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Sophie Ayciriex

Maître de conférences HDR
57
Documents

Publications

ZENO ToF 7600 system (Sciex) - Application en Lipidomique

Sophie Ayciriex
10 ans des journées du Réseau des LipidomYstes, Réseau des LipidomYstes, Nov 2022, saint jean de cap ferrat, France
Communication dans un congrès hal-03999968v1

Scout triggered MRM (stMRM) for robust and exhaustive targeted MS: application to small molecules

Thomas Alexandre Brunet , Arnaud Salvador , Sophie Ayciriex
Webinaire SCIEX, SCIEX, Sep 2022, VILLEURBANNE, France
Communication dans un congrès hal-03995883v1

Développement de méthodologies analytiques pour la multi-omique : Application à la caractérisation du cycle de reproduction chez un amphipode d’eau douce Gammarus fossarum

Sophie Ayciriex
Journée scientifique FPS SFSM RFMF, Quels outils pour la multi-omics ?, Jul 2022, Paris, France
Communication dans un congrès hal-03728801v1

Lipidomics and metabolomics multiplexed assay based on the innovative scout triggered MRM (stMRM) targeted MS mode

Sophie Ayciriex
18th International Conference of the Metabolomics Society, Metabolomics Society, Jun 2022, Valencia, Spain
Communication dans un congrès hal-03728758v1

Les méthodes de quantification par spectrométrie de masse

Sophie Ayciriex
25èmes rencontres RCJSM 2021- Ecole de Printemps, CJSM, Mar 2021, Visio, France
Communication dans un congrès hal-03996567v1

Mass spectrometry imaging of freshwater sentinel species Gammarus fossarum for ecotoxicological investigations

Tingting Fu , Sophie Ayciriex
10ème édition de la réunion des utilisateurs Francophone ToF-SIMS / ION TOF, Mar 2021, Paris, France
Communication dans un congrès hal-03996563v1

Mass spectrometry imaging of freshwater sentinel species G. fossarum for ecotoxicological investigations

Sophie Ayciriex
Forum Labo, Oct 2021, Paris ( France), France
Communication dans un congrès hal-03996559v1

Spatially resolved lipid profiling of crustacean G. fossarum to provide molecular understanding of the toxicity of pharmaceutical residue pravastatin

Tingting Fu , Nicolas Elie , David Touboul , Olivier Geffard , Arnaud Chaumot
24h IMSI, Nov 2020, Virtual congress, Germany
Communication dans un congrès hal-03996557v1

Spatially resolved lipidome profiling of freshwater sentinel species Gammarus fossarum by shotgun lipidomics and mass spectrometry imaging

Tingting Fu , Oskar Knittelfelder , Olivier Geffard , Arnaud Chaumot , Davide Degli Esposti
SETAC Europe 30th Annual Meeting, May 2020, Dublin, Ireland
Communication dans un congrès hal-02550464v1

Spatially resolved lipidome profiling of freshwater sentinel species Gammarus fossarum by shotgun lipidomics and mass spectrometry imaging

Tingting Fu , Oskar Knittelfelder , Nicolas Elie , David Touboul , Olivier Geffard
8TH EUROPEAN LIPIDOMICS Meeting, International Lipidomics Society, Sep 2020, Regensburg (virtual), Germany
Communication dans un congrès hal-03996551v1

Traitement des données brutes de la spectrométrie de masse - infusion directe. Application à la lipidomique

Sophie Ayciriex
Le Numérique pour la Chimie Analytique, Nov 2019, Paris, France
Communication dans un congrès hal-02472347v1

Approches multi-omiques pour la compréhension des mécanismes de toxicité en lien avec l’altération du métabolisme lipidique chez l’espèce sentinelle Gammarus fossarum

Sophie Ayciriex
Journée GDR Endocrinologie, 2018, Villeurbanne, France
Communication dans un congrès hal-02519660v1

Principe, intérêts et difficultés en Lipidomique globale

Sophie Ayciriex
8èmes journées du réseau des lipidomystes, réseau des lipidomystes, Oct 2018, Villeurbanne, France
Communication dans un congrès hal-01911384v1

Characterization of the virulome of Staphylococcus aureus by a highly multiplex approach with Scout-MRM

Nicolas Mouton , Marianne Pivard , Romain Carrière , Sophie Ayciriex , Florence Couzon
European Mass Spectrometry Conference (EMSC) - 35th SFSM and 51st DGMS joint annual mass spectrometry conferences, Mar 2018, Saarbrücken, Germany
Communication dans un congrès hal-01861538v1

