
Solenn Stoeckel
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP)
- Dynamique et durabilité des écosystèmes : de la source à l’océan (DECOD)
Presentation
Researcher in theoretical and applied contemporary population genetics.
Research Interests I'm interested in theoretical and applied population genetics, and population ecology in general. I mostly worked on partially clonal and allogamous species. I try to understand and characterize the dynamics of genetic diversity over time and explicit space for monitored contemporary species that matters for ecosystems and human activities. I mostly use forward exact and approximated formalisms of population genetics and probabilities of identity to decipher relashionship between individuals over couples to hundreds of generations. At these limited scales, backward highly-approximated population genetic formalisms, like using branching processes, are not enough accurate to track population trajectories of genetic diversity and to infer biological and ecological parameters constraining the evolution of populations. I use and teach probability, stochastic processes, high-troughput computation, algorithm, Bayesian and frequentist statistics, supervised machine learning, mating system and reproductive modes in Eucaryots. I'm finally interested and teach epistemology, history of sciences and science policies.
Education 1997: Baccalaureate in Sciences, Lycée Descartes, Tours. Sep. 2002: DEA Ecology, Evolution and population management (Univ. Tours) Juin 2006: Doctorate in Forest and landscape science, ENGREF-AgroParisTech, Paris. Dir. N. Frascaria-Lacoste & S. Mariette. Sep 2017: Habilitation à Diriger les Recherches Vie-Agro-Santé, Univ. Rennes1.
Initial trainings 1999: Training in population dynamics and management using modelling and numerical computation to predict wild foxes vaccinations to control rabies disease on island systems, University of Tours (pharmacology lab), 3 months. 2000: Training in Spatial Ecology of a tritrophic life-cycle in the regional natural park of Brenne with University of Tours and the MNHN Paris, 3 months. 2001: Training in Behvioural Ecology to characterize the mating system of Cardiocondyla elegans in Loire valley, University of Tours, 6 months.
Profesional positions in research 2002-2006: Doctorate on the reproductive modes and its consequences on genetic diversity of wild cherry populations in France, supervised by Dr Stephanie Mariette and Pr Nathalie Frascaria-Lacoste, Cemagref, University Paris XI & AgroParisTech-ENGREF. 2006: Short Postdoc Cemagref, 3 months. 2006-2007: Temporary lecturer (ATER, full time), University Paris 6. Research with Pr Aboubakry Sarr and Pr Thierry Robert, Paris 6/XI. 2007-2012: Tenured researcher junior, INRAE, dept Plant Health and Environment (SPE), UMR Bio3P, team Ecology and Genetics of insects, Le Rheu. 2012: Visiting scientist/Postdoc, Evolutionary Biology Centre, Uppsala University, Mattias Jakobsson's team, Uppsala, Sweden. 2012-2015: Tenured senior researcher, INRAE, dept Plant Health and Environment (SPE), UMR IGEPP, team Ecology and Genetics of insects, Le Rheu. 2015-2024: Tenured senior researcher, INRAE, dept Plant Health and Environment (SPE), UMR IGEPP, team Demecology: Dynamics, Evolution, Modelling, Ecology, Le Rheu. Currently, from 2024: Tenured senior reserchear, INRAE, dept Aquatic Ecosystems, Water Resources and Risks (AQUA), UMR DECOD from source to sea, Rennes.
Courses Taught Teaching unit ALEA: Stochastic models for population ecology in Master2 MODE (Modelling in Ecology), Univerity Rennes1. https://osur.univ-rennes.fr/ue-bee-m2-ALEA Teaching unit PGG: Population Genetics and Genomics in Master2 MODE and BEE (Biodiversity, Ecology and Evolution). https://osur.univ-rennes.fr/ue-bee-m2-GGP I previously taught Population genetics, Stastistics, Population dynamics, Epistemology, Advanced numerical computation, Introduction to probability, Methodology in ecology, History of sciences, Population management, Behavioural ecology, Spatial ecology, Genotypings. I did most of these courses at University Paris IX (Orsay), Paris 6 (Jussieu), University of Rennes1, University Of Bordeaux, University of Lille, Institut Agro, AgroParisTech, Paris 7 (Diderot), CNRS Formation and INRAE Formation for resaerchers and professionals.
List of projects
Present and past lab members
Past visiting researchers Pr. Maria E. Orive, KU (Mar. 2017, August 2019). Dr Stacy Krueger-Hadfield, UAB & VIMS (Sept. 2023). Dr Ekaterina Bocharova, RAS & VNIRO Moscow (June 2018, Nov.-Dec. 2019, Metchnikov grant).
Early profesionnal experiences I worked out of research to fund my studies before engaging into a PhD. In my experience, this is an important step to open mind on the society, to understand why engaging in long studies as student, and to gain perspective on the research governance and profession. I list these small jobs as an example of this practice for my student.
- Fire- and rescue-man at SDIS 37 with a corpus of related diplomas and formations. I managed a small environment and animal intervention team (7 years, since I was 17, week-ends, evenings & hollidays).
- Child, teenager and disable educator with a corpus of related diplomas (BAFA, lifeguard, horse instructor, nature specialisation; around 8 months in total).
- Agricultural worker in berries, cereals, goat and cow farms (~6 months in total).
- Worker in a book factory (varnishing and lamination line; 2 weeks).
- Book seller ( 2 weeks).
