Sébastien Hergalant

78 %
Libre accès
73
Documents
Affiliations actuelles
  • Nutrition-Génétique et Exposition aux Risques Environnementaux (NGERE)
  • Institut National de la Santé et de la Recherche Médicale (INSERM)
  • Université de Lorraine (UL)

Compétences

Bioinformatique Cancer Biologie des systèmes Biostatistiques Multi-omiques (Epi)Génétique (Epi)Génomique Cancers cérébraux Lymphomes Maladies métaboliques Obésité Clusters de calcul Ingénierie système Plateforme de bioinformatique

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Publications

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B3GALT6 mutations lead to compromised connective tissue biomechanics in Ehlers-Danlos syndrome

Roméo Milan Diana , Benjamin Jolivet , Jean-Baptiste Vincourt , Sébastien Hergalant , Grégory Francius et al.

JCI Insight, 2025, 10 (16), pp.e179474. ⟨10.1172/jci.insight.179474⟩

Article dans une revue hal-05234907v1

Differential Clinical and Immunological Impacts of Anti–T‐Lymphocyte Globulin ( ATLG ) vs. Anti‐Thymocyte Globulin ( ATG ) in Preventing Graft‐Versus‐Host Disease Post‐Allogeneic Hematopoietic Stem Cell Transplantation: A Comparative Study

Anne-Béatrice Notarantonio , Stéphane Morisset , Romain Piucco , Michaël Pérès , Laura Boulangé et al.

American Journal of Hematology, 2025, 100 (4), pp.626-637. ⟨10.1002/ajh.27619⟩

Article dans une revue hal-04962204v1

adverSCarial: assessing the vulnerability of single-cell RNA-sequencing classifiers to adversarial attacks

Ghislain Fievet , Julien Broséus , David Meyre , Sébastien Hergalant

Bioinformatics, 2025, 41 (4), pp.btaf168. ⟨10.1093/bioinformatics/btaf168⟩

Article dans une revue hal-05036098v1

DNA Methylation Profiling Reveals Multiple Hits in MAPK Pathway in Triple Negative MDS/MPN with SF3B1 Mutation and Thrombocytosis

Marion Divoux , Ghislain Fievet , Natacha Dreumont , Laurence Schenone , Maud d'Aveni et al.

Blood, 2024, 144 (Supplement 1), pp.3174. ⟨10.1182/blood-2024-202925⟩

Article dans une revue hal-05000101v1

Multiomic analysis in fibroblasts of patients with inborn errors of cobalamin metabolism reveals concordance with clinical and metabolic variability

Arnaud Wiedemann , Abderrahim Oussalah , Rosa-Maria Guéant-Rodriguez , Elise Jeannesson , Marc Merten et al.

EBioMedicine, 2024, 99, pp.104911. ⟨10.1016/j.ebiom.2023.104911⟩

Article dans une revue hal-04962224v1

Unraveling Immunogenomic Features Germane to Pathobiology of Myelodysplastic Syndromes

Arda Durmaz , Zachary Brady , Kartik Lakhotiya , Benjamin Kroger , Hussein Awada et al.

Blood, 2024, 144 (Supplement 1), pp.2224. ⟨10.1182/blood-2024-198530⟩

Article dans une revue hal-05000125v1
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Correction: A transgenic mice model of retinopathy of cblG‑type inherited disorder of one‑carbon metabolism highlights epigenome‑wide alterations related to cone photoreceptor cells development and retinal metabolism

Karim Matmat , Jean-Baptiste Conart , Paul-Henri Graindorge , Sandra El Kouche , Ziad Hassan et al.

Clinical Epigenetics, 2024, 16 (1), pp.23. ⟨10.1186/s13148-024-01636-8⟩

Article dans une revue hal-04576854v1
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Highly immunosuppressive myeloid cells correlate with early relapse after allogeneic stem cell transplantation

Anne-Béatrice Notarantonio , Allan Bertrand , Romain Piucco , Ghislain Fievet , Hervé Sartelet et al.