Characterization of the Virulome of Staphylococcus Aureus by a Highly Multiplex Approach with Scout-MRM

Nicolas Mouton , Marianne Pivard , Romain Carrière , Sophie Ayciriex , Florence Couzon
Clinical Mass Spectrometry MSACL 2018 EU, Sep 2018, Salzburg, Austria
Communication dans un congrès hal-01866344v1
Image document

Mlg1, a yeast acyltransferase located in ER membranes associated with mitochondria ( MAMs ), is involved in de novo synthesis and remodelling of phospholipids

Patricia Laquel , Sophie Ayciriex , François Doignon , Nadine Camougrand , Louise Fougère
FEBS Journal, In press, ⟨10.1111/febs.17068⟩
Article dans une revue hal-04431763v1

Comprehensive bile acid pool analysis during ex-vivo liver perfusion in a porcine model of ischemia-reperfusion injury

Guillaume Rossignol , Xavier Muller , Thomas Alexandre Brunet , Valeska Bidault , Valerie Hervieu
Scientific Reports, 2024, 14 (1), pp.2384. ⟨10.1038/s41598-024-52504-7⟩
Article dans une revue hal-04425302v1

Electron-activated dissociation (EAD) for the complementary annotation of metabolites and lipids through data-dependent acquisition analysis and feature-based molecular networking, applied to the sentinel amphipod Gammarus fossarum

Valentina Calabrese , Thomas Alexandre Brunet , Davide Degli-Esposti , Arnaud Chaumot , Olivier Geffard
Analytical and Bioanalytical Chemistry, 2024, ⟨10.1007/s00216-024-05232-w⟩
Article dans une revue hal-04507595v1

Lipidome Unsaturation Affects the Morphology and Proteome of the Drosophila Eye

Mukesh Kumar , Canan Has , Khanh Lam-Kamath , Sophie Ayciriex , Deepshe Dewett
Journal of Proteome Research, 2024, ⟨10.1021/acs.jproteome.3c00570⟩
Article dans une revue hal-04519027v1
Image document

Challenges and perspectives in MS-based omics approaches for ecotoxicology studies: An insight on Gammarids sentinel amphipods

Valentina Calabrese , Arnaud Salvador , Yohann Clément , Thomas Alexandre Brunet , Anabelle Espeyte
Frontiers in Analytical Science, 2023, 3, pp.1118494. ⟨10.3389/frans.2023.1118494⟩
Article dans une revue hal-03986050v1

Scout triggered multiple reaction monitoring mass spectrometry for the rapid transfer of large multiplexed targeted methods in metabolomics.

Thomas Alexandre Brunet , Sophie Ayciriex , Delphine Arquier , Jérôme Lemoine , Jérôme Randon
Journal of Chromatography B - Analytical Technologies in the Biomedical and Life Sciences, 2023, 1228, pp.123849. ⟨10.1016/j.jchromb.2023.123849⟩
Article dans une revue hal-04216213v1

Development of a multi-omics extraction method for ecotoxicology: investigation of the reproductive cycle of Gammarus fossarum

Julien Faugere , Thomas Alexandre Brunet , Yohann Clément , Anabelle Espeyte , Olivier Geffard
Talanta, 2023, 253, pp.123806. ⟨10.1016/j.talanta.2022.123806⟩
Article dans une revue hal-03773623v1
Image document

Ultraviolet exposure regulates skin metabolome based on the microbiome

Vijaykumar Patra , Natalie Bordag , Yohann Clément , Harald Köfeler , Jean-Francois Nicolas
Scientific Reports, 2023, 13 (1), pp.7207. ⟨10.1038/s41598-023-34073-3⟩
Article dans une revue hal-04091111v1
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Early detection of ureteropelvic junction obstruction in neonates with prenatal diagnosis of renal pelvis dilatation using 1H NMR urinary metabolomics

Aurélien Scalabre , Yohann Clément , Florence Guillière , Sophie Ayciriex , Ségolène Gaillard
Scientific Reports, 2022, 12 (1), pp.13406. ⟨10.1038/s41598-022-17664-4⟩
Article dans une revue hal-03745903v1

Meet up‐and‐coming analytical scientists – Sophie Ayciriex

Sophie Ayciriex
Analytical Science Advances, 2022, ⟨10.1002/ansa.202200043⟩
Article dans une revue hal-03893334v1

Vitamin A Deficiency Alters the Phototransduction Machinery and Distinct Non-Vision-Specific Pathways in the Drosophila Eye Proteome

