
Simon Labarthe
Chargé de recherche INRAE
82
Documents
Affiliations actuelles
- Pleiade, from patterns to models in computational biodiversity and biotechnology (PLEIADE)
- Biodiversité, Gènes & Communautés (BioGeCo)
Identifiants chercheurs
Présentation
https://slabarthe.pages.mia.inra.fr/website/
- 2020 - ... : chargé de recherche dans l'équipe Pléiade. Inrae (Biogeco) - Inria (Bordeaux Sud-Ouest) team.
- 2019-2020 : visteur à UC Davis dans le laboratoire d'A.Bäumler.
- 2014-2019 : chargé de recherche à MaIAGE. Inrae (Jouy-en-Josas).
- 2010-2014 : Phd + ATER dans l'équipe Carmen (Inria Bordeaux sud-Ouest).
Publications
Publications
|
Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling 6 may 2025 / Modélisation du microbiomeNEM 2025 - Journées Nutrition & Ecologie Microbienne, workshop modélisation du microbiome, May 2025, Rennes (Distanciel), France
Communication dans un congrès
hal-05059688
v1
|
|
cMFA for multi-omics data integration in microbial community modelsPopulation Dynamics : From Data to Models 2025, Mar 2025, Sophia antipolis, France
Communication dans un congrès
hal-04996155
v1
|
|
Development of a microfluidic quantitative PCR chip to monitor the dynamics of a synthetic microbial community on grapevine with potential biocontrol effects against downy mildewApéro VITAE - webinaire interne, VITAE (Léa Cabrol-Froget), Feb 2025, Villenave-d'Ornon, France
Communication dans un congrès
hal-05108055
v1
|
cMFA Inference method for multi-omics data integration in microbial community modelsSMAI 2025 - 12ème Biennale Française des Mathématiques Appliquées et Industrielles, SMAI, Jun 2025, Carcans-Maubuisson (Gironde), France
Communication dans un congrès
hal-05105572
v1
|
|
|
Apport des recherches sur le microbiote aux futures stratégies de biocontrôle - Résultats du projet VITAESéminaire Chaire ASVV & INNO’VIN – « Vins & Environnement » #8 | Le biocontrôle est-il opérant ?, Apr 2025, Villenave d'Ornon, France
Communication dans un congrès
hal-05069786
v1
|
|
Pest detection from a biology-informed inverse problem and pheromone sensorsEGU General Assembly 2025, Apr 2025, Vienna, Austria. ⟨10.5194/egusphere-egu25-5850⟩
Communication dans un congrès
hal-05049572
v1
|
Pest detection from a biology-informed inverse problem and pheromone sensorsDSABNS 2024 - 15th Conference on Dynamical Systems Applied to Biology and Natural Sciences, Feb 2024, Lisbonne, Portugal
Communication dans un congrès
hal-04481765
v1
|
|
|
Pesticide-Free viticulture: towards agroecological wine-producing socioecosystems45ème congrès mondial de la Vigne et du Vin, Oct 2024, Dijon, France
Communication dans un congrès
hal-04732866
v1
|
Modelling the dynamics of Salmonella infection in the gut at the bacterial and host levelsSBMI 2023 - 7th International Symposium on Systems Biology of Microbial Infection, Sep 2023, Jena, Germany
Communication dans un congrès
hal-04229116
v1
|
|
|
Towards microbiota-based disease management: analysis of grapevine microbiota in plots with contrasted levels of downy mildew infection22nd GiESCO (Group of international Experts for Cooperation on Vitivinicultural Systems) 2023, Jul 2023, Ithaca, New York, United States
Communication dans un congrès
hal-04180612
v2
|
|
Accelerating metabolic models evaluation with statistical metamodels: application to Salmonella infection modelsCEMRACS 2021 - Data Assimilation and Reduced Modeling for High Dimensional Problems, Jul 2021, Luminy (CIRM, Centre International de Rencontres Mathématiques), France. pp.187-217, ⟨10.1051/proc/202373187⟩
Communication dans un congrès
hal-03635862
v2
|
|
Metatranscriptomics and metabolic modeling to identify bacterial metabolic interactions during the manufacture of a model pressed cheese.FOODMICRO 2022, Aug 2022, Athènes, Greece
Communication dans un congrès
hal-03781287
v1
|
|
Métatranscriptomique et modèle métabolique pour identifier la succession des métabolismes bactériens en interaction lors de la fabrication d’un fromage modèle à pâte pressée.23ème édition du colloque du Club des Bactéries Lactiques, UMR INRAE - Institut Agro STLO (Science et Technologie du Lait et de l’Œuf), Jun 2022, Rennes, France
Communication dans un congrès
hal-03694338
v1
|
|
Inferring characteristics of bacterial swimming in biofilm matrix from time-lapse confocal laser scanning microscopyIbSB 2022 - 6th International Symposium "Image-based Systems Biology", Sep 2022, Jena, Germany. ⟨10.7554/eLife.76513⟩
Communication dans un congrès