Experimental Hematology & Oncology, 2024, 13 (1), pp.50. ⟨10.1186/s40164-024-00516-4⟩

Article dans une revue hal-04576863v1
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MicroRNAs miR-16 and miR-519 control meningioma cell proliferation via overlapping transcriptomic programs shared with the RNA-binding protein HuR

Sébastien Hergalant , Jean-Matthieu Casse , Abderrahim Oussalah , Rémi Houlgatte , Deborah Helle et al.

Frontiers in Oncology, 2023, 13, pp.1158773. ⟨10.3389/fonc.2023.1158773⟩

Article dans une revue hal-04176105v1

In vivo modeling of CLL transformation to Richter’s syndrome reveals convergent evolutionary paths and therapeutic vulnerabilities

Elisa ten Hacken , Tomasz Sewastianik , Shanye Yin , Gabriela Brunsting Hoffmann , Michaela Gruber et al.

Blood Cancer Discovery, 2023, 4 (2), pp.150-169. ⟨10.1158/2643-3230.BCD-22-0082⟩

Article dans une revue hal-03950340v1
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Molecular landscape of immune pressure and escape in aplastic anemia

Simona Pagliuca , Carmelo Gurnari , Colin Hercus , Sébastien Hergalant , Niroshan Nadarajah et al.

Leukemia, 2023, 37 (1), pp.202-211. ⟨10.1038/s41375-022-01723-w⟩

Article dans une revue hal-03950335v1
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Evolutionary history of transformation from chronic lymphocytic leukemia to Richter syndrome

Erin Parry , Ignaty Leshchiner , Romain Guièze , Connor Johnson , Eugen Tausch et al.

Nature Medicine, 2023, 29 (1), pp.158-169. ⟨10.1038/s41591-022-02113-6⟩

Article dans une revue hal-03950358v1
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Leukemia relapse via genetic immune escape after allogeneic hematopoietic cell transplantation

Simona Pagliuca , Carmelo Gurnari , Colin Hercus , Sébastien Hergalant , Sanghee Hong et al.

Nature Communications, 2023, 14 (1), pp.3153. ⟨10.1038/s41467-023-38113-4⟩

Article dans une revue hal-04162108v1

ZNF683 marks a CD8+ T cell population associated with anti-tumor immunity following anti-PD-1 therapy for Richter syndrome

Erin Parry , Camilla Lemvigh , Stephanie Deng , Nathan Dangle , Neil Ruthen et al.

Cancer Cell, 2023, 41 (10), pp.1803-1816.e8. ⟨10.1016/j.ccell.2023.08.013⟩

Article dans une revue hal-04253414v1
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Molecular characterization of Richter syndrome identifies de novo diffuse large B-cell lymphomas with poor prognosis

Julien Broséus , Sébastien Hergalant , Julia Vogt , Eugen Tausch , Markus Kreuz et al.

Nature Communications, 2023, 14 (1), pp.309. ⟨10.1038/s41467-022-34642-6⟩

Article dans une revue hal-03950368v1
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A high MCM6 proliferative index in atypical meningioma is associated with shorter progression free and overall survivals

Guillaume Gauchotte , Charles Bédel , Emilie Lardenois , Sébastien Hergalant , Laura Cuglietta et al.

Cancers, 2023, 15 (2), pp.535. ⟨10.3390/cancers15020535⟩

Article dans une revue hal-03950329v1

Somatic and Germline HLA Determinants of Immune Surveillance and Escape in Myelodysplastic Syndromes

Carmelo Gurnari , Arda Durmaz , Benjamin Kroger , Hussein Awada , Jacky Chen et al.

Blood, 2023, 142 (Supplement 1), pp.3220. ⟨10.1182/blood-2023-178890⟩

Article dans une revue hal-04320855v1

ZNF683 (Hobit) Marks a CD8+ T Cell Population Associated with Anti-Tumor Immunity Following Anti-PD-1 Therapy for Richter Syndrome

Camilla Lemvigh , Erin Michelle Parry , Stephanie Deng , Nathan Dangle , Neil Ruthen et al.

