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Functional mapping of N-terminal residues in the yeast proteome uncovers novel determinants for mitochondrial protein import
Salomé Nashed
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Médine Benchouaia
,
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,
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,
Antonin Thiebaut
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Jawad Merhej
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Cyclin G and the Polycomb Repressive complexes PRC1 and PR-DUB cooperate for developmental stability
Delphine Dardalhon-Cuménal
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Valérie Ribeiro
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Anne Coleno-Costes
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Alice Gilbert
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Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network.
Arnaud Meng
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Andres Gutierrez-Rodriguez
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Raffaele Siano
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Increased Fatty Acid Oxidation in Differentiated Proximal Tubular Cells Surviving a Reversible Episode of Acute Kidney Injury
Aurélien Bataille
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Badreddine Mohand Oumoussa
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Marie-Julia Ziliotis
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Isolation and differential transcriptome of vascular smooth muscle cells and mid-capillary pericytes from the rat brain
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Alice Gilbert
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Anne-Cécile Boulay
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hal-02879306v1
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A de novo approach to disentangle partner identity and function in holobiont systems
Arnaud Meng
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Camille Marchet
,
Erwan Corre
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Pierre Peterlongo
,
Adriana A. Alberti
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Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface
Anne- Cécile Boulay
,
Bruno Saubaméa
,
Nicolas Adam
,
Stéphanie Chasseigneaux
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Noémie Mazaré
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inserm-03823110v1
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Aozan: an automated post-sequencing data-processing pipeline
Sandrine Perrin
,
Cyril Firmo
,
Sophie Lemoine
,
Stéphane Le Crom
,
Laurent Jourdren
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hal-03842523v1
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Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction
Ivanova Christa
,
Ramoni Jonas
,
Thiziri Aouam
,
Frischmann Alexa
,
Bernhard Seiboth
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hal-01592860v1
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Acclimation of a low iron adapted Ostreococcus strain to iron limitation through cell biomass lowering
Hugo Botebol
,
Gaëlle Lelandais
,
Christophe Six
,
Emmanuel Lesuisse
,
Arnaud Meng
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A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata
Jawad Merhej
,
Antonin Thiebaut
,
Corinne Blugeon
,
Juliette Pouch
,
Mohammed El Amine Ali Chaouche
Journal articles
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Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
Alexander Lichius
,
Frédérique Bidard
,
Franziska Buchholz
,
Stéphane Le Crom
,
Joel Martin
Journal articles
hal-01149671v1
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Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain
Dante Poggi-Parodi
,
Frédérique Bidard
,
Aurélie Pirayre
,
Thomas Portnoy
,
Corinne Blugeon
Journal articles
hal-01112360v1
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bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes
Jawad Merhej
,
Amandine Frigo
,
Stéphane Le Crom
,
Jean-Michel Camadro
,
Frédéric Devaux
Journal articles
hal-01132624v1
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B16 Mitogen And Stress-activated Kinase-1 Deficiency And Transcriptional Dysregulation In Huntington’s Disease
L. Moumne
,
K. Brami-Cherrier
,
S. Betuing
,
S. Le Crom
,
J. Girault
Journal articles
hal-01541325v1
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bPeaks - a solution to perform ChIP-seq peak detection in yeast: application to the analyses of the evolution of the YAP family of stress response transcription factors in Candida glabrata
Jawad Merhej
,
G. Lelandais
,
Amandine Frigo
,
S. Le Crom
,
J. -M. Camadro
Yeast, 2013, 30 (1), pp.186
Journal articles
hal-01528428v1
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Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism.
Lea Atanasova
,
Stéphane Le Crom
,
Sabine Gruber
,
Fanny Coulpier
,
Verena Seidl-Seiboth
Journal articles
inserm-00799174v1
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Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum
Alaguraj Veluchamy
,
Xin Lin
,
Florian Maumus
,
Maximo Rivarola
,
Jaysheel Bhavsar
Journal articles
hal-01545322v1
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Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses.
Laurent Jourdren
,
Maria Bernard
,
Marie-Agnès Dillies
,
Stéphane Le Crom
Journal articles
hal-02879328v1
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New Partners in Regulation of Gene Expression: The Enhancer of Trithorax and Polycomb Corto Interacts with Methylated Ribosomal Protein L12 Via Its Chromodomain
Anne Coleno-Costes
,
Suk Min Jang
,
Augustin De Vanssay
,
Julien Rougeot
,
Tahar Bouceba
Journal articles
hal-01537175v1
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Mitogen and Stress-activated Kinase-1 deficiency and transcriptional dysregulation in Huntington's Disease
Lara Moumne
,
Karen Brami-Cherrier
,
Sandrine Betuing
,
Elodie Martin
,
Stephane Le Crom
Human Gene Therapy, 2012, 23 (10), pp.A72-A73
Journal articles
hal-01541335v1
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RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.