- Bartender in London (2 weeks). Nice experience for improving english language ;)
Skills
Publications
Publications
The Durance River valley: a great ecological system to study dispersalJournée thématique du LabEx ARBRE "Maladies forestières et changements globaux", Mireia Gomez-Gallego, Jun 2023, Champenoux, France, France
Conference papers
hal-04125869
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Temporal genetic signatures of rapid demographic changes caused by directional selection, the case of a pathogen population overcoming plant resistanceSéminaire MEE (Modélisation en écologie et évolution), May 2022, Montpellier, France
Conference papers
hal-04137877
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Genetic signatures of a range expansion in natura: how clones play leapfrog?Congress of the European Society for Evolutionary Biology, Lukáš Kratochvíl, Aug 2022, Prague, Czech Republic
Conference papers
hal-04137682
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Temporal genetic signatures of rapid demographic changes caused by directional selection, the case of a pathogen population overcoming plant resistancePetit Pois Déridé 2022; 40ème réunion du Groupe d'Étude de Biologie et Génétique des Populations, May 2022, Lille, France
Conference papers
hal-04137858
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Demographic and genetic consequences of a rapid adaptation event in the poplar rust pathogen2ème Réunion du Réseau E3GP3, Nov 2022, Paris, France
Conference papers
hal-04137651
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Demographic and genomic consequences of a rapid adaptation event in the poplar rust pathogenCongress of the European Society for Evolutionary Biology, Lukáš Kratochvíl, Aug 2022, Prague, Czech Republic
Conference papers
hal-04137689
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GenAPoPop1.0: Computing population genetic indices and inferring reproductive modes from genotype diversity in polyploid populations.Polyploidy and Biodiversity, Oct 2021, Rennes, France
Conference papers
hal-03810648
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GenAPoPop1.0: Computing population genetic indices and inferring reproductive modes from genotype diversity in polyploid populationsPolyploidy and Biodiversity, The International Research Network (IRN) Polyploidy and Biodiversity; The French « Plant Genome Dynamics » network (DYNAGEV), Oct 2021, Rennes (Campus de Beaulieu), France
Conference papers
hal-04459074
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Stochastic models help understanding the evolution of partially clonal species and inferring rate of clonality from genetic diversityThird Chile-France Academic Forum, CNRS; Universidad de Chile; Pontificia Universidad Católica de Chile; Universidad de Concepción, Sep 2021, Santiago de Chile, Chile
Conference papers
hal-04459158
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Genome Stabilization after Allopolyploidization in nascent Brassica napusPlant and Animal Genome Conference, Jan 2020, San Diego (California), United States
Conference papers
hal-04665576
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The dynamics of genetic diversity in partially clonal populationsThe American Genetic Association President’s Symposium: Sex and Asex: the genetics of complex life cycles, Jun 2019, Portland, United States
Conference papers
hal-02787623
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Effets des modes de reproduction sur la diversité génétique et implications pour les stratégies de conservation.3. Journées scientifiques GDR 3606 REPRO : ReproSciences 2019, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2019, Toulouse, France
Conference papers
hal-02787467
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Impact of structural variations on the meiotic stability and plant fertility of the allotetraploid B. napus (oilseed rape)Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France
Conference papers
hal-03318231
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Exemple de « vieilles » lignées asexuées chez les rouillesRéunion 2016 du groupe "champignons phytopathogènes", Nov 2016, Paris, France
Conference papers
hal-02795478
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Pollen dispersal in a self-incompatible species, the wild cherry (Prunus avium L.)Forest ecosystem genomics and adaptation, Jun 2010, San Lorenzo de El Escorial, Spain
Conference papers
hal-02751625
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Stratégies raisonnées d'échantillonnage pour capturer la diversité génétique et sa structuration dans les populations naturelles - Application aux mesures de gestion conservatoire.6. colloque national du BRG, Oct 2006, La Rochelle, France
Conference papers
hal-02757653
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Génotypage SNP : Protocole Hi-Plex2Genomics, May 2022, Orléans, France
Conference poster
hal-04146101
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ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two time stepsJacques Monod conference "Sex uncovered: the evolutionary biology of reproductive systems", Apr 2018, Roscoff, France
Conference poster
hal-03336667
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Etude d’un système de reproduction combinant auto-incompatibilité gamétophytique et asexualitéEcologie 2010, Sep 2010, Montpellier, France. 251 p., 2010, Proceedings of Ecologie 2010, Colloque national d’écologie scientifique
Conference poster
hal-02757819
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Evolution of inbreeding depression in species combining self-incompatibility and partial asexual reproduction11. Congress of the European Society of Evolutionary Biology (ESEB), Aug 2007, Uppsala, Sweden. 2007
Conference poster
hal-02755474
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Supplementary Information for Reproductive modes in populations of late-acting self-incompatible and self-compatible polyploid Ludwigia grandiflora subsp. hexapetala in western EuropeOther publications hal-04687132 v1 |
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Genotyping measures and population genetic indices for assesing reproductive modes of polyploid Ludwigia grandiflora subsp. hexapetala in western EuropeOther publications hal-04687142 v1 |
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ClonEstiMate 1.012016
Other publications
hal-01608300
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Modèle de gestions différenciées de vergers à graines : le merisierQualification des variétés améliorées et des peuplements sélectionnés. Variabilité du régime de reproduction et stabilité génétique des variétés forestières. Rapport final, 2005, pp.22-34
Other publications
hal-02587613
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Impact de la propagation asexuée et du système d'auto-incompatibilité gamétophytique sur la structuration et l'évolution de la diversité génétique d'une essence forestière entomophile et disséminée, Prunus avium L.Life Sciences [q-bio]. ENGREF (AgroParisTech), 2006. English. ⟨NNT : 06ENGR0008⟩
Theses
pastel-00002599
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