Blood, 2022, 140 (Supplement 1), pp.1807-1808. ⟨10.1182/blood-2022-162550⟩

Article dans une revue hal-03950370v1
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Epimutations in both the TESK2 and MMACHC promoters in the Epi-cblC inherited disorder of intracellular metabolism of vitamin B12

Abderrahim Oussalah , Youssef Siblini , Sébastien Hergalant , Céline Chéry , Pierre Rouyer et al.

Clinical Epigenetics, 2022, 14 (1), pp.52. ⟨10.1186/s13148-022-01271-1⟩

Article dans une revue hal-03664165v1
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ALDH1L2 Knockout in U251 Glioblastoma Cells Reduces Tumor Sphere Formation by Increasing Oxidative Stress and Suppressing Methionine Dependency

Maëlle Quéré , Jean-Marc Alberto , Franck Broly , Sébastien Hergalant , Christo Christov et al.

Nutrients, 2022, 14 (9), pp.1887. ⟨10.3390/nu14091887⟩

Article dans une revue hal-03664166v1
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Correlation between DNA Methylation and cell proliferation identifies new candidate predictive markers in meningioma

Sébastien Hergalant , Chloé Saurel , Marion Divoux , Fabien Rech , Celso Pouget et al.

Cancers, 2022, 14 (24), pp.6227. ⟨10.3390/cancers14246227⟩

Article dans une revue hal-03939191v1
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Ionizing radiations induce shared epigenomic signatures unraveling adaptive mechanisms of cancerous cell lines with or without methionine dependency

Youssef Siblini , Céline Chéry , Pierre Rouyer , Jérémie Raso , Amélia Julien et al.

Clinical Epigenetics, 2021, 13 (1), pp.212. ⟨10.1186/s13148-021-01199-y⟩

Article dans une revue hal-03465924v1
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Long-Term Overconsumption of Fat and Sugar Causes a Partially Reversible Pre-inflammatory Bowel Disease State

Djésia Arnone , Marie Vallier , Sébastien Hergalant , Caroline Chabot , Ndeye Coumba Ndiaye et al.

Frontiers in Nutrition, 2021, 8, pp.758518. ⟨10.3389/fnut.2021.758518⟩

Article dans une revue hal-03430881v1

Low-frequency coding variants associated with body-mass-index impact the success of bariatric surgery

Darlène Antoine , Rosa-Maria Guéant-Rodriguez , Jean-Claude Chèvre , Sébastien Hergalant , Tanmay Sharma et al.

Journal of Clinical Endocrinology and Metabolism, 2021, pp.dgab774. ⟨10.1210/clinem/dgab774⟩

Article dans une revue hal-03411898v1

Vitamin B 12 Deficiency Dysregulates m6A mRNA Methylation of Genes Involved in Neurological Functions

Pauline Mosca , Aurélie Robert , Jean‐marc Alberto , Marie Meyer , Urbi Kundu et al.

Molecular Nutrition and Food Research, 2021, 65 (17), pp.2100206. ⟨10.1002/mnfr.202100206⟩

Article dans une revue hal-03300551v1
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Clinical, biological, and molecular genetic features of Richter syndrome and prognostic significance: a study of the French Innovative Leukemia Organization

Charline Moulin , Francis Guillemin , Thomas Remen , Florian Bouclet , Sébastien Hergalant et al.

American Journal of Hematology, 2021, 96 (9), pp.E311-E314. ⟨10.1002/ajh.26239⟩

Article dans une revue hal-03238759v1

Fetal Programming by Methyl Donor Deficiency Produces Pathological Remodeling of the Ascending Aorta

Brittany Balint , Sébastien Hergalant , Jean-Michel Camadro , Sébastien Blaise , Laetitia Vanalderwiert et al.