hal-03753533
v1
|
|
Characterizing microbial interactions in controlled and natural microbial communitiesWorkshop SymBioDiversity, May 2022, Santiago, Chile
Communication dans un congrès
hal-03857848
v2
|
Metabolic modelling deciphers interactions in a cheese bacterial communityMetaboday 2021, Mar 2021, Bordeaux, France
Communication dans un congrès
hal-03531761
v1
|
|
|
Modeling and inference of bacterial swimmers in biofilmsCEMRACS 2021, Jul 2021, Marseille, France
Communication dans un congrès
hal-03352441
v1
|
Identification de la fraction active des bactéries du microbiote améliorant la résistance à la colonisation intestinale contre les entérocoques résistants à la vancomycineWebinaire MICA-INRAE : Comprendre et valoriser les communautés microbiennes, Sep 2020, Distanciel, France
Communication dans un congrès
hal-04305004
v1
|
|
|
Omic-based model of the gut microbiotaWorkshop 'Transport in the digestive tract : experiments, modeling, applications to microbiology', Oct 2020, Paris, France
Communication dans un congrès
hal-03352438
v1
|
|
MISTIFY PROJECT. ECOLOGY OF SALMONELLA TYPHIMURIUM INFECTION: A MATHEMATICAL MODELING INSIGHTAnnual meeting of Agreenskills program, Apr 2019, Bruxelles, Belgium
Communication dans un congrès
hal-03352429
v1
|
Parameter estimation for dynamical systems using an FDA approach11th International Conference of the ERCIM WG on Computational and Methodological Statistics (CMStatistics 2018), Dec 2018, Pise, Italy
Communication dans un congrès
hal-02045430
v1
|
|
|
Influence of Transmural Slow-Conduction Zones on the Long- Time Behaviour Of Atrial Arrhythmia. A Numerical Study with a Human Bilayer Atrial ModelCINC - Computing in Cardiology 2013, Sep 2013, Zaragoza, Spain. pp.1187-1190
Communication dans un congrès
hal-00921262
v1
|
|
A Computational Bilayer Surface Model of Human AtriaFIMH 2013 - 7th International Conference on Fonctional Imaging and Modeling of the Heart, S.Ourselin, D.Ruecker, N.Smith, Jun 2013, London, United Kingdom
Communication dans un congrès
hal-00802104
v2
|
|
A computational bilayer surface model of human atriaFIMH 2013 - 7th International Conference on Functional Imaging and Modeling of the Heart, Jun 2013, London, United Kingdom. pp.27-34, ⟨10.1007/978-3-642-38899-6_4⟩
Communication dans un congrès
hal-01606999
v1
|
|
A Bilayer Representation of the Human AtriaEMBC - 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2013, EMBS, Jul 2013, Osaka, Japan. pp.1530-1533, ⟨10.1109/EMBC.2013.6609804⟩
Communication dans un congrès
hal-00837671
v1
|
|
A Semi-Automatic Method To Construct Atrial Fibre Structures : a Tool for Atrial SimulationsCinC 2012 - Computing in Cardiology, Sep 2012, Krakow, Poland. pp.881-884
Communication dans un congrès
hal-00759191
v2
|
|
Global and Directional Activation Maps for Cardiac Mapping in ElectrophysiologyCINC 2012 - Computing In Cardiology - 2012, Sep 2012, Krakow, Poland. pp.349-352
Communication dans un congrès
hal-00760451
v1
|
|
From Body Surface Potential to Activation Maps on the Atria: a Machine Learning TechniqueCINC - Computing in Cardiology 2012, Sep 2012, Krakow, Poland. pp.125-128
Communication dans un congrès
hal-00759210
v1
|
|
cMFA for multi-omics data integration in microbial community modelsDSABNS 2025 - 16th Dynamical Systems applied on Biology and Natural Sciences, Jan 2025, Naples, Italy
Poster de conférence
hal-04939527
v1
|
|
cMFA for multi-omics data integration in microbial community modelsJournées scientifiques 2025 Agroécologie et Numérique, Jan 2025, Dijon, France
Poster de conférence
hal-04939529
v1
|
|
cMFA for multi-omics data integration in microbial community modelsPopulation Dynamics : From Data to Models 2025, Mar 2025, Sophia Antipolis, France
Poster de conférence
hal-04996135
v1
|
|
Developing a culturomic approach to build a collection of grapevine foliar microorganisms with potential biocontrol activity against downy mildewJournées Jean Chevaugeon - 14e Rencontres de Phytopathologie - Mycologie, Jan 2024, Aussois, France.
Poster de conférence
hal-04842411
v1
|
|
cMFA for multi-omics data integration in microbial community modelsCJC MA2024 - Congrès des Jeunes Chercheur.e.s en Mathématiques Appliquées, Oct 2024, Lyon, France.
Poster de conférence
hal-04874275
v1
|
|
Modelling the dynamics of Salmonella infection in the gut at the bacterial and host levelsISMB/ECCB 2023 - 31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology, Jul 2023, Lyon, France.
