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Structural profiles of the full phagocyte NADPH oxidase unveiled by combining computational biology and experimental knowledge
Sana Aimeur
,
Burcu Aykac Fas
,
Xavier Serfaty
,
Hubert Santuz
,
Sophie Sacquin-Mora
et al.
Article dans une revue
hal-04834774
v1
|
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n P-Collabs: Investigating Counterion-Mediated Bridges in the Multiply Phosphorylated Tau-R2 Repeat
Jules Marien
,
Chantal Prévost
,
Sophie Sacquin-Mora
Article dans une revue
hal-04686071
v1
|
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Best Practices of Using AI-Based Models in Crystallography and Their Impact in Structural Biology
Marc Graille
,
Sophie Sacquin-Mora
,
Antoine Taly
Article dans une revue
hal-04130165
v1
|
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A Perspective on the prospective use of AI in protein structure prediction
Raphaelle Versini
,
Sujith Sritharan
,
Burcu Aykaç Fas
,
Thibault Tubiana
,
Sana Zineb Aimeur
et al.
Article dans une revue
hal-04306436
v1
|
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It Takes Tau to Tango: Investigating the Fuzzy Interaction between the R2-Repeat Domain and Tubulin C-Terminal Tails
Jules Marien
,
Chantal Prévost
,
Sophie Sacquin-Mora
Article dans une revue
hal-04177051
v1
|
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Editorial: In Celebration of Women in Science: Biological Modeling and Simulation
Burcu Aykac Fas
,
Sophie Sacquin-Mora
,
Elena Papaleo
Article dans une revue
(compte-rendu de lecture)
hal-04128274
v1
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Conformational and mechanical stability of the isolated large subunit of membrane-bound [NiFe]-hydrogenase from Cupriavidus necator
Jovan Dragelj
,
Chara Karafoulidi-Retsou
,
Sagie Katz
,
Oliver Lenz
,
Ingo Zebger
et al.
Article dans une revue
hal-03965156
v1
|
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Modeling the Dynamics of Protein–Protein Interfaces, How and Why?
Ezgi Karaca
,
Chantal Prevost
,
Sophie Sacquin-Mora
Article dans une revue
hal-03643994
v1
|
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Between two walls: Modeling the adsorption behavior of β-glucosidase A on bare and SAM-functionalised gold surfaces
Nicolas Bourassin
,
Florent Barbault
,
Marc Baaden
,
Sophie Sacquin-Mora
Article dans une revue
hal-03294641
v1
|
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Design – a new way to look at old molecules
Davide Spalvieri
,
Anne-Marine Mauviel
,
Matthieu Lambert
,
Nicolas Férey
,
Sophie Sacquin-Mora
et al.
Article dans une revue
hal-03793308
v1
|
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When Order Meets Disorder: Modeling and Function of the Protein Interface in Fuzzy Complexes
Sophie Sacquin-Mora
,
Chantal Prevost
Article dans une revue
hal-03389754
v1
|
|
Moving pictures: Reassessing docking experiments with a dynamic view of protein interfaces
Chantal Prevost
,
Sophie Sacquin-Mora
Proteins - Structure, Function and Bioinformatics, 2021, 89 (10), pp.1315-1323. ⟨10.1002/prot.26152⟩
Article dans une revue
hal-03065754
v1
|
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Protein interaction energy landscapes are shaped by functional and also non-functional partners
Hugo Schweke
,
Marie-Hélène Mucchielli
,
Sophie Sacquin-Mora
,
Wanying Bei
,
Anne Lopes
Article dans une revue
hal-02445555
v1
|
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Implicit Modeling of the Impact of Adsorption on Solid Surfaces for Protein Mechanics and Activity with a Coarse-Grain Representation
Nicolas Bourassin
,
Marc Baaden
,
Elisabeth Lojou
,
Sophie Sacquin-Mora
Article dans une revue
hal-02939019
v1
|
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Conformational Stability Adaptation of a Double-Stranded RNA-Binding Domain to Transfer RNA Ligand
Charles Bou-Nader
,
Ludovic Pecqueur
,
Pierre Barraud
,
Marc Fontecave
,
Carine Tisné
et al.
Article dans une revue
hal-04238753
v1
|
|
Coarse-grain simulations on NMR conformational ensembles highlight functional residues in proteins
Sophie Sacquin-Mora
Article dans une revue
hal-02307948
v1
|
|
Controlling Redox Enzyme Orientation at Planar Electrodes
Vivek Pratap Hitaishi
,
Romain Clément
,
Nicolas Bourassin
,
Marc Baaden
,
Anne de Poulpiquet
et al.
Article dans une revue
hal-01793660
v1
|
|
Hidden partners: Using cross-docking calculations to predict binding sites for proteins with multiple interactions
Nathalie Lagarde
,
Alessandra Carbone
,
Sophie Sacquin-Mora
Article dans une revue
hal-02104315
v1
|
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Mechanical variations in proteins with large-scale motions highlight the formation of structural locks
Sophie Sacquin-Mora
Article dans une revue
hal-02104314
v1
|
|
Meet-U: educating through research immersion
Nika Abdollahi
,
Alexandre Albani
,
Eric Anthony
,
Agnes Baud
,
Mélissa Cardon
et al.
Article dans une revue
hal-01722019
v1
|
|
Determinants of neuroglobin plasticity highlighted by joint coarse-grained simulations and high pressure crystallography.
Nathalie Colloc’h
,
Sophie Sacquin-Mora
,
Giovanna Avella
,
Anne-Claire Dhaussy
,
Thierry Prangé
et al.