Arteriosclerosis, Thrombosis, and Vascular Biology, 2021, 41 (6), pp.1928-1941. ⟨10.1161/atvbaha.120.315587⟩

Article dans une revue hal-03238712v1

Facteurs pronostiques clinico-biologiques et génomiques de la survie dans le syndrome de Richter

C. Moulin , F. Guillemin , T. Remen , F. Bouclet , H. Augé et al.

Epidemiology and Public Health = Revue d'Epidémiologie et de Santé Publique, 2021, 69 (1), pp.52. ⟨10.1016/j.respe.2020.11.010⟩

Article dans une revue hal-03238804v1
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Analysis of fibroblasts from patients with cblC and cblG genetic defects of cobalamin metabolism reveals global dysregulation of alternative splicing

Charif Rashka , Sébastien Hergalant , Natacha Dreumont , Abderrahim Oussalah , Jean-Michel Camadro et al.

Human Molecular Genetics, 2020, 29 (12), pp.1969-1985. ⟨10.1093/hmg/ddaa027⟩

Article dans une revue hal-03100129v1
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Ki‐67 and MCM6 labelling indices are correlated with overall survival in anaplastic oligodendroglioma, IDH1 ‐mutant and 1p/19q‐codeleted: a multicenter study from the French POLA network

Celso Pouget , Sébastien Hergalant , Emilie Lardenois , Stéphanie Lacomme , Rémi Houlgatte et al.

Brain Pathology, 2020, 30 (3), pp.465-478. ⟨10.1111/bpa.12788⟩

Article dans une revue hal-02299833v1

Large-Scale Proteomics Identifies Distinct Signatures for Richter Syndrome and De Novo Diffuse Large B-Cell Lymphoma: A French Study from the Filo Group

Romain Morizot , Sébastien Hergalant , Romain Piucco , Florian Bouclet , Anne Quinquenel et al.

Blood, 2020, 136 (Supplement 1), pp.29-30. ⟨10.1182/blood-2020-137061⟩

Article dans une revue hal-03054165v1

Clinico-Biological, Molecular and Prognostic Features of Patients with Diffuse Large B-Cell Lymphoma-Variant of Richter Syndrome: A Multicenter Retrospective Study of the French Innovative Leukemia Organization

Charline Moulin , Francis Guillemin , Thomas Rémen , Florian Bouclet , Hélène Augé et al.

Blood, 2020, 136 (Suppl 1), pp.3-5. ⟨10.1182/blood-2020-137101⟩

Article dans une revue hal-03054135v1
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Mobilized Multipotent Hematopoietic Progenitors Stabilize and Expand Regulatory T Cells to Protect Against Autoimmune Encephalomyelitis

Sarantis Korniotis , Maud d'Aveni , Sébastien Hergalant , Hélène Letscher , Emmanuel Tejerina et al.

Frontiers in Immunology, 2020, 11, pp.607175. ⟨10.3389/fimmu.2020.607175⟩

Article dans une revue hal-03087148v1
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First identification of dopamine receptors in pikeperch, Sander lucioperca, during the pre-ovulatory period

Jennifer Roche , Sébastien Hergalant , Amandine Depp , Imen Ben Ammar , Anne-Gaelle Lafont et al.

Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2020, 36, pp.100747. ⟨10.1016/j.cbd.2020.100747⟩

Article dans une revue hal-02975537v1
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Microenvironment Remodeling and Subsequent Clinical Implications in Diffuse Large B-Cell Histologic Variant of Richter Syndrome

Hélène Augé , Anne-Béatrice Notarantonio , Romain Morizot , Anne Quinquenel , Luc-Matthieu Fornecker et al.

Frontiers in Immunology, 2020, 11, pp.594841. ⟨10.3389/fimmu.2020.594841⟩

Article dans une revue hal-03087137v1
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Folate can promote the methionine-dependent reprogramming of glioblastoma cells towards pluripotency

Racha Zgheib , Shyue-Fang Battaglia-Hsu , Sébastien Hergalant , Maelle Quéré , Jean-Marc Alberto et al.

Cell Death and Disease, 2019, 10 (8), pp.596. ⟨10.1038/s41419-019-1836-2⟩

Article dans une revue hal-02265213v1

Wnt Signaling Pathways Are Dysregulated in Rat Female Cerebellum Following Early Methyl Donor Deficiency

Jérèmy Willekens , Sébastien Hergalant , Grégory Pourié , Fabian Marin , Jean-Marc Alberto et al.

