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Stéphane Le Crom

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Researcher identifiers
  • IdHAL stephane-le-crom
  • ResearcherId : P-4176-2016
  • ORCID 0000-0002-0534-7797
  • Google Scholar : https://scholar.google.com/citations?user=hKiE8QQAAAAJ&hl=fr
  • IdRef : 164734627
  • ResearcherId : http://www.researcherid.com/rid/P-4176-2016

Presentation

Publications

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Local Translation in Perisynaptic Astrocytic Processes Is Specific and Changes after Fear Conditioning

Noémie Mazaré , Marc Oudart , Julien Moulard , Giselle Cheung , Romain Tortuyaux
Cell Reports, 2020, 32, ⟨10.1016/j.celrep.2020.108076⟩
Journal articles hal-03013688v1

Meet-U: Educating through research immersion

Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon
PLoS Computational Biology, 2018, 14 (3), pp.e1005992. ⟨10.1371/journal.pcbi.1005992⟩
Journal articles hal-04011118v1
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A de novo approach to disentangle partner identity and function in holobiont systems

Arnaud Meng , Camille Marchet , Erwan Corre , Pierre Peterlongo , Adriana A. Alberti
Microbiome, 2018, pp.1-35. ⟨10.1186/s40168-018-0481-9⟩
Journal articles hal-01643153v2
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Connexin 43 Controls the Astrocyte Immunoregulatory Phenotype

Anne-Cécile Boulay , Alice Gilbert , Vanessa Oliveira Moreira , Corinne Blugeon , Sandrine Perrin
Brain Sciences, 2018, 8 (4), ⟨10.3390/brainsci8040050⟩
Journal articles hal-02879306v1
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Meet-U: educating through research immersion

Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon
PLoS Computational Biology, 2018, 14 (3), pp.1-10. ⟨10.1371/journal.pcbi.1005992⟩
Journal articles hal-01722019v1
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Comparative Transcriptomics Highlights New Features of the Iron Starvation Response in the Human Pathogen Candida glabrata

Médine Benchouaia , Hugues Ripoche , Mariam Sissoko , Antonin Thiebaut , Jawad Merhej
Frontiers in Microbiology, 2018, 9, pp.2689. ⟨10.3389/fmicb.2018.02689⟩
Journal articles hal-01944268v1
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Increased Fatty Acid Oxidation in Differentiated Proximal Tubular Cells Surviving a Reversible Episode of Acute Kidney Injury

Aurélien Bataille , Pierre Galichon , Nadjim Chelghoum , Badreddine Mohand Oumoussa , Marie-Julia Ziliotis
Cellular Physiology and Biochemistry, 2018, 47 (4), pp.1338 - 1351. ⟨10.1159/000490819⟩
Journal articles hal-02565135v1

Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network.

Arnaud Meng , Erwan Corre , Ian Probert , Andres Gutierrez-Rodriguez , Raffaele Siano
Molecular Ecology, 2018, 27 (10), pp.2365-2380. ⟨10.1111/mec.14579⟩
Journal articles hal-02879300v1
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Isolation and differential transcriptome of vascular smooth muscle cells and mid-capillary pericytes from the rat brain

Stéphanie Chasseigneaux , Yasmine Moraca , Véronique Cochois-Guégan , Anne-Cécile Boulay , Alice Gilbert
Scientific Reports, 2018, 8, pp.12272. ⟨10.1038/s41598-018-30739-5⟩
Journal articles hal-01868957v1
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Cyclin G and the Polycomb Repressive complexes PRC1 and PR-DUB cooperate for developmental stability

Delphine Dardalhon-Cuménal , Jérôme Deraze , Camille Dupont , Valérie Ribeiro , Anne Coleno-Costes
PLoS Genetics, 2018, 14(7) (e1007498), ⟨10.1371/journal.pgen.1007498⟩
Journal articles hal-01921636v1
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Acclimation of a low iron adapted Ostreococcus strain to iron limitation through cell biomass lowering