Article dans une revue
hal-01523850
v1
|
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Mobility and core-protein binding patterns of disordered C-terminal tails in β-tubulin isotypes.
Yoann Laurin
,
Joël Eyer
,
Charles H. Robert
,
C Prévost
,
S. Sacquin-Mora
Article dans une revue
hal-01497972
v1
|
|
Great interactions: How binding incorrect partners can teach us about protein recognition and function
Lydie Vamparys
,
Benoist Laurent
,
Alessandra Carbone
,
Sophie Sacquin-Mora
Article dans une revue
hal-01347160
v1
|
|
Bridging Enzymatic Structure Function via Mechanics: A Coarse-Grain Approach
Sophie Sacquin-Mora
Article dans une revue
hal-01451158
v1
|
|
Investigating the Structural Variability and Binding Modes of the Glioma Targeting NFL-TBS.40-63 Peptide on Tubulin
Yoann Laurin
,
Philippe Savarin
,
Charles H Robert
,
Masayuki Takahashi
,
Joël Eyer
et al.
Article dans une revue
hal-01451181
v1
|
|
Fold and flexibility: what can proteins' mechanical properties tell us about their folding nucleus?
Sophie Sacquin-Mora
Article dans une revue
hal-01451165
v1
|
|
How binding incorrect partners can lead to the prediction of correct interfaces: Results from a massive cross-docking study on proteins
Sophie Sacquin-Mora
,
Lydie Vamparys
,
Alessandra Carbone
Protein Science, 2015, 24 (1, SI), pp.243-244
Article dans une revue
hal-01528524
v1
|
|
Docking Peptides on Proteins: How to Open a Lock, in the Dark, with a Flexible Key
Sophie Sacquin-Mora
,
Chantal Prévost
Article dans une revue
hal-01451174
v1
|
|
Assessing the effect of dynamics on the closed-loop protein-folding hypothesis
Sree V. Chintapalli
,
Christopher J. R. Illingworth
,
Graham J. G. Upton
,
Sophie Sacquin-Mora
,
Philip J. Reeves
et al.
Article dans une revue
hal-01498046
v1
|
|
Multiscale Simulations Give Insight into the Hydrogen in- and out-Pathways of [NiFe]-Hydrogenases from Aquifex Aeolicus and Desulfovibrio Fructosovorans.
Francesco Oteri
,
Marc Baaden
,
Elisabeth Lojou
,
Sophie Sacquin-Mora
Article dans une revue
hal-01084622
v1
|
|
Motions and mechanics: investigating conformational transitions in multi-domain proteins with coarse-grain simulations
Sophie Sacquin-Mora
Article dans une revue
hal-01498044
v1
|
|
The weak, fluctuating, dipole moment of membrane-bound hydrogenase from Aquifex aeolicus accounts for its adaptability to charged electrodes
Francesco Oteri
,
Alexandre Ciaccafava
,
Anne De Poulpiquet
,
Marc Baaden
,
Elisabeth. Lojou
et al.
Article dans une revue
hal-01493492
v1
|
|
Heme orientation modulates histidine dissociation and ligand binding kinetics in the hexacoordinated human neuroglobin.
Anthony Bocahut
,
Valérie Derrien
,
Sophie Bernad
,
Pierre Sebban
,
Sophie Sacquin-Mora
et al.
Article dans une revue
hal-00783539
v1
|
|
Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information
Anne Lopes
,
Sophie Sacquin-Mora
,
Viktoriya Dimitrova
,
Elodie Laine
,
Yann Ponty
et al.
Article dans une revue
hal-00875116
v1
|
|
Heme orientation modulates histidine dissociation and ligand binding kinetics in the hexacoordinated human neuroglobin
A Bocahut
,
V Derrien
,
S Bernad
,
P. Sebban
,
S Sacquin-Mora
et al.
Journal of Biological Inorganic Chemistry, 2013, 18 (1)
Article dans une revue
hal-01326196
v1
|
|
Thermal fluctuations of haemoglobin from different species: adaptation to temperature via conformational dynamics
A. M. Stadler
,
C. J. Garvey
,
A. Bocahut
,
S. Sacquin-Mora
,
I. Digel
et al.
Article dans une revue
hal-01498101
v1
|
|
Enzyme closure and nucleotide binding structurally lock guanylate kinase.
Olivier Delalande
,
Sophie Sacquin-Mora
,
Marc Baaden
Article dans une revue
hal-00645163
v1
|
|
Functional Modes and Residue Flexibility Control the Anisotropic Response of Guanylate Kinase to Mechanical Stress
Sophie Sacquin-Mora
,
Olivier Delalande
,
Marc Baaden
Article dans une revue
hal-00602505
v1
|
|
Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.
Stefan Engelen
,
Ladislas A. Trojan
,
Sophie Sacquin-Mora
,
Richard Lavery
,
Alessandra Carbone
Article dans une revue
inserm-00705756
v1
|
|
Probing macromolecular mechanics: Heterogeneity and function
(lavery Laveryr
,
(sacquin-Mora Sacquin-Moras
,
Xxxx Sophie)
JOURNAL OF BIOMOLECULAR STRUCTURE, 2007, xxx, pp.763-763
Article dans une revue
hal-00315127
v1
|
|
Protein mechanics: a route from structure to function.
R. Lavery
,
S. Sacquin-Mora
Journal of Biosciences, 2007, 32, pp.891-898
Article dans une revue
hal-00315141
v1
|
|
Investigating the local flexibility of functional residues in hemoproteins.
S. Sacquin-Mora
,
R. Lavery
Biophysical Journal, 2006, 90, pp.2706-2717
Article dans une revue
hal-00313391
v1
|