Sanjiveeni Dhamgaye
,
Maria Bernard
,
Gaëlle Lelandais
,
Odile Sismeiro
,
Sophie Lemoine
Journal articles
inserm-00733893v1
|
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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
Marie-Agnès Dillies
,
Andrea Rau
,
Julie Aubert
,
Christelle Hennequet-Antier
,
Marine Jeanmougin
Journal articles
hal-00782486v1
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The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation.
Thomas Portnoy
,
Antoine Margeot
,
Rita Linke
,
Lea Atanasova
,
Erzsébet Fekete
Journal articles
inserm-00663944v1
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Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.
Christian Kubicek
,
Alfredo Herrera-Estrella
,
Verena Seidl-Seiboth
,
Diego Martinez
,
Irina Druzhinina
Journal articles
hal-02879334v1
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Differential regulation of the cellulase transcription factors XYR1, ACE2, and ACE1 in Trichoderma reesei strains producing high and low levels of cellulase
Thomas Portnoy
,
Antoine Margeot
,
Verena Seidl-Seiboth
,
Stéphane Le Crom
,
Fadhel Ben Chaabane
Journal articles
hal-02879336v1
|
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Dok4 is involved in Schwann cell myelination and axonal interaction in vitro
Corinne Blugeon
,
Stéphane Le Crom
,
Laurence Richard
,
Jean-Michel Vallat
,
Patrick Charnay
Journal articles
hal-02879339v1
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Teolenn: an efficient and customizable workflow to design high-quality probes for microarray experiments.
Laurent Jourdren
,
Aurelie Duclos
,
Christian Brion
,
Thomas Portnoy
,
Hugues Mathis
Journal articles
hal-02879340v1
|
|
Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.
Stéphane Le Crom
,
Wendy Schackwitz
,
Len Pennacchio
,
Jon K. Magnuson
,
David Culley
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (38), pp.16151-6. ⟨10.1073/pnas.0905848106⟩
Journal articles
hal-02879345v1
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An evaluation of custom microarray applications: the oligonucleotide design challenge
Sophie Lemoine
,
Florence Combes
,
Stéphane Le Crom
Journal articles
hal-02879348v1
|
|
Genome-wide transcriptome analyses of silicon metabolism in Phaeodactylum tricornutum reveal the multilevel regulation of silicic acid transporters.
Guillaume Sapriel
,
Michelle Quinet
,
Marc Heijde
,
Laurent Jourdren
,
Véronique Tanty
Journal articles
hal-02879344v1
|
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Selection of oligonucleotides for whole-genome microarrays with semi-automatic update.
G. Golfier
,
Sophie Lemoine
,
A van Miltenberg
,
A Bendjoudi
,
J. Rossier
Journal articles
hal-02879352v1
|
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Novel features of boundary cap cells revealed by the analysis of newly identified molecular markers.
Fanny Coulpier
,
Stéphane Le Crom
,
Géraldine Maro
,
Jan Manent
,
Marco Giovannini
Journal articles
hal-02879350v1
|
|
Yeast mitochondrial biogenesis : a role for the PUF RNA binding protein Puf3p in mRNA localization
Y. Saint-Georges
,
M. Garcia
,
T. Delaveau
,
Stéphane Le Crom
,
S. Lemoine
PLoS ONE, 2008, pp.3(6) e2293
Journal articles
hal-00333137v1
|
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Identification of Phox2b-regulated genes by expression profiling of cranial motoneuron precursors.
Patrick Pla
,
Marie-Rose Hirsch
,
Stéphane Le Crom
,
Simone Reiprich
,
Vincent Harley
Journal articles
hal-02879353v1
|
|
Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization
Yann Saint-Georges
,
Mathilde Garcia
,
Thierry Delaveau
,
Laurent Jourdren
,
Stephane Le Crom
Journal articles
hal-02098526v1
|
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The central role of PDR1 in the foundation of yeast drug resistance.
V. Fardeau
,
G. Lelandais
,
A. Oldfield
,
H. Salin
,
S. Lemoine
Journal of Biological Chemistry, 2007, 282, pp.5063-5074
Journal articles
hal-00173044v1
|
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Role of heat-shock factor 2 in cerebral cortex formation and as a regulatorof p35 expression
Yunhua Chang
,
Päivi Östling
,
Malin Åkerfelt
,
Diane Trouillet
,
Murielle Rallu
Journal articles
hal-02930812v1
|
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Role of heat-shock factor 2 in cerebral cortex formation and as a regulator of p35 expression.