Molecular Neurobiology, 2019, 56 (2), pp.892-906. ⟨10.1007/s12035-018-1128-3⟩

Article dans une revue hal-01804097v1
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Inherited disorders of cobalamin metabolism disrupt nucleocytoplasmic transport of mRNA through impaired methylation/phosphorylation of ELAVL1/HuR

Shyue-Fang Battaglia-Hsu , Rose Ghemrawi , David Coelho , Natacha Dreumont , Pauline Mosca et al.

Nucleic Acids Research, 2018, 46 (15), pp.7844-7857. ⟨10.1093/nar/gky634⟩

Article dans une revue hal-01844820v1

Cytoplasmic overexpression of RNA-binding protein HuR is a marker of poor prognosis in meningioma, and HuR knockdown decreases meningioma cell growth and resistance to hypoxia

Guillaume Gauchotte , Sébastien Hergalant , Charlène Vigouroux , Matthieu Casse , Rémi Houlgatte et al.

The Journal of pathology and bacteriology, 2017, 242 (4), pp.421 - 434. ⟨10.1002/path.4916⟩

Article dans une revue hal-01718786v1
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Relapsed diffuse large B-cell lymphoma present different genomic profiles between early and late relapses

Julien Broséus , Gaili Chen , Sébastien Hergalant , Gérard Ramstein , Nicolas Mounier et al.

Oncotarget, 2016, 7 (51), pp.83987-84002. ⟨10.18632/oncotarget.9793⟩

Article dans une revue hal-02314515v1

Identification of master genes involved in liver key functions through transcriptomics and epigenomics of methyl donor deficiency in rat: Relevance to nonalcoholic liver disease

Gaili Chen , Julien Broséus , Sébastien Hergalant , Audrey Donnart , Catherine Chevalier et al.

Molecular Nutrition and Food Research, 2015, 59 (2), pp.293 - 302. ⟨10.1002/mnfr.201400483⟩

Article dans une revue istex hal-01755906v1
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A new data mining approach for the detection of bacterial promoters combining stochastic and combinatorial methods

Catherine Eng , Charu Asthana , Bertrand Aigle , Sébastien Hergalant , Jean-Francois Mari et al.

Journal of Computational Biology, 2009, 16 (9), pp.1211-1225. ⟨10.1089/cmb.2008.0122⟩

Article dans une revue inria-00419969v1
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Exhaustive Identification of Pleiotropic Loci for Serum Leptin Levels in the NHGRI-EBI Genome-Wide Association Catalog

Anthony Haidamous , David Meyre , Sébastien Hergalant

Journées Ouvertes en Biologie, Informatique et Mathématiques, Société Française de Bioinformatique, Jul 2025, Bordeaux, France. pp.231

Communication dans un congrès hal-05219695v1
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adverSCarial: a toolkit for exposing classifier vulnerabilities in single-cell transcriptomics

Ghislain Fievet , Julien Broséus , David Meyre , Sébastien Hergalant

ISMB/ECCB2025, Jul 2025, Liverpool, United Kingdom

Communication dans un congrès hal-05222861v1
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Multi-omics characterization of Richter syndrome unlocks classifiers and predictors of outcome into broader and heterogeneous lymphoma datasets

Sébastien Hergalant , Romain Piucco , Ghislain Fiévet , Emil Chteinberg , Stephan Stilgenbauer et al.

JOBIM2023, Jun 2023, Plouzané (Brest), France

Communication dans un congrès hal-04147573v1

Caractérisation du profil protéomique du Syndrome de Richter

Romain Piucco , Romain Morizot , Luc-Matthieu Fornecker , Pierre Feugier , Sébastien Hergalant et al.

6e journées de la French Innovative Leukemia Organization, Oct 2020, Nancy, France

Communication dans un congrès hal-03176937v1

Etude du méthylome et du transcriptome dans le Syndrome de Richter

Sébastien Hergalant , Julien Broséus

6e journées du FILO, Oct 2020, Nancy, France

Communication dans un congrès hal-03177006v1

Description d'une nouvelle signature immunitaire dans le contexte de la rechute après allogreffe de Cellules Souches Hématopoïétiques

Anne-Béatrice Notarantonio , Romain Piucco , Sébastien Hergalant , Laura Boulangé , Jordan Brouard et al.

