SS

Solenn Stoeckel

62%
Libre accès
65
Documents
Affiliations actuelles
  • Institut de Génétique, Environnement et Protection des Plantes (IGEPP)
  • Dynamique et durabilité des écosystèmes : de la source à l’océan (DECOD)
Contact

Présentation


Compétences

population genetics population ecology population biology evolution stochastic models high-throughput computing numerical computation supervised machine learning

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Publications

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Approximate Bayesian Computation applied to time series of population genetic data disentangles rapid genetic changes and demographic variations in a pathogen population

Méline Saubin , Aurélien Tellier , Solenn Stoeckel , Axelle Andrieux , Fabien Halkett
Molecular Ecology, 2024, 33 (10), ⟨10.1111/mec.16965⟩
Article dans une revue hal-04122413 v1
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GenAPoPop 1.0 : A user‐friendly software to analyse genetic diversity and structure from partially clonal and selfed autopolyploid organisms

Solenn Stoeckel , Ronan Becheler , Ekaterina Bocharova , Dominique Barloy
Molecular Ecology Resources, 2024, 24 (1), ⟨10.1111/1755-0998.13886⟩
Article dans une revue hal-04265149 v1
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Neutral genetic structuring of pathogen populations during rapid adaptation

Méline Saubin , Solenn Stoeckel , Aurélien Tellier , Fabien Halkett
Journal of Heredity, In press, 116, pp.62-77. ⟨10.1093/jhered/esae036⟩
Article dans une revue hal-04792713 v1
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Reproductive modes in populations of late-acting self-incompatible and self-compatible polyploid Ludwigia grandiflora subsp. hexapetala in western Europe

Solenn Stoeckel , Ronan Becheler , Luis Portillo-Lemus , Marilyne Harang , Anne-Laure Besnard et al.
Peer Community Journal, 2024, 4, pp.e82. ⟨10.24072/pcjournal.458⟩
Article dans une revue hal-04687103 v1
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Improving sustainable crop protection using population genetics concepts

Méline Saubin , Clémentine Louet , Lydia Bousset , Frédéric Fabre , Pascal Frey et al.
Molecular Ecology, 2023, 32 (10), pp.2461-2471. ⟨10.1111/mec.16634⟩
Article dans une revue (article de synthèse) hal-03394837 v2

The reproductive system of the cryptogenic alga Chondria tumulosa (Florideophyceae) at Manawai, Papahānaumokuākea Marine National Monument

T Williams , Stacy A Krueger‐hadfield , Kristina M. Hill-Spanik , Randall K. Kosaki , Solenn Stoeckel et al.
Phycologia, 2023, Phycologia, ⟨10.1080/00318884.2023.2284074⟩
Article dans une revue hal-04423788 v1
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Tetrasporophytic bias coupled with heterozygote deficiency in Antarctic Plocamium sp. (Florideophyceae, Rhodophyta)

Sabrina Heiser , Charles D. Amsler , Solenn Stoeckel , James B. Mcclintock , Bill J. Baker et al.
Journal of Phycology, 2023, 59 (4), pp.681-697. ⟨10.1111/jpy.13339⟩
Article dans une revue hal-04167428 v1
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The advantage of sex: Reinserting fluctuating selection in the pluralist approach

Jean-Sébastien Pierre , Solenn Stoeckel , Eric Wajnberg
PLoS ONE, 2022, 17 (8), pp.1-15. ⟨10.1371/journal.pone.0272134⟩
Article dans une revue hal-03745020 v1
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Late-acting self-incompatible system, preferential allogamy and delayed selfing in the heteromorphic invasive populations of Ludwigia grandiflora subsp. hexapetala

Luis Octavio Portillo Lemus , Maryline Harang , Michel Bozec , Jacques Haury , Solenn Stoeckel et al.
Peer Community Journal, 2022, 2, pp.e23. ⟨10.24072/pcjournal.108⟩
Article dans une revue hal-03807717 v1
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Untangling structural factors driving genome stabilization in nascent Brassica napus allopolyploids

Julie Ferreira de Carvalho , Solenn Stoeckel , Frédérique Eber , Maryse Lodé-Taburel , Marie-Madeleine Gilet et al.
New Phytologist, 2021, 230 (5), pp.2072-2084. ⟨10.1111/nph.17308⟩
Article dans une revue hal-03227311 v1
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Self‐incompatibility limits sexual reproduction rather than environmental conditions in an invasive water primrose