Hugo Botebol , Gaëlle Lelandais , Christophe Six , Emmanuel Lesuisse , Arnaud Meng
Scientific Reports, 2017, 7 (1), pp.327. ⟨10.1038/s41598-017-00216-6⟩
Journal articles hal-01502140v1
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Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction

Ivanova Christa , Ramoni Jonas , Thiziri Aouam , Frischmann Alexa , Bernhard Seiboth
Biotechnology for Biofuels, 2017, 10, pp.209. ⟨10.1186/s13068-017-0897-7⟩
Journal articles hal-01592860v1
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A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata

Jawad Merhej , Antonin Thiebaut , Corinne Blugeon , Juliette Pouch , Mohammed El Amine Ali Chaouche
Frontiers in Microbiology, 2016, 7, pp.645. ⟨10.3389/fmicb.2016.00645⟩
Journal articles hal-01323791v1
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Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype

Alexander Lichius , Frédérique Bidard , Franziska Buchholz , Stéphane Le Crom , Joel Martin
BMC Genomics, 2015, 16 (1), pp.326. ⟨10.1186/s12864-015-1526-0⟩
Journal articles hal-01149671v1

B16 Mitogen And Stress-activated Kinase-1 Deficiency And Transcriptional Dysregulation In Huntington’s Disease

L. Moumne , K. Brami-Cherrier , S. Betuing , S. Le Crom , J. Girault
Journal of Neurology, Neurosurgery and Psychiatry, 2014, 85 (1), pp.A14. ⟨10.1136/jnnp-2014-309032.44⟩
Journal articles hal-01541325v1
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Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain

Dante Poggi-Parodi , Frédérique Bidard , Aurélie Pirayre , Thomas Portnoy , Corinne Blugeon
Biotechnology for Biofuels, 2014, 7, pp.173. ⟨10.1186/s13068-014-0173-z⟩
Journal articles hal-01112360v1

bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes

Jawad Merhej , Amandine Frigo , Stéphane Le Crom , Jean-Michel Camadro , Frédéric Devaux
Yeast, 2014, 31 (10), pp.375-91. ⟨10.1002/yea.3031⟩
Journal articles hal-01132624v1

bPeaks - a solution to perform ChIP-seq peak detection in yeast: application to the analyses of the evolution of the YAP family of stress response transcription factors in Candida glabrata

Jawad Merhej , G. Lelandais , Amandine Frigo , S. Le Crom , J. -M. Camadro
Yeast, 2013, 30 (1), pp.186
Journal articles hal-01528428v1
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Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism.

Lea Atanasova , Stéphane Le Crom , Sabine Gruber , Fanny Coulpier , Verena Seidl-Seiboth
BMC Genomics, 2013, 14 (1), pp.121. ⟨10.1186/1471-2164-14-121⟩
Journal articles inserm-00799174v1
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Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum

Alaguraj Veluchamy , Xin Lin , Florian Maumus , Maximo Rivarola , Jaysheel Bhavsar
Nature Communications, 2013, 4, pp.2091. ⟨10.1038/ncomms3091⟩
Journal articles hal-01545322v1

New Partners in Regulation of Gene Expression: The Enhancer of Trithorax and Polycomb Corto Interacts with Methylated Ribosomal Protein L12 Via Its Chromodomain

Anne Coleno-Costes , Suk Min Jang , Augustin De Vanssay , Julien Rougeot , Tahar Bouceba
PLoS Genetics, 2012, 8 (10), pp.e1003006. ⟨10.1371/journal.pgen.1003006⟩
Journal articles hal-01537175v1

Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses.