Mukesh Kumar , Canan Has , Khanh Lam-Kamath , Sophie Ayciriex , Deepshe Dewett
Biomolecules, 2022, 12 (8), pp.1083. ⟨10.3390/biom12081083⟩
Article dans une revue hal-03751366v1

Biallelic variants in TAMM41 are associated with low muscle cardiolipin levels, leading to neonatal mitochondrial disease

Kyle Thompson , Lucas Bianchi , Francesca Rastelli , Florence Piron-Prunier , Sophie Ayciriex
Human Genetics and Genomics Advances, 2022, 3 (2), pp.100097. ⟨10.1016/j.xhgg.2022.100097⟩
Article dans une revue hal-03675447v1
Image document

Shotgun lipidomics and mass spectrometry imaging unveil diversity and dynamics in Gammarus fossarum lipid composition

Tingting Fu , Oskar Knittelfelder , Yohann Clément , Eric Testet , Nicolas Elie
iScience, 2021, 24 (2), pp.1-44. ⟨10.1016/j.isci.2021.102115⟩
Article dans une revue hal-03134038v1

Shotgun lipidomics and mass spectrometry imaging unveil diversity and dynamics in Gammarus fossarum lipid composition

Tingting Fu , Oskar Knittelfelder , Olivier Geffard , Yohann Clément , Eric Testet
iScience, 2021, 24 (2), pp.102115. ⟨10.1016/j.isci.2021.102115⟩
Article dans une revue hal-04427014v1
Image document

Scout-multiple reaction monitoring: A liquid chromatography tandem mass spectrometry approach for multi-residue pesticide analysis without time scheduling

Arnaud Salvador , Romain Carrière , Sophie Ayciriex , Christelle Margoum , Yves Leblanc
Journal of Chromatography A, 2020, 1621, pp.461046. ⟨10.1016/j.chroma.2020.461046⟩
Article dans une revue hal-02771252v1
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Neuronal Ablation of CoA Synthase Causes Motor Deficits, Iron Dyshomeostasis, and Mitochondrial Dysfunctions in a CoPAN Mouse Model

Ivano Di Meo , Chiara Cavestro , Silvia Pedretti , Tingting Fu , Simona Ligorio
International Journal of Molecular Sciences, 2020, 21 (24), pp.9707. ⟨10.3390/ijms21249707⟩
Article dans une revue hal-03116877v1

In situ isobaric lipid mapping by MALDI-ion mobility separation-mass spectrometry imaging

Tingting Fu , Janina Oetjen , Manuel Chapelle , Alexandre Verdu , Matthias Szesny
Journal of Mass Spectrometry, 2020, 55 (9), pp.e4531. ⟨10.1002/jms.4531⟩
Article dans une revue hal-03113280v1
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High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics

Julien Faugere , Duarte Gouveia , Sophie Ayciriex , Arnaud Chaumot , Christine Almunia
Journal of Proteomics, 2020, 226, ⟨10.1016/j.jprot.2020.103901⟩
Article dans une revue hal-02903090v1

In situ isobaric lipid mapping by MALDI-ion mobility separation-mass spectrometry imaging

Tingting Fu , Janina Oetjen , Manuel Chapelle , Alexandre Verdu , Matthias Szesny
Journal of Mass Spectrometry, 2020, 55 (9), pp.e4531. ⟨10.1002/jms.4531⟩
Article dans une revue hal-03740080v1

Streamlined Development of Targeted Mass Spectrometry‐Based Method Combining Scout‐MRM and a Web‐Based Tool Indexed with Scout Peptides

Sophie Ayciriex , Romain Carrière , Chloé Bardet , Yves J. C. Le Blanc , Arnaud Salvador
Proteomics, 2020, pp.1900254. ⟨10.1002/pmic.201900254⟩
Article dans une revue hal-02436928v1
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On-Line Solid Phase Extraction Liquid Chromatography-Mass Spectrometry Method for Multiplexed Proteins Quantitation in an Ecotoxicology Test Specie: Gammarus fossarum

Aurore Charnot , Duarte Gouveia , Sophie Ayciriex , Jérôme Lemoine , J. Armengaud
Journal of Applied Bioanalysis, 2018, 4 (3), pp.81-101. ⟨10.17145/jab.18.012⟩
Article dans une revue hal-01860702v1

Scout-MRM: Multiplexed Targeted Mass Spectrometry-Based Assay without Retention Time Scheduling Exemplified by Dickeya dadantii Proteomic Analysis during Plant Infection

