct 2004, Gatlinburg, United States. 1 p |
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The wood underground: a glimpse of the interactions between trees and ectomycorrhizal fungi12. New Phytologist Symposium. Functional genomics of environmental adaptation in Populus, Oct 2004, Gatlinburg, United States. 1 p |
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Poplar rust never sleeps: evolutionary characterization of the first avirulence gene in the poplar rust fungus Melampsora larici-populina12th International Congress of Plant Pathology, Aug 2023, Lyon, France. 2023 |
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Evolutionary and functional studies of the variability of reproductive modes in the poplar rust fungus, Melampsora larici-populinaCJM3-2023 : Le sexe dans tous ses états : sexe, asexe, sexes, Sep 2023, Roscoff, France |
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Association of two co-occurring mutations at the AvrMlp7 avirulence locus in poplar rust during the breakdown of RMlp7 resistance geneIS-MPMI Congress eSymposium, Pathogen-Host Coevolution — Combating Resistance Breaking in Agriculture, Sep 2021, Online, United States. , Molecular Plant-Microbe Interactions, 34, 2021, 2021 IS-MPMI Congress: eSymposia Series Abstracts |
Phylogenetics and comparative transcriptomics of Gymnosporangium species.30th Fungal Genetics Conference, Mar 2019, Asilomar, Pacific Grove, Californie, United States |
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The poplar rust fungus effector biology: challenges of functional characterization of effectors in a non-model system29th Fungal Genetics Conference, Mar 2019, Asilomar, Pacific Grove, Californie, United States |
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Supersize fungi: Rust in the genomics era!29th Fungal Genetics Conference, Mar 2017, Asilomar, Pacific Grove, Californie, United States |
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Genetic architecture of pathogenicity-related life history traits in the poplar rust fungus11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France. , 96 p., 2016, 11èmes Journées Jean Chevaugeon. 25–29 janvier 2016. Centre Paul Langevin, Aussois (France) |
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Update on Melampsora larici-populina genomics13th European Conference on Fungal Genertics (ECFG13), Apr 2016, Paris, France |
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Functional characterization of Melampsora larici-populina candidate effectors13th European Conference on Fungal Genertics (ECFG13), Apr 2016, Paris, France |
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Croissance de la racine de peuplier en réponse au stress osmotique : approche moléculaire dans la zone de croissance10. Rencontre du Groupe de Biologie Moléculaire des Ligneux, May 2008, Nancy, France. 1 p., 2008 |
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INTERPOPGER: Interactions between natural and artificial poplar stands and selection pressures associated with their management in French landscape. Poster.Population genetics and genomics of forest trees : from gene function to evolutionary dynamics and conservation; A joint conference of IUFRO working groups 2.04.01 (population, ecological and conservation genetics) and 2.04.10 (genomics), and COST Action E-28 (genosilva : european forest genomics network), Oct 2006, Madrid, Spain. 1 p., 2006, Population genetics and genomics of forest trees: from gene function to evolutionary dynamics and conservation. Programme and conference abstract book |
Transposable Elements in Fungi: Coevolution With the Host Genome Shapes, Genome Architecture, Plasticity and AdaptationEncyclopedia of Mycology, Elsevier, pp.142-155, 2021, ⟨10.1016/B978-0-12-819990-9.00042-1⟩ |
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Advancing knowledge on biology of rust fungi through genomicsFungi, 70, Academic Press - Elsevier, 488 p., 2014, Advances in Botanical Research, 978-0-12-397940-7. ⟨10.1016/B978-0-12-397940-7.00006-9⟩ |
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Biotrophic Fungi (Powdery Mildews, Rusts, and Smuts)The Ecological Genomics of Fungi, John Wiley & Sons, Inc, pp.149-168, 2013, 9781119946106 |
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Rust effectorsEffectors in Plant-Microbe Interactions, Willey-Blackwell, pp.155-193, 2012, 978-0-470-95822-3 |
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Poplar proteomics: update and future challengesGenetics, Genomics and Breeding of Poplar, CRC Press, 390 p., 2011, Genetics, genomics and breeding of crop plants, 9781578087143 |
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Toward the Discovery of Itemsets with Significant Variations in Gene Expression MatricesFichet, Bernard and Piccolo, Domenico and Verde, Rosanna and Vichi, Maurizio. Classification and Multivariate Analysis for Complex Data Structures, Springer Berlin Heidelberg, pp.463--471, 2011, Studies in Classification, Data Analysis, and Knowledge Organization, 978-3-642-13312-1. ⟨10.1007/978-3-642-13312-1_49⟩ |
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Exploring the transcriptome of the ectomycorrhizal symbiosisMolecular genetics and breeding of forest trees, Haworth Press, 2004, 1560229586 |
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Living together underground: a molecular glimpse of the ectomycorrhizal symbiosisHeinz D. Osiewacz. Molecular biology of fungal development, Marcel Dekker, 2002, 0-8247-0744-3 |
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A comprehensive collection of transcriptome data to support life cycle analysis of the poplar rust fungus Melampsora larici-populina2022 |
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A decade after the first Pucciniales genomesa snapshot of (post) genomics studies in three model rust fungi2022 |
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2000-2019: twenty years of highly influential publications in plant immunity2021 |
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A survey of highly influential studies on plant pathogen effectors during the last two decades (2000-2020)2021 |
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Caractérisation par ingénierie génomique des profils d'expression génique de Pisolithus tinctorius et d'Eucalyptus globulus au cours du développement de la symbiose ectomycorhizienneBiologie végétale. Université Henri Poincaré - Nancy 1, 2001. Français. ⟨NNT : 2001NAN10019⟩ |
Génomique fonctionnelle des interactions arbre-champignon biotropheSciences du Vivant [q-bio]. Université de Lorraine, 2012 |