Luis Portillo Lemus , Michel M. Bozec , Marilyne Harang , Julie Coudreuse , Jacques J. Haury et al.
Plant-Environment Interactions, 2021, 2 (2), pp.74-86. ⟨10.1002/pei3.10042⟩
Article dans une revue hal-03236068 v1

The Combined Effect of Haplodiplonty and Partial Clonality on Genotypic and Genetic Diversity in a Finite Mutating Population

Solenn Stoeckel , Sophie Arnaud-Haond , Stacy Krueger-Hadfield
Journal of Heredity, 2021, 112 (1), pp.78-91. ⟨10.1093/jhered/esaa062⟩
Article dans une revue hal-03236056 v1

The discernible and hidden effects of clonality on the genotypic and genetic states of populations: Improving our estimation of clonal rates

Solenn Stoeckel , Barbara Porro , Sophie Arnaud‐haond
Molecular Ecology Resources, 2021, 21 (4), pp.1068-1084. ⟨10.1111/1755-0998.13316⟩
Article dans une revue hal-03288922 v1

Exploring the Genetic Consequences of Clonality in Haplodiplontic Taxa

Stacy A Krueger-Hadfield , Marie-Laure Guillemin , Christophe Destombe , Myriam Valero , Solenn Stoeckel
Journal of Heredity, 2021, 112 (1), pp.92-107. ⟨10.1093/jhered/esaa063⟩
Article dans une revue hal-03229012 v1

New insights into the population genetics of partially clonal organisms: When seagrass data meet theoretical expectations

Sophie Arnaud‐haond , Solenn Stoeckel , Diane Bailleul
Molecular Ecology, 2020, 29 (17), pp.3248-3260. ⟨10.1111/mec.15532⟩
Article dans une revue hal-02937568 v1
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After a catastrophe, a little bit of sex is better than nothing: Genetic consequences of a major earthquake on asexual and sexual populations

Ronan Becheler , Marie-Laure Guillemin , Solenn Stoeckel , Stéphane Mauger , Alice Saunier et al.
Evolutionary Applications, 2020, 13 (8), pp.2086- 2100. ⟨10.1111/EVA.12967⟩
Article dans une revue hal-02550669 v1
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Hypomethylation of the aquatic invasive plant, Ludwigia grandiflora subsp. hexapetala mimics the adaptive transition into the terrestrial morphotype

Julien Genitoni , Danièle Vassaux , Alain Delaunay , Sylvie Citerne , Luis Portillo Lemus et al.
Physiologia Plantarum, 2020, 170 (2), pp.280-298. ⟨10.1111/ppl.13162⟩
Article dans une revue hal-02926395 v1

ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps

Ronan Becheler , Jean-Pierre Masson , Sophie Arnaud-Haond , Fabien Halkett , Stéphanie Mariette et al.
Molecular Ecology Resources, 2017, 17 (6), pp.e251-e267. ⟨10.1111/1755-0998.12698⟩
Article dans une revue hal-01608371 v1
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Hybridization between two cryptic filamentous brown seaweeds along the shore: analysing pre- and postzygotic barriers in populations of individuals with varying ploidy levels

Alejandro E. Montecinos , Marie-Laure Guillemin , Lucia Couceiro , Akira F. Peters , Solenn Stoeckel et al.
Molecular Ecology, 2017, 26 (13), pp.3497 - 3512. ⟨10.1111/mec.14098⟩
Article dans une revue hal-01552937 v1
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Effects of complex life cycles on genetic diversity: cyclical parthenogenesis

Romuald Rouger , Katja Reichel , Florent Malrieu , Jean-Pierre Masson , Solenn Stoeckel
Heredity, 2016, 117 (5), pp.336-347. ⟨10.1038/hdy.2016.52⟩
Article dans une revue hal-01462754 v1

RClone: a package to identify MultiLocus Clonal Lineages and handle clonal data sets in r .

Diane Bailleul , Solenn Stoeckel , Sophie Arnaud-Haond
Methods in Ecology and Evolution, 2016, 7 (8), pp.966 - 970. ⟨10.1111/2041-210X.12550⟩
Article dans une revue hal-01926159 v1
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Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organisms.

Katja Reichel , Jean-Pierre Masson , Florent Malrieu , Sophie Arnaud-Haond , Solenn Stoeckel
BMC Genetics, 2016, 17 (1), pp.76. ⟨10.1186/s12863-016-0388-z⟩
Article dans une revue hal-01345820 v1
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Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics.