Blandine Rougemont , Sebastien B Gallo , Sophie Ayciriex , Romain Carrière , Hubert Hondermarck
Analytical Chemistry, 2017, 89 (3), pp.1421-1426 ⟨10.1021/acs.analchem.6b03201⟩
Article dans une revue hal-01518912v1

Neuronal Cholesterol Accumulation Induced by Cyp46a1 Down-Regulation in Mouse Hippocampus Disrupts Brain Lipid Homeostasis

Sophie Ayciriex , Fathia Djelti , Sandro Alves , Anne Regazzetti , Mathieu Gaudin
Frontiers in Molecular Neuroscience, 2017, 10, ⟨10.3389/fnmol.2017.00211⟩
Article dans une revue hal-03220550v1

The lipidome associated with the gamma-secretase complex is required for its integrity and activity

Sophie Ayciriex , H. Gerber , M. Osuna , M. Chami , H. Stahlberg
Biochemical Journal, 2016, 473 (3), pp.321 - 334. ⟨10.1042/BJ20150448⟩
Article dans une revue hal-01779038v1

CYP46A1 inhibition, brain cholesterol accumulation and neurodegeneration pave the way for Alzheimer’s disease

Sophie Ayciriex , Fathia Djelti , Jérome Braudeau , Eloise Hudry , Marc Dhenain
Brain - A Journal of Neurology , 2015, 138 (8), pp.2383 - 2398. ⟨10.1093/brain/awv166⟩
Article dans une revue hal-01779044v1

Stimulation, Inhibition, or Stabilization of Na,K-ATPase Caused by Specific Lipid Interactions at Distinct Sites

Sophie Ayciriex , Michael Habeck , Haim Haviv , Adriana Katz , Einat Kapri-Pardes
Journal of Biological Chemistry, 2015, 290 (8), pp.4829 - 4842. ⟨10.1074/jbc.M114.611384⟩
Article dans une revue hal-01779047v1

Cholesterol 24-hydroxylase defect is implicated in memory impairments associated with Alzheimer-like Tau pathology

Sophie Ayciriex , Marie-Anne Burlot , Jérome Braudeau , Kristin Michaelsen-Preusse , Brigitte Potier
Human Molecular Genetics, 2015, 24 (21), pp.5965 - 5976. ⟨10.1093/hmg/ddv268⟩
Article dans une revue hal-01779042v1

Production of systemically circulating Hedgehog by the intestine couples nutrition to growth and development

Sophie Ayciriex , Jonathan Rodenfels , Oksana Lavrynenko , Julio Sampaio , Maria Carvalho
Genes and Development, 2014, 28 (23), pp.2636 - 2651. ⟨10.1101/gad.249763.114⟩
Article dans une revue hal-01779049v1

Ceramides and sphingomyelinases in senile plaques

Maï Panchal , Mathieu Gaudin , Adina Lazar , Elisa Salvati , Isabelle Rivals
Neurobiology of Disease, 2014, 65, pp.193-201. ⟨10.1016/j.nbd.2014.01.010⟩
Article dans une revue hal-03572624v1

Ultra performance liquid chromatography - mass spectrometry studies of formalin-induced alterations of human brain lipidome

Sophie Ayciriex , Mathieu Gaudin , Mai Panchal , Erwan Werner , Alain Brunelle
Journal of Mass Spectrometry, 2014, 49 (10), pp.1035 - 1042. ⟨10.1002/jms.3424⟩
Article dans une revue hal-01779050v1

Ceramides and sphingomyelinases in senile plaques

Sophie Ayciriex , Mai Panchal , Mathieu Gaudin , Adina Lazar , Elisa Salvati
Neurobiology of Disease, 2014, 65, pp.193 - 201. ⟨10.1016/j.nbd.2014.01.010⟩
Article dans une revue hal-01779051v1

A single run LC-MS/MS method for phospholipidomics

Sophie Ayciriex , Corinne Bure , Eric Testet , Jean-Marie Schmitter
Analytical and Bioanalytical Chemistry, 2013, 405 (1), pp.203 - 213. ⟨10.1007/s00216-012-6466-9⟩
Article dans une revue hal-01779053v1

YPR139c/LOA1 encodes a novel lysophosphatidic acid acyltransferase associated with lipid droplets and involved in TAG homeostasis

Sophie Ayciriex , Marina Le Guédard , Nadine Camougrand , Gisèle Velours , Mario Schoene
Molecular Biology of the Cell, 2012, 23 (2), pp.233-246. ⟨10.1091/mbc.E11-07-0650⟩
Article dans une revue hal-02110244v1