Sylvain Prigent

52
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Affiliations actuelles
  • Biologie du fruit et pathologie (BFP)
  • Plateforme Bordeaux Metabolome
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Publications

Publications

Interspecies predictions of growth traits from quantitative transcriptome data acquired during fruit development

Chloé Beaumont , Sylvain Prigent , Kentaro Mori , Pierre Baldet , Joana Jorly et al.
Journal of Experimental Botany, 2025, pp.eraf122. ⟨10.1093/jxb/eraf122⟩
Article dans une revue hal-05037526 v1
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Rhizochemistry and soil bacterial community are tailored to natural stress gradients.

Thomas Dussarrat , Claudio Latorre , Millena Barros Santos , Constanza Aguado-Norese , Sylvain Prigent et al.
Soil Biology and Biochemistry, 2025, 202, pp.109662. ⟨10.1016/j.soilbio.2024.109662⟩
Article dans une revue hal-04806040 v1
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Identification of metabolic and protein markers representative of the impact of mild nitrogen deficit on agronomic performance of maize hybrids

Maria Urrutia , Mélisande Blein-Nicolas , Olivier Fernandez , Stéphane Bernillon , Mickaël Maucourt et al.
Metabolomics, 2024, 20 (6), pp.128. ⟨10.1007/s11306-024-02186-z⟩
Article dans une revue hal-04799829 v1
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Multi-regulated GDP-l-galactose phosphorylase calls the tune in ascorbate biosynthesis

Pierre Baldet , Kentaro Mori , Sylvain Prigent , Guillaume Decros , Bertrand Beauvoit et al.
Journal of Experimental Botany, 2024, 75 (9), pp.2631-2643. ⟨10.1093/jxb/erae032/7607105⟩
Article dans une revue hal-04530669 v1

Ecological and metabolic implications of the nurse effect of Maihueniopsis camachoi in the Atacama Desert

Francisca Díaz , Thomas Dussarrat , Gabriela Carrasco-Puga , Sophie Colombie , Sylvain Prigent et al.
New Phytologist, 2024, 241 (3), pp.1074-1087. ⟨10.1111/nph.19415⟩
Article dans une revue hal-04514679 v1
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Enzyme‐based kinetic modelling of ASC–GSH cycle during tomato fruit development reveals the importance of reducing power and ROS availability

Guillaume Decros , Thomas Dussarrat , Pierre Baldet , Cédric Cassan , Cécile Cabasson et al.
New Phytologist, 2023, ⟨10.1111/nph.19160⟩
Article dans une revue hal-04178513 v1
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Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites

Annick Moing , Thierry Berton , Léa Roch , Salimata Diarrassouba , Stéphane Bernillon et al.
BMC Plant Biology, 2023, 23 (365), ⟨10.1186/s12870-023-04370-0⟩
Article dans une revue hal-04183193 v1
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Comparative constraint‐based modelling of fruit development across species highlights nitrogen metabolism in the growth‐defence trade‐off

Sophie Colombie , Sylvain Prigent , Cédric Cassan , Ghislaine Hilbert‐masson , Christel Renaud et al.
The Plant Journal, 2023, ⟨10.1111/tpj.16409⟩
Article dans une revue hal-04185814 v1
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Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience

Thomas Dussarrat , Sylvain Prigent , Claudio Latorre , Stéphane Bernillon , Amélie Flandin et al.
New Phytologist, 2022, 234 (5), pp.1614-1628. ⟨10.1111/nph.18095⟩
Article dans une revue hal-03626433 v1
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Identifying early metabolite markers of successful graft union formation in grapevine

Grégoire Loupit , Josep Valls Fonayet , Sylvain Prigent , Duyên Prodhomme , Anne-Sophie Spilmont et al.
Horticulture research, 2022, 9, pp.1-12. ⟨10.1093/hr/uhab070⟩
Article dans une revue hal-03677495 v1
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Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis

Maria Urrutia , Melisande Blein-Nicolas , Sylvain Prigent , Stéphane Bernillon , Catherine Deborde et al.
Plant, Cell and Environment, 2021, 44 (5), pp.1504-1521. ⟨10.1111/pce.13993⟩
Article dans une revue hal-03107184 v1

Overproduction of ascorbic acid impairs pollen fertility in tomato

Paul Deslous , Céline Bournonville , Guillaume Decros , Yoshihiro Okabe , Jean-Philippe Mauxion et al.
Journal of Experimental Botany, 2021, 72 (8), pp.3091-3107. ⟨10.1093/jxb/erab040⟩
Article dans une revue hal-03152478 v1
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Metabolomics to Exploit the Primed Immune System of Tomato Fruit.