Katja Reichel , Valentin Bahier , Cédric Midoux , Nicolas Parisey , Jean-Pierre Masson et al.
Algorithms for Molecular Biology, 2015, 10 (1), pp.31. ⟨10.1186/s13015-015-0061-5⟩
Article dans une revue hal-01286505 v1

Longitudinal clines in the frequency distribution of 'super-clones' in an aphid crop pest

Aude Gilabert , Charles-Antoine Dedryver , Solenn Stoeckel , Manuel Plantegenest , Jean-Christophe Simon
Bulletin of Entomological Research, 2015, 105 (6), pp.694-703. ⟨10.1017/S0007485315000619⟩
Article dans une revue hal-01462722 v1
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The Exact Distributions of F-IS under Partial Asexuality in Small Finite Populations with Mutation

Solenn Stoeckel , Jean-Pierre Masson
PLoS ONE, 2014, 9 (1), pp.e85228. ⟨10.1371/journal.pone.0085228⟩
Article dans une revue hal-01208758 v1

Interpreting realized pollen flow in terms of pollinator travel paths and land-use resistance in heterogeneous landscapes

Tonya Allen Lander , Etienne K. Klein , Solenn Stoeckel , Stéphanie Mariette , Brigitte Musch et al.
Landscape Ecology, 2013, 28 (9), pp.1769-1783. ⟨10.1007/s10980-013-9920-y⟩
Article dans une revue istex hal-01208674 v1

Polymorphism pattern at a miniature inverted-repeat transposable element locus downstream of the domestication gene Teosinte-branched1 in wild and domesticated pearl millet

Y. Y. Dussert , M. -S. M. -S. Remigereau , M. C. Fontaine , A. A. Snirc , G. G. Lakis et al.
Molecular Ecology, 2013, 22 (2), pp.327 - 340. ⟨10.1111/mec.12139⟩
Article dans une revue istex hal-00964405 v1
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Masculinization of the X Chromosome in the Pea Aphid

Julie Jaquiéry , Claude Rispe , Denis Roze , Fabrice Legeai , Gaël Le Trionnaire et al.
PLoS Genetics, 2013, 9 (8), pp.e1003690. ⟨10.1371/journal.pgen.1003690⟩
Article dans une revue hal-00916967 v1

Accelerated evolution of sex chromosomes in aphids, an X0 system.

Julie Jaquiéry , Solenn Stoeckel , Claude Rispe , Lucie Mieuzet , Fabrice Legeai et al.
Molecular Biology and Evolution, 2012, 29 (2), epub ahead of print. ⟨10.1093/molbev/msr252⟩
Article dans une revue hal-00639983 v1
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Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex.

Julie Jaquiéry , Solenn Stoeckel , P. Nouhaud , L. Mieuzet , F. Mahéo et al.
Molecular Ecology, 2012, 21 (21), pp.5251-64. ⟨10.1111/mec.12048⟩
Article dans une revue istex hal-00753439 v1

Microevolution of s-allele frequencies in wild cherry populations: respective impacts of negative frequency dependent selection and genetic drift

Solenn Stoeckel , E. Klein , S. Oddou Muratorio , Brigitte Musch , S. Mariette
Evolution - International Journal of Organic Evolution, 2012, 66 (2), pp.486-504. ⟨10.1111/j.1558-5646.2011.01457.x⟩
Article dans une revue istex hal-02598247 v1
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Genetic diversity and fitness in small populations of partially asexual, self-incompatible plants.

Miguel Navascués , Solenn Stoeckel , Stéphanie Mariette
Heredity, 2010, 104 (5), pp.482-92. ⟨10.1038/hdy.2009.159⟩
Article dans une revue hal-00505867 v2

Genetic signature of amphimixis allows for the detection and fine scale localization of sexual reproduction events in a mainly parthenogenetic nematode

Laure Villate , Daniel Esmenjaud , Maarten van Helden , Solenn Stoeckel , Olivier Plantard
Molecular Ecology, 2010, 19 (5), pp.856-873. ⟨10.1111/j.1365-294X.2009.04511.x⟩
Article dans une revue istex hal-02668661 v1

Evolutionary and functional insights into reproductive strategies of aphids

Jean-Christophe Simon , Solenn Stoeckel , Denis Tagu
Comptes Rendus Biologies, 2010, 333 (6-7), pp.488-496. ⟨10.1016/j.crvi.2010.03.003⟩
Article dans une revue istex hal-02661743 v1

Climate and agricultural context shape reproductive mode variation in an aphid crop pest.