Y. Chang
,
P. Ostling
,
M. Akerfelt
,
D. Trouillet
,
M. Rallu
Genes and Development, 2006, 20, pp.836-847
Journal articles
hal-00091305v1
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Goulphar: rapid access and expertise for standard two-color microarray normalization methods.
Sophie Lemoine
,
Florence Combes
,
Nicolas Servant
,
Stéphane Le Crom
Journal articles
inserm-00122139v1
|
|
Goulphar: rapid access and expertise for standard two-color microarray normalization methods
Sophie Lemoine
,
Florence Combes
,
Nicolas Servant
,
Stéphane Le Crom
Journal articles
hal-03842496v1
|
|
Doelan: a solution for quality control monitoring of microarray production
Laurent Jourdren
,
Stéphane Le Crom
Journal articles
hal-02879358v1
|
|
yMGV: a cross-species expression data mining tool
Gaëlle Lelandais
,
Stéphane Le Crom
,
Frédéric Devaux
,
Stéphane Vialette
,
George M. Church
Nucleic Acids Research, 2004, 32 (1), pp.D323-D325
Journal articles
hal-00619620v1
|
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Delineation of the conserved functional properties of D1A, D1B and D1C dopamine receptor subtypes in vertebrates.
Stéphane Le Crom
,
Kim S Sugamori
,
Anita Sidhu
,
Hyman B Niznik
,
Philippe Vernier
Journal articles
hal-00121753v1
|
|
Dopamine receptors for every species: gene duplications and functional diversification in Craniates.
Stéphane Le Crom
,
Marika Kapsimali
,
Pierre-Olivier Barôme
,
Philippe Vernier
Journal articles
hal-00122153v1
|
|
Evolution and cell biology of dopamine receptors in vertebrates.
Sophie Callier
,
Marina Snapyan
,
Stéphane Le Crom
,
Delphine Prou
,
Jean-Didier Vincent
Journal articles
hal-00122156v1
|
|
yMGV: helping biologists with yeast microarray data mining.
Stéphane Le Crom
,
Frédéric Devaux
,
Claude Jacq
,
Philippe Marc
Journal articles
hal-02879364v1
|
|
Autocrine activation of adenosine A1 receptors blocks D1A but not D1B dopamine receptor desensitization.
Stéphane Le Crom
,
Delphine Prou
,
Philippe Vernier
Journal articles
hal-00122159v1
|
|
New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRR1 transcription factor regulation system.
Stéphane Le Crom
,
Frédéric Devaux
,
Philippe Marc
,
Xiaoting Zhang
,
W Scott Moye-Rowley
Journal articles
hal-02879362v1
|
|
Ammonia pulses and metabolic oscillations guide yeast colony development.
Zdena Palková
,
Frédéric Devaux
,
Markéta Icicová
,
Lucie Mináriková
,
Stéphane Le Crom
Journal articles
hal-02879360v1
|
|
Intracellular retention of the two isoforms of the D(2) dopamine receptor promotes endoplasmic reticulum disruption.
Delphine Prou
,
W. J. Gu
,
Stéphane Le Crom
,
Jean-Didier Vincent
,
J. Salamero
Journal of Cell Science, 2001, 114 (Pt 19), pp.3517-27
Journal articles
hal-00122165v1
|
|
Emotions cerveau et dopamine : les leçons de l'histoire.
Stéphane Le Crom
,
Marika Kapsimali
,
Jean-Dider Vincent
,
Philippe Vernier
Revue du Palais de la Decouverte, 2000, 282, pp.74-85
Journal articles
hal-00122796v1
|
|
Dopamine D1 and adenosine A1 receptors form functionally interacting heteromeric complexes.
Sylvia Ginés
,
Joëlle Hillion
,
Maria Torvinen
,
Stéphane Le Crom
,
Vincent Casadó
Proceedings of the National Academy of Sciences of the United States of America, 2000, 97 (15), pp.8606-11. ⟨10.1073/pnas.150241097⟩
Journal articles
hal-00122183v1
|
|
Evolution and development of dopaminergic neurotransmitter systems in vertebrates.[Evolution et développment des systèmes de neurotransmission dopaminergiques chez les vertébrés].
Marika Kapsimali
,
Helene Dumond
,
Stéphane Le Crom
,
Sophie Coudouel
,
Jean-Didier Vincent
Journal de la Société de Biologie, 2000, 194 (2), pp.87-93
Journal articles
hal-00122175v1
|