Laurent Jourdren , Maria Bernard , Marie-Agnès Dillies , Stéphane Le Crom
Bioinformatics, 2012, 28 (11), pp.1542-3. ⟨10.1093/bioinformatics/bts165⟩
Journal articles hal-02879328v1

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Marie-Agnès Dillies , Andrea Rau , Julie Aubert , Christelle Hennequet-Antier , Marine Jeanmougin
Briefings in Bioinformatics, 2012, 14 (6), pp.671-683. ⟨10.1093/bib/bbs046⟩
Journal articles hal-00782486v1

Mitogen and Stress-activated Kinase-1 deficiency and transcriptional dysregulation in Huntington's Disease

Lara Moumne , Karen Brami-Cherrier , Sandrine Betuing , Elodie Martin , Stephane Le Crom
Human Gene Therapy, 2012, 23 (10), pp.A72-A73
Journal articles hal-01541335v1
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RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.

Sanjiveeni Dhamgaye , Maria Bernard , Gaëlle Lelandais , Odile Sismeiro , Sophie Lemoine
BMC Genomics, 2012, 13 (1), pp.396. ⟨10.1186/1471-2164-13-396⟩
Journal articles inserm-00733893v1

Differential regulation of the cellulase transcription factors XYR1, ACE2, and ACE1 in Trichoderma reesei strains producing high and low levels of cellulase

Thomas Portnoy , Antoine Margeot , Verena Seidl-Seiboth , Stéphane Le Crom , Fadhel Ben Chaabane
Eukaryotic Cell, 2011, 10 (2), pp.262-71. ⟨10.1128/EC.00208-10⟩
Journal articles hal-02879336v1
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The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation.

Thomas Portnoy , Antoine Margeot , Rita Linke , Lea Atanasova , Erzsébet Fekete
BMC Genomics, 2011, 12 (1), pp.269. ⟨10.1186/1471-2164-12-269⟩
Journal articles inserm-00663944v1
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Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Christian Kubicek , Alfredo Herrera-Estrella , Verena Seidl-Seiboth , Diego Martinez , Irina Druzhinina
Genome Biology, 2011, 12 (4), pp.R40. ⟨10.1186/gb-2011-12-4-r40⟩
Journal articles hal-02879334v1

Dok4 is involved in Schwann cell myelination and axonal interaction in vitro

Corinne Blugeon , Stéphane Le Crom , Laurence Richard , Jean-Michel Vallat , Patrick Charnay
Glia, 2011, 59 (3), pp.351-62. ⟨10.1002/glia.21106⟩
Journal articles hal-02879339v1

Teolenn: an efficient and customizable workflow to design high-quality probes for microarray experiments.

Laurent Jourdren , Aurelie Duclos , Christian Brion , Thomas Portnoy , Hugues Mathis
Nucleic Acids Research, 2010, 38 (10), pp.e117. ⟨10.1093/nar/gkq110⟩
Journal articles hal-02879340v1

Novel features of boundary cap cells revealed by the analysis of newly identified molecular markers.

Fanny Coulpier , Stéphane Le Crom , Géraldine Maro , Jan Manent , Marco Giovannini
Glia, 2009, 57 (13), pp.1450-7. ⟨10.1002/glia.20862⟩
Journal articles hal-02879350v1

An evaluation of custom microarray applications: the oligonucleotide design challenge

Sophie Lemoine , Florence Combes , Stéphane Le Crom
Nucleic Acids Research, 2009, 37 (6), pp.1726-39. ⟨10.1093/nar/gkp053⟩
Journal articles hal-02879348v1

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.

Stéphane Le Crom , Wendy Schackwitz , Len Pennacchio , Jon K. Magnuson , David Culley
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (38), pp.16151-6. ⟨10.1073/pnas.0905848106⟩
Journal articles hal-02879345v1
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Genome-wide transcriptome analyses of silicon metabolism in Phaeodactylum tricornutum reveal the multilevel regulation of silicic acid transporters.

Guillaume Sapriel , Michelle Quinet , Marc Heijde , Laurent Jourdren , Véronique Tanty
PLoS ONE, 2009, 4 (10), pp.e7458. ⟨10.1371/journal.pone.0007458⟩
Journal articles hal-02879344v1

Selection of oligonucleotides for whole-genome microarrays with semi-automatic update.