A. Gilabert , Jean-Christophe Simon , L. Mieuzet , F. Halkett , Solenn Stoeckel et al.
Molecular Ecology, 2009, 18 (14), pp.3050-61. ⟨10.1111/j.1365-294X.2009.04250.x⟩
Article dans une revue istex hal-00729971 v1

Unequal allelic frequencies at the self-incompatibility locus within local populations of Prunus avium L.: an effect of population structure?

Solenn Stoeckel , Vincent Castric , S. Mariette , Xavier Vekemans
Journal of Evolutionary Biology, 2008, 21 (3), pp.889-899. ⟨10.1111/j.1420-9101.2008.01504.x⟩
Article dans une revue hal-02590626 v1

Host range expansion of an introduced insect pest through multiple colonizations of specialized clones.

J. Peccoud , C.C. Figueroa , A.X. Silva , C.C. Ramirez , L. Mieuzet et al.
Molecular Ecology, 2008, 17 (21), pp.4608-18. ⟨10.1111/j.1365-294X.2008.03949.x⟩
Article dans une revue hal-00729150 v1

Heterozygote excess in a self-incompatible and partially clonal forest tree species Prunus avium L.

Solenn Stoeckel , Jean-Louis Grange , J.F. Fernandez Manjarres , Isabelle Bilger , Nathalie Frascaria-Lacoste et al.
Molecular Ecology, 2006, 15 (8), pp.2109-2118. ⟨10.1111/j.1365-294X.2006.02926.x⟩
Article dans une revue istex hal-02588089 v1
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Parental participation in progeny and effective population sizes in experimental seed orchards of wild cherry Prunus avium L. (Batsch)

Stéphanie Mariette , Emilie Balsemin , Solenn Stoeckel , Muriel Tavaud , Hervé Le Bouler et al.
Annals of Forest Science, 2006, 64 (5), pp.533-539. ⟨10.1051/forest:2007030⟩
Article dans une revue hal-02658137 v1

The Durance River valley: a great ecological system to study dispersal

Fabien Halkett , Méline Saubin , Constance Xhaard , Ronan Becheler , Solenn Stoeckel et al.
Journée thématique du LabEx ARBRE "Maladies forestières et changements globaux", Mireia Gomez-Gallego, Jun 2023, Champenoux, France, France
Communication dans un congrès hal-04125869 v1

Temporal genetic signatures of rapid demographic changes caused by directional selection, the case of a pathogen population overcoming plant resistance

Méline Saubin , Solenn Stoeckel , Aurélien Tellier , Fabien Halkett
Petit Pois Déridé 2022; 40ème réunion du Groupe d'Étude de Biologie et Génétique des Populations, May 2022, Lille, France
Communication dans un congrès hal-04137858 v1

Genetic signatures of a range expansion in natura: how clones play leapfrog?

Méline Saubin , Ronan Becheler , Jérôme Coville , Lucie Develay , Bénédicte Fabre et al.
Congress of the European Society for Evolutionary Biology, Lukáš Kratochvíl, Aug 2022, Prague, Czech Republic
Communication dans un congrès hal-04137682 v1

Demographic and genetic consequences of a rapid adaptation event in the poplar rust pathogen

Méline Saubin , Solenn Stoeckel , Aurélien Tellier , Fabien Halkett
2ème Réunion du Réseau E3GP3, Nov 2022, Paris, France
Communication dans un congrès hal-04137651 v1

Demographic and genomic consequences of a rapid adaptation event in the poplar rust pathogen

Méline Saubin , Clémentine Louet , Solenn Stoeckel , Fabien Halkett , Aurélien Tellier
Congress of the European Society for Evolutionary Biology, Lukáš Kratochvíl, Aug 2022, Prague, Czech Republic
Communication dans un congrès hal-04137689 v1

Temporal genetic signatures of rapid demographic changes caused by directional selection, the case of a pathogen population overcoming plant resistance

Méline Saubin , Solenn Stoeckel , Aurélien Tellier , Fabien Halkett
Séminaire MEE (Modélisation en écologie et évolution), May 2022, Montpellier, France
Communication dans un congrès hal-04137877 v1
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GenAPoPop1.0: Computing population genetic indices and inferring reproductive modes from genotype diversity in polyploid populations.