Estrella Luna , Amélie Flandin , Cédric Cassan , Sylvain Prigent , Chloé Chevanne et al.
Metabolites, 2020, 10 (3), pp.96. ⟨10.3390/metabo10030096⟩
Article dans une revue hal-02629273 v1

Proton-NMR Metabolomics of Rainbow Trout Fed a Plant-Based Diet Supplemented with Graded Levels of a Protein-Rich Yeast Fraction Reveal Several Metabolic Processes Involved in Growth

Simon Roques , Catherine Deborde , Nadege Richard , Yann Marchand , Laurence Larroquet et al.
Journal of Nutrition, 2020, 150 (9), pp.2268-2277. ⟨10.1093/jn/nxaa206⟩
Article dans une revue hal-02927022 v1

Polyphenol profiles of just pruned grapevine canes from wild vitis accessions and vitis vinifera cultivars

Grégoire Loupit , Sylvain Prigent , Céline Franc , Gilles de Revel , Tristan Richard et al.
Journal of Agricultural and Food Chemistry, 2020, 68 (47), pp.13397-13407. ⟨10.1021/acs.jafc.9b08099⟩
Article dans une revue hal-02565126 v1
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Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species

Léa Roch , Sylvain Prigent , Holger Klose , Coffi-Belmys Cakpo , Bertrand Beauvoit et al.
Journal of Experimental Botany, 2020, 71 (19), pp.5823-5836. ⟨10.1093/jxb/eraa302⟩
Article dans une revue hal-02904041 v1
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Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi.

Jens Christian Nielsen , Sylvain Prigent , Sietske Grijseels , Mhairi Workman , Boyang Ji et al.
mSystems, 2019, 4 (2), pp.e00012-19. ⟨10.1128/mSystems.00012-19⟩
Article dans une revue hal-02622105 v1

Genome-scale model of Rhodotorula toruloides metabolism.

Ievgeniia A Tiukova , Sylvain Prigent , Jens Nielsen , Mats Sandgren , Eduard J Kerkhoven
Biotechnology and Bioengineering, 2019, 116 (12), pp.3396-3408. ⟨10.1002/bit.27162⟩
Article dans une revue hal-02624789 v1

Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs)

G. Othoum , Sylvain Prigent , A. Derouiche , L. Shi , A. Bokhari et al.
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-55726-2⟩
Article dans une revue hal-02937645 v1
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Regulation of Pyridine Nucleotide Metabolism During Tomato Fruit Development Through Transcript and Protein Profiling.

Guillaume Decros , Bertrand Beauvoit , Sophie Colombie , Cecile Cabasson , Stéphane Bernillon et al.
Frontiers in Plant Science, 2019, 10, pp.1201. ⟨10.3389/fpls.2019.01201⟩
Article dans une revue hal-02620533 v1

Modeling Protein Destiny in Developing Fruit

Isma Belouah , Christine Nazaret , Pierre Pétriacq , Sylvain Prigent , Camille Bénard et al.
Plant Physiology, 2019, 180 (3), pp.1709-1724. ⟨10.1104/pp.19.00086⟩
Article dans une revue hal-02327302 v1

Reconstruction of 24 Penicillium genome-scale metabolic models shows diversity based on their secondary metabolism

Sylvain Prigent , Jens C. Nielsen , Jens C. Frisvad , Jens Nielsen
Biotechnology and Bioengineering, 2018, 115 (10), pp.2604-2612. ⟨10.1002/bit.26739⟩
Article dans une revue hal-02620062 v1
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Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

Sylvain Prigent , Clémence Frioux , Simon M Dittami , Sven Thiele , Abdelhalim Larhlimi et al.
PLoS Computational Biology, 2017, 13 (1), pp.32. ⟨10.1371/journal.pcbi.1005276⟩
Article dans une revue hal-01449100 v1

Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species

Jens Christian Nielsen , Sietske Grijseels , Sylvain Prigent , Boyang Ji , Jacques Dainat et al.
Nature Microbiology, 2017, 2, pp.17044. ⟨10.1038/nmicrobiol.2017.44⟩
Article dans une revue hal-02629382 v1

Unlocking the potential of fungi: the QuantFung project

Zsofia Buttel , Rafael Díaz , Benedict Dirnberger , Michal Flak , Sietske Grijseels et al.
Fungal Biology and Biotechnology, 2015, 2, pp.6. ⟨10.1186/s40694-015-0016-0⟩
Article dans une revue hal-02629700 v1

The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond.