G. Golfier , Sophie Lemoine , A van Miltenberg , A Bendjoudi , J. Rossier
Bioinformatics, 2009, 25 (1), pp.128-9. ⟨10.1093/bioinformatics/btn573⟩
Journal articles hal-02879352v1

Yeast mitochondrial biogenesis : a role for the PUF RNA binding protein Puf3p in mRNA localization

Y. Saint-Georges , M. Garcia , T. Delaveau , Stéphane Le Crom , S. Lemoine
PLoS ONE, 2008, pp.3(6) e2293
Journal articles hal-00333137v1

Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization

Yann Saint-Georges , Mathilde Garcia , Thierry Delaveau , Laurent Jourdren , Stephane Le Crom
PLoS ONE, 2008, 3 (6), pp.e2293. ⟨10.1371/journal.pone.0002293⟩
Journal articles hal-02098526v1

Identification of Phox2b-regulated genes by expression profiling of cranial motoneuron precursors.

Patrick Pla , Marie-Rose Hirsch , Stéphane Le Crom , Simone Reiprich , Vincent Harley
Neural Development, 2008, 3, pp.14. ⟨10.1186/1749-8104-3-14⟩
Journal articles hal-02879353v1

The central role of PDR1 in the foundation of yeast drug resistance.

V. Fardeau , G. Lelandais , A. Oldfield , H. Salin , S. Lemoine
Journal of Biological Chemistry, 2007, 282, pp.5063-5074
Journal articles hal-00173044v1
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Role of heat-shock factor 2 in cerebral cortex formation and as a regulatorof p35 expression

Yunhua Chang , Päivi Östling , Malin Åkerfelt , Diane Trouillet , Murielle Rallu
Genes and Development, 2006, 20 (7), pp.836-847. ⟨10.1101/gad.366906⟩
Journal articles hal-02930812v1
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Goulphar: rapid access and expertise for standard two-color microarray normalization methods.

Sophie Lemoine , Florence Combes , Nicolas Servant , Stéphane Le Crom
BMC Bioinformatics, 2006, 7, pp.467. ⟨10.1186/1471-2105-7-467⟩
Journal articles inserm-00122139v1

Role of heat-shock factor 2 in cerebral cortex formation and as a regulator of p35 expression.

Y. Chang , P. Ostling , M. Akerfelt , D. Trouillet , M. Rallu
Genes and Development, 2006, 20, pp.836-847
Journal articles hal-00091305v1

Doelan: a solution for quality control monitoring of microarray production

Laurent Jourdren , Stéphane Le Crom
Bioinformatics, 2005, 21 (22), pp.4194-5. ⟨10.1093/bioinformatics/bti686⟩
Journal articles hal-02879358v1

Delineation of the conserved functional properties of D1A, D1B and D1C dopamine receptor subtypes in vertebrates.

Stéphane Le Crom , Kim S Sugamori , Anita Sidhu , Hyman B Niznik , Philippe Vernier
Biology of the Cell, 2004, 96 (5), pp.383-94. ⟨10.1016/j.biolcel.2004.03.002⟩
Journal articles hal-00121753v1

yMGV: a cross-species expression data mining tool

Gaëlle Lelandais , Stéphane Le Crom , Frédéric Devaux , Stéphane Vialette , George M. Church
Nucleic Acids Research, 2004, 32 (1), pp.D323-D325
Journal articles hal-00619620v1

Evolution and cell biology of dopamine receptors in vertebrates.

Sophie Callier , Marina Snapyan , Stéphane Le Crom , Delphine Prou , Jean-Didier Vincent
Biology of the Cell, 2003, 95 (7), pp.489-502. ⟨10.1016/S0248-4900(03)00089-3⟩
Journal articles hal-00122156v1

Dopamine receptors for every species: gene duplications and functional diversification in Craniates.