Solenn Stoeckel , Ekaterina Bocharova , Dominique D. Barloy
Polyploidy and Biodiversity, Oct 2021, Rennes, France
Communication dans un congrès hal-03810648 v1

GenAPoPop1.0: Computing population genetic indices and inferring reproductive modes from genotype diversity in polyploid populations

Solenn Stoeckel , Ekaterina Bocharova , Dominique D. Barloy
Polyploidy and Biodiversity, The International Research Network (IRN) Polyploidy and Biodiversity; The French « Plant Genome Dynamics » network (DYNAGEV), Oct 2021, Rennes (Campus de Beaulieu), France
Communication dans un congrès hal-04459074 v1

Stochastic models help understanding the evolution of partially clonal species and inferring rate of clonality from genetic diversity

Solenn Stoeckel
Third Chile-France Academic Forum, CNRS; Universidad de Chile; Pontificia Universidad Católica de Chile; Universidad de Concepción, Sep 2021, Santiago de Chile, Chile
Communication dans un congrès hal-04459158 v1

Genome Stabilization after Allopolyploidization in nascent Brassica napus

Julie Ferreira de Carvalho , Solenn Stoeckel , Frédérique Eber , Maryse Lodé-Taburel , Marie- Madeleine Gilet et al.
Plant and Animal Genome Conference, Jan 2020, San Diego (California), United States
Communication dans un congrès hal-04665576 v1

The dynamics of genetic diversity in partially clonal populations

Solenn Stoeckel
The American Genetic Association President’s Symposium: Sex and Asex: the genetics of complex life cycles, Jun 2019, Portland, United States
Communication dans un congrès hal-02787623 v1

Effets des modes de reproduction sur la diversité génétique et implications pour les stratégies de conservation.

Solenn Stoeckel
3. Journées scientifiques GDR 3606 REPRO : ReproSciences 2019, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2019, Toulouse, France
Communication dans un congrès hal-02787467 v1

Impact of structural variations on the meiotic stability and plant fertility of the allotetraploid B. napus (oilseed rape)

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , Solenn Stoeckel , Jérôme Morice , Marie-Madeleine Gilet et al.
Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France
Communication dans un congrès hal-03318231 v1

Exemple de « vieilles » lignées asexuées chez les rouilles

Ronan Becheler , Henriette Goyeau , Solenn Stoeckel , Fabien Halkett
Réunion 2016 du groupe "champignons phytopathogènes", Nov 2016, Paris, France
Communication dans un congrès hal-02795478 v1
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Pollen dispersal in a self-incompatible species, the wild cherry (Prunus avium L.)

Solenn Stoeckel , Etienne K. Klein , Sylvie Oddou-Muratorio , Stéphanie Mariette
Forest ecosystem genomics and adaptation, Jun 2010, San Lorenzo de El Escorial, Spain
Communication dans un congrès hal-02751625 v1
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Stratégies raisonnées d'échantillonnage pour capturer la diversité génétique et sa structuration dans les populations naturelles - Application aux mesures de gestion conservatoire.

Stéphanie Brachet , Catherine Bastien , Isabelle Bilger , Corinne Buret , Jean Dufour et al.
6. colloque national du BRG, Oct 2006, La Rochelle, France
Communication dans un congrès hal-02757653 v1
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Génotypage SNP : Protocole Hi-Plex2

Anne-Laure Besnard , Gilles Lassalle , Sophie Michon-Coudouel , Solenn Stoeckel , Eric J. Petit
Genomics, May 2022, Orléans, France
Poster de conférence hal-04146101 v1

ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two time steps

Ronan Becheler , Jean-Pierre Masson , Sophie Arnaud-Haond , Fabien Halkett , Stéphanie Mariette et al.
Jacques Monod conference "Sex uncovered: the evolutionary biology of reproductive systems", Apr 2018, Roscoff, France
Poster de conférence hal-03336667 v1
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Etude d’un système de reproduction combinant auto-incompatibilité gamétophytique et asexualité

Miguel Navascués , Solenn Stoeckel , Stéphanie Mariette
Ecologie 2010, Sep 2010, Montpellier, France. 251 p., 2010, Proceedings of Ecologie 2010, Colloque national d’écologie scientifique
Poster de conférence hal-02757819 v1
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Evolution of inbreeding depression in species combining self-incompatibility and partial asexual reproduction

Miguel Navascués , Solenn Stoeckel , Stéphanie Mariette
11. Congress of the European Society of Evolutionary Biology (ESEB), Aug 2007, Uppsala, Sweden. 2007
Poster de conférence hal-02755474 v1