Sylvain Prigent , Guillaume Collet , Simon M Dittami , Ludovic Delage , Floriane Ethis de Corny et al.
The Plant Journal, 2014, 80 (2), pp.367-381. ⟨10.1111/tpj.12627⟩
Article dans une revue hal-01057153 v1
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Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment.

Thierry Tonon , Damien Eveillard , Sylvain Prigent , Jérémie Bourdon , Philippe Potin et al.
OMICS, 2011, 15 (12), pp.883-892. ⟨10.1089/omi.2011.0089⟩
Article dans une revue hal-00661751 v1

Model of cap-dependent translation initiation in sea urchin: a step towards the eukaryotic translation regulation network.

Robert Bellé , Sylvain Prigent , Anne Siegel , Patrick Cormier
Molecular Reproduction and Development, 2010, 77 (3), pp.257-64. ⟨10.1002/mrd.21142⟩
Article dans une revue istex hal-00486418 v1

Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth- defence trade-off

Beaumont Chloé , Cassan Cédric , Sylvain Prigent , Hilbert-Masson Ghislaine , Renaud Christel et al.
JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France
Communication dans un congrès hal-04677435 v1

Modeling the effect of biostimulants on horticultural crop performance, Poinsettia: an approach combining non-target plant analysis methods and data science

Nicolas Guibert , Sylvain Prigent , Pierre Pétriacq , Jean-Marc Deogratias , Cecile Cabasson
European Horticulture Congress, International Society for Horticultural Science, May 2024, Bucarest (Roumanie), Romania
Communication dans un congrès hal-04677528 v1

Metabolomic Insights into Wine's Sensory Identity: Unveiling Climate-Driven Changes in Aroma Composition

Jacqueline O Santos , Alexia Baïri , Agnès Destrac-Irvine , Maria-Das-Dores Lafargue , Eric Gomès et al.
II International Congress on Grapevine and Wine Sciences (2ICGWS), Dec 2023, Logroño, Spain
Communication dans un congrès hal-04344237 v1

Combining phenotypic, metabolome and proteome data to study maize response to a mild nitrogen deficit

Maria Urrutia , Melisande Blein-Nicolas , Olivier Fernandez , Stéphane Bernillon , Mickael Maucourt et al.
Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France
Communication dans un congrès hal-03878405 v1

Using metabolomic data to predict Maize yield

Sylvain Prigent , Olivier Fernandez , Stéphane Bernillon , Pierre Pétriacq , Annick Moing et al.
JOBIM 2019, Jul 2019, Nantes, France. pp.151
Communication dans un congrès hal-02565229 v1

Extending the Metabolic Network of <em>Ectocarpus Siliculosus</em> Using Answer Set Programming

Guillaume Collet , Damien Eveillard , Martin Gebser , Sylvain Prigent , Torsten Schaub et al.
Communication dans un congrès istex hal-02745669 v1

Extending the Metabolic Network of Ectocarpus Siliculosus using Answer Set Programming

Guillaume Collet , Damien Eveillard , Martin Gebser , Sylvain Prigent , Torsten Schaub et al.
LPNMR - 12th Conference on Logic Programming and Nonmonotonic Reasoning - 2013, Sep 2013, Corunna, Spain
Communication dans un congrès hal-00853752 v1

Systems biology approaches at cellular level in the model organism Ectocarpus siliculosus to better understand brown algal physiology

Thierry Tonon , Patricia Bonin , Sylvain Prigent , Z. Shao , Agnès Groisillier et al.
Esil 2012: algal post-genomics, Apr 2012, Roscoff, France
Communication dans un congrès hal-00760640 v1
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Combination of metabolomics and machine learning to unravel environmental drivers of spatial heterogeneity of microbial metabolome assemblage in aquatic periphyton : The COMBO project

Amélie Malherbe , Mélissa Eon , Chloé Bonnineau , Sébastien Boutry , Sylvain Prigent et al.
Aquaecomics, Mar 2025, Thonon Les Bains, France. 2025
Poster de conférence hal-05029670 v1
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Generation of metabolomic-informed models of metabolism in complex microbial communities