Stéphane Le Crom , Marika Kapsimali , Pierre-Olivier Barôme , Philippe Vernier
J Struct Funct Genomics, 2003, 3 (1-4), pp.161-76. ⟨10.1023/A:1022686622752⟩
Journal articles hal-00122153v1

Ammonia pulses and metabolic oscillations guide yeast colony development.

Zdena Palková , Frédéric Devaux , Markéta Icicová , Lucie Mináriková , Stéphane Le Crom
Molecular Biology of the Cell, 2002, 13 (11), pp.3901-14. ⟨10.1091/mbc.e01-12-0149⟩
Journal articles hal-02879360v1

yMGV: helping biologists with yeast microarray data mining.

Stéphane Le Crom , Frédéric Devaux , Claude Jacq , Philippe Marc
Nucleic Acids Research, 2002, 30 (1), pp.76-9. ⟨10.1093/nar/30.1.76⟩
Journal articles hal-02879364v1

New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRR1 transcription factor regulation system.

Stéphane Le Crom , Frédéric Devaux , Philippe Marc , Xiaoting Zhang , W Scott Moye-Rowley
Molecular and Cellular Biology, 2002, 22 (8), pp.2642-9. ⟨10.1128/mcb.22.8.2642-2649.2002⟩
Journal articles hal-02879362v1

Autocrine activation of adenosine A1 receptors blocks D1A but not D1B dopamine receptor desensitization.

Stéphane Le Crom , Delphine Prou , Philippe Vernier
Journal of Neurochemistry, 2002, 82 (6), pp.1549-52. ⟨10.1046/j.1471-4159.2002.01115.x⟩
Journal articles hal-00122159v1

Intracellular retention of the two isoforms of the D(2) dopamine receptor promotes endoplasmic reticulum disruption.

Delphine Prou , W. J. Gu , Stéphane Le Crom , Jean-Didier Vincent , J. Salamero
Journal of Cell Science, 2001, 114 (Pt 19), pp.3517-27
Journal articles hal-00122165v1

Emotions cerveau et dopamine : les leçons de l'histoire.

Stéphane Le Crom , Marika Kapsimali , Jean-Dider Vincent , Philippe Vernier
Revue du Palais de la Decouverte, 2000, 282, pp.74-85
Journal articles hal-00122796v1

Evolution and development of dopaminergic neurotransmitter systems in vertebrates.[Evolution et développment des systèmes de neurotransmission dopaminergiques chez les vertébrés].

Marika Kapsimali , Helene Dumond , Stéphane Le Crom , Sophie Coudouel , Jean-Didier Vincent
Journal de la Société de Biologie, 2000, 194 (2), pp.87-93
Journal articles hal-00122175v1

Dopamine D1 and adenosine A1 receptors form functionally interacting heteromeric complexes.

Sylvia Ginés , Joëlle Hillion , Maria Torvinen , Stéphane Le Crom , Vincent Casadó
Proceedings of the National Academy of Sciences of the United States of America, 2000, 97 (15), pp.8606-11. ⟨10.1073/pnas.150241097⟩
Journal articles hal-00122183v1

Cross-Species Comparison Using Expression Data

Gaelle Lelandais , Stéphane Le Crom
Introduction to Systems Biology, Humana Press, 2007, ⟨10.1007/978-1-59745-531-2⟩
Book sections hal-02900010v1

Dopamine receptors for every species : Gene duplications and functional diversification in Craniates.

Stéphane Le Crom , Marika Kapsimali , Pierre-Olivier Barôme , Philippe Vernier
Genome Evolution: Gene and Genome Duplications and the Origin of Novel Gene Functions, Springer Netherlands, 2003, ⟨10.1007/978-94-010-0263-9⟩
Book sections hal-02900002v1

A natural history of vertebrate dopamine receptors.

Marika Kapsimali , Stéphane Le Crom , Philippe Vernier
Anita Sidhu, Marc Laruelle, Philippe Vernier. Dopamine Receptors and Transporters, Marcel Dekker Inc, pp.1-45, 2003
Book sections hal-00122816v1