6ème Journée de la French Innovative Leukemia Organization, Oct 2020, Nancy, France

Communication dans un congrès hal-02976925v1

Ki-67 and MCM6 labelling index are correlated with overall survival in anaplastic oligodendroglioma, IDH1-mutant and 1p/19q codeleted: a multicenter study from the French POLA Network

Celso Pouget , Sébastien Hergalant , Emilie Lardenois , Shyue-Fang Battaglia-Hsu , Rémi Houlgatte et al.

31 st European Congress of Pathology, Sep 2019, Nice, France. pp.1-436, ⟨10.1007/s00428-019-02631-8⟩

Communication dans un congrès hal-03012220v1
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Data Mining Using Hidden Markov Models (HMM2) to Detect Heterogeneities into Bacteria Genomes

Catherine Eng , Annabelle Thibessard , Sébastien Hergalant , Jean-François Mari , Pierre Leblond

Journées Ouvertes Biologie, Informatique et Mathématiques - JOBIM 2005, JOBIM, Jul 2005, Lyon/France, France

Communication dans un congrès inria-00000142v1
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Fouille de données du génome à l'aide de modèles de Markov cachés

Sébastien Hergalant , Bertrand Aigle , Pierre Leblond , Jean-François Mari

Extraction et Gestion de Connaissances - EGC 2005, Jan 2005, Paris/France, France. pp.141 -- 148

Communication dans un congrès inria-00001213v1
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Classification non supervisée par HMM de sites de fixation de facteurs de transcription chez les bactéries

Sébastien Hergalant , Bertrand Aigle , Bernard Decaris , Jean-François Mari , Pierre Leblond

5èmes Journées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'04, 2004, Montréal, Canada, 1 p

Communication dans un congrès inria-00107788v1

HMM, an Efficient Way to Detect Transcriptional Promoters in Bacterial Genomes?

Sébastien Hergalant , Bertrand Aigle , Bernard Decaris , Jean-François Mari , Pierre Leblond

European Conference on Computational Biology - ECCB'2003, Sep 2003, Paris, France, pp.417--419

Communication dans un congrès inria-00099570v1

Intragenomic reiterations detection using hidden Markov models

Sébastien Hergalant , Bertrand Aigle , Bernard Decaris , Pierre Leblond , Jean-François Mari

10th International Conference on Intelligent Systems for Molecular Biology - ISMB 2002, Aug 2002, Edmonton, Canada, 1 p

Communication dans un congrès inria-00100914v1

Fouille de données à l'aide de HMM : Application à la détection de réitérations intragénomiques

Sébastien Hergalant , Bertrand Aigle , Bernard Decaris , Pierre Leblond , Jean-François Mari

Journées Ouvertes Biologie Informatique Mathématiques - JOBIM'02, François Coste - Elisabeth Lebret, 2002, Saint Malo, France, pp.269-273

Communication dans un congrès inria-00100752v1

Deciphering the Gene Expression Signature of High-Grade B-cell Lymphomas with 11q Aberrations

Emil Chteinberg , Gioia Di Stefano , Henry Löffler-Wirth , Annette M. Staiger , Sina Hillebrecht et al.

57th European Society of Human Genetics (ESHG) Conference, Jun 2024, Berlin, Germany. European Journal of Human Genetics, 32 (S2), SPRINGERNATURE, pp.1231-1841, 2024, ⟨10.1038/s41431-024-01734-4⟩

Proceedings/Recueil des communications hal-05042510v1

Multistage epigenome-wide association study identifies highly accurate epigenomic signatures in association with hepatocellular carcinoma: The HCC epigenome score

Abderrahim Oussalah , Ryan Hlady , Sébastien Hergalant , Jean-Pierre Bronowicki , Jean-Louis Guéant et al.