Coralie Muller , Sylvain Prigent , Clémence Frioux
Journées scientifiques Agroécologie et Numérique 2025, Jan 2025, Dijon, France.
Poster de conférence hal-04919231 v1

Comparing the evolution of the main biomass compounds of Pinot Noir berries from several Climats de Bourgogne

Antoine Laporte , Cédric Cassan , Sylvain Prigent
JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France
Poster de conférence hal-04677412 v1

Unveiling the Impact of Biostimulant Application on Tomato Metabolism through a metabolomics strategy

Cathleen Mirande-Ney , Nicolas Guibert , Millena Cristina Barros Santos , Adam Rochepeau , Théo Poucet et al.
16ème journées scientifiques du RFMF, Jun 2024, Saint malo, France
Poster de conférence hal-04677506 v1
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Tutti frutti: Metabolomics Meets Machine Learning for Juicy Discoveries

Sylvain Prigent , Millena C. Barros Santos , Giovanni Melandri , Georges Randriafanomezantsoa Radohery , Cédric Cassan et al.
JOBIM 2024 - Journées ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France
Poster de conférence hal-04677398 v1

The UNTWIST project: Unraveling Stress Response Mechanisms in Camelina sativa for Enhanced Crop Resilience in European Agriculture

Malo Le Boulch , Cédric Cassan , Pierre Pétriacq , Yves Gibon , Sylvain Prigent
JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France
Poster de conférence hal-04677424 v1
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Using metabolomics and predictive metabolomic to study the physiology of an old rustic oilseed plant.

Malo Le Boulch , Millena C. Barros Santos , Susana Silvestre , Dominik Grosskinsky , Anaïs da Costa et al.
Metabolomics 2023, Jun 2023, Niagara falls, Canada
Poster de conférence hal-04396004 v1
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A project-scale map of metadata to improve future data management

Mélanie Pétéra , Cecile Cabasson , Blandine Comte , Christophe Duperier , Olivier Filangi et al.
Analytics 2022, Sep 2022, Nantes, France.
Poster de conférence hal-03776494 v1
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Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Melisande Blein-Nicolas , Annick Moing , Jorge Duarte , Stéphane Bernillon et al.
Analytics 2022, Sep 2022, Nantes, France.
Poster de conférence hal-03879730 v1
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Using machine-learning on metabolomics data to predict complex phenotypes

Sylvain Prigent , Yves Gibon
JOBIM2022, Jul 2022, Rennes, France
Poster de conférence hal-03760581 v1

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Mélisande Blein , Annick Moing , Jorge Duarte , Thierry Berton et al.
63rd Annual Maize Genetics Meeting, Mar 2021, Virtual, United States
Poster de conférence hal-03368764 v1

Leaf metabolite profiling reveals biochemical diversities within wheat genetic resources

Pierre Petriacq , Amélie Flandin , Sylvain Prigent , Stéphane Bernillon , Cédric Cassan et al.
15. Annual Conference of the Metabolomics Society (Metabolomics 2019), Jun 2019, La Hague, Netherlands. , pp.209-209, 2019, METABOLOMICS 2019, 15th Annual Conference of the Metabolomics Society, June 23-27, The Hague, Netherlands
Poster de conférence hal-02936725 v1
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MetaboHUB-Bordeaux

Stéphane Bernillon , Cecile Cabasson , Cédric Cassan , Grégory da Costa , Catherine Deborde et al.
Journées Scientifiques INRA-BAP, Sep 2019, Hyères, France. , 2019
Poster de conférence hal-02570809 v1

Plant metabolomics and breeding

Olivier Fernandez , Emilie Millet , Renaud Rincent , Sylvain Prigent , Pierre Pétriacq et al.
Elsevier. Plant Metabolomics in full swing, 98, 2021, Advances in Botanical Research, 978-0-12-821688-0. ⟨10.1016/bs.abr.2020.09.020⟩
Chapitre d'ouvrage hal-03150312 v1

Plant genome-scale metabolic networks

Léo Gerlin , Clément Frainay , Fabien Jourdan , Caroline Baroukh , Sylvain Prigent
Science Direct. Plant Metabolomics in full swing, 98, 2021, Advances in Botanical Research, ⟨10.1016/bs.abr.2020.09.021⟩
Chapitre d'ouvrage hal-03149497 v1