Poster de conférence
hal-04183811
v1
|
|
Towards microbiota-based disease management: analysis of grapevine microbiota in plots with contrasted levels of downy mildew infection22nd GiESCO CONGRESS (GiESCO 2023), Jul 2023, Ithaca, New York, United States. , IVES Conference Series Vine & Wine, 2023, IVES Conference Series Vine & Wine
Poster de conférence
hal-04180613
v1
|
|
Modelling the dynamics of Salmonella infection in the gut at the bacterial and host levelsSBMI 2023 - 7th International Symposium on Systems Biology of Microbial Infection, Sep 2023, Jena, Germany.
Poster de conférence
hal-04229130
v1
|
|
Pest detection by inversion of a pheromone dispersion modelECMTB 2022 - 12th European Conference on Mathematical and Theoretical Biology, Sep 2022, Heidelberg, Germany
Poster de conférence
hal-03777604
v1
|
|
Modelling the dynamics of Salmonella infection in the gut at the bacterial and the host levelMicrobial communities: current approaches and open challenges, Oct 2022, Cambridge, United Kingdom
Poster de conférence
hal-03839405
v1
|
|
Dynamic Flux Balance Analysis with MetamodelsJOBIM 2022 - Les Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France.
Poster de conférence
hal-04236775
v1
|
|
A multi-scale epidemic model of enteric infection with heterogeneous shedding resulting from host-microbiota-pathogen interactionsECMTB 2022 - 12th European Conference on Mathematical and Theoretical Biology, Sep 2022, Heidelberg, Germany.
Poster de conférence
hal-03834709
v1
|
|
Dynamic Flux Balance Analysis with MetamodelsMicrobial communities: current approaches and open challenges, Oct 2022, Cambridge, United Kingdom.
Poster de conférence
hal-04252041
v1
|
|
Modelling the dynamics of Salmonella infection in the gut at the bacterial and host levelsJOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France
Poster de conférence
hal-03839374
v1
|
Modelling metabolic network dynamics in a cheese bacterial communityCMSB, The 19th conference on Computational Methods in Systems Biology, Sep 2021, Bordeaux, France
Poster de conférence
hal-03533795
v1
|
|
Modelling metabolic network dynamics in a cheese bacterial communityMPA, Metabolic Pathway Analysis, Aug 2021, Knoxville, United States
Poster de conférence
hal-03533786
v1
|
|
Modelling metabolic network dynamics in a cheese bacterial communityJOBIM,Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
Poster de conférence
hal-03533781
v1
|
|
|
A spatially structured model to investigate key drivers of the gut microbiota biogeography in humans11th European Conference on Mathematical and Theoretical Biology (ECMTB 2018) https://www.ecmtb2018.org/, Jul 2018, Lisbon, Portugal.
Poster de conférence
hal-04278352
v1
|
|
Numerical modeling of the electrical activity of the atria and the pulmonary veinsWorkshop IHU Liryc, Oct 2013, Pessac, France
Poster de conférence
hal-00926441
v1
|
|
Superposition de couches de fibres et propagations anormales : une étude numériquePrintemps de la Cardiologie, Apr 2013, Marseille, France
Poster de conférence
hal-00926480
v1
|
|
Simulation numérique de l'activité électrique dans l'oreillette gauche et les veines pulmonairesPrintemps de la Cardiologie, Apr 2012, Bordeaux, France
Poster de conférence
hal-00785607
v1
|
|
Modélisation bidimensionnelle d'un problème de réaction-diffusion anisotrope hétérogène en couche mince appliquée à la cardiologieCANUM - 2012, May 2012, Super-Besse, France
Poster de conférence
hal-00785621
v1
|
Mathématiques et cardiologie : modéliser pour mieux comprendre les arythmies auriculaires5 jeunes chercheurs d'avenir 2015, 1, Editions le Pommier, pp.192, 2015, Promesses de la Science, 978-2-7465-0937-5
Chapitre d'ouvrage
hal-02795569
v1
|
|
Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology2025
Autre publication scientifique
hal-05084268
v1
|
|
Mathematical models in microbial ecology2019
Autre publication scientifique
hal-03352423
v1
|
|
Inference Method cMFA for multi-omics data integration in microbial community models2025
Pré-publication, Document de travail
hal-05105798
v1
|
|
Biology-Informed inverse problems for insect pests detection using pheromone sensors2025
Pré-publication, Document de travail
hal-04572831
v3
|
|
Deterministic limit of a stochastic individual-based model of biological tissue interacting with diffusing chemicals2025
Pré-publication, Document de travail
hal-04336174
v3
|
|
Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling2023
Pré-publication, Document de travail
hal-04088301
v2
|
A mixture model for the dynamic of the gut mucus layer2015
Pré-publication, Document de travail
hal-01270350
v1
|
|
Modélisation de l'activité électrique des oreillettes et des veines pulmonairesModélisation et simulation. Université Victor Segalen - Bordeaux II, 2013. Français. ⟨NNT : ⟩
Thèse
tel-00925253
v1
|
|
Contributions à la modélisation mathématiques en écologie microbienne, des données aux modèlesMathématiques [math]. Université de bordeaux, 2024
HDR
tel-04654712
v1
|
Chargement...
Chargement...