Journal of Hepatology, 77 (Supp 1), pp.S923-S924, 2022, ⟨10.1016/s0168-8278(22)02130-4⟩

Proceedings/Recueil des communications hal-03950374v1

Higher Expression of CD44 in De Novo Diffuse Large B-cell Lymphoma Than in Richter Syndrome

Charline Moulin , Sébastien Hergalant , Romain Piucco , Romain Morizot , Christine Carapito et al.

Laboratory Investigation, 102, pp.942-1088, 2022, ⟨10.1038/s41374-022-00758-y⟩

Proceedings/Recueil des communications hal-03952983v1

Cardiac manifestations of inherited metabolic disease linked to cellular vitamin B12 (cobalamin) uptake: Study in murine model of invalidation of Mtr gene in the heart

V.J. Kosgei , C. Arnold , F. Elkhafifi , P. Lacolley , Sébastien Hergalant et al.

Archives of Cardiovascular Diseases Supplements, 11 (2), pp.242, 2019, ⟨10.1016/j.acvdsp.2019.02.131⟩

Proceedings/Recueil des communications hal-02266368v1
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Comprehensive Identification of Pleiotropic Associations for Chronic Lymphocytic Leukemia

Anthony Haidamous , Vivian Zingui , Océane Reichert , David Meyre , Sébastien Hergalant

Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. JOBIM proceedings posters, pp.161, 2025

Poster de conférence hal-05219704v1
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XAItest: Evaluating XAI-Based Feature Discovery Methods

Ghislain Fievet , Julien Broséus , David Meyre , Sébastien Hergalant

ISMB/ECCB 2025, Jul 2025, Liverpool, United Kingdom. ⟨10.18129/B9.bioc.XAItest⟩

Poster de conférence hal-05222882v1
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Assessing the vulnerability of single-cell RNA-sequencing classifiers to adversarial attacks with adverSCarial

Ghislain Fievet , Julien Broséus , David Meyre , Sébastien Hergalant

European Conference on Computational Biology (ECCB), Sep 2024, Turku (Finlande), Finland

Poster de conférence hal-04768105v1
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Comprehensive Identification of Pleiotropic Associations for Clonal Haematopoiesis of Indeterminate Potential

Esther Hazane Leroyer , David Meyre , Simona Pagliuca , Sébastien Hergalant

EHA2024, Jun 2024, Madrid, Spain. 419477, pp.P1390, 2024

Poster de conférence hal-04764105v1
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isomiRs as a feature for comparing microRNA regulatory networks in aggressive lymphomas

Romain Piucco , Ghislain Fievet , Julien Broséus , Sébastien Hergalant

23rd European Conference on Computational Biology - ECCB2024, Sep 2024, Turku (Finlande), Finland

Poster de conférence hal-04767947v1
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adverSCarial: a tool for evaluating adversarial attacks on single-cell transcriptomics classifiers

Ghislain Fievet , Sébastien Hergalant

JOBIM2023, Jun 2023, Plouzané (Brest), France. , 2023

Poster de conférence hal-04160225v1
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Integrating the miRnome into multiple omics of Richter Transformation: Insights into the development of aggressive lymphomas

Romain Piucco , Ghislain Fievet , Pierre Feugier , Julien Broséus , Sébastien Hergalant

JOBIM2023, Jun 2023, Plouzané (Brest), France. , 2023

Poster de conférence hal-04160201v1

Data Mining Using Hidden Markov Models (HMM2) to Detect Heterogeneities into Bacteria Genomes

Catherine Eng , Annabelle Thibessard , Sébastien Hergalant , Jean-François Mari , Pierre Leblond

6. Journées Ouvertes Biologie, Informatique et Mathématiques - JOBIM, Jul 2005, Lyon, France. , 1 p., 2005

Poster de conférence hal-02833554v1
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Fouille de données du génome à l'aide de modèles de Markov cachés

Sébastien Hergalant , Bertrand Aigle , Pierre Leblond , Jean-François Mari

Extraction et gestion des connaissances. EGC 2005, Cépaduès, 2005, Revue des Nouvelles Technologies de l'Information, 2-85428-677-4 2-85428-682-0 (vol. 1) 2-85428-683-9 (vol. 2)

Chapitre d'ouvrage hal-02832934v1