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stephane uroz

Directeur de Recherche (DR2) Directeur Scientifique et Technique du Labex ARBRE depuis janvier 2022
38
Documents
Affiliations actuelles
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Identifiants chercheurs

Présentation

**BIO:** I received my PhD in Microbial Ecology from the University of Paris XI (Orsay) in 2004 with Yves DESSAUX and Phil OGER as my advisers. My PhD research project was focused on the biological stability of the quorum sensing signal molecules, especially the N-acyl homoserine lactone class based on the hypothesis that these molecules need to be degraded to act as a signal, possibly by bacteria naturally occurring in the soil.To verify this hypothesis, I combined classical microbiology, molecular tools, genetic, biochemistry and chemistry. I performed my PhD in three places : in the lab ‘Interactions Plant Microorganisms’ at the Institute of Plant Sciences (ISV, Gif-sur-Yvette ; adviser : [Yves Dessaux](http://www.isv.cnrs-gif.fr/recherche/yd/yd.html)) ; in the lab of “Sciences de la Terre” at Normal School (ENS, Lyon ; adviser : Phil Oger) and at the Institute of Infections and Immunity at University of Nottingham (Queen’s Medical Centre, Nottingham; advisers: [Paul Williams, Miguel Camara and Siri Ram Chhabra](http://www.nottingham.ac.uk/quorum/))(European Union Marie Curie programme). The 15th of october 2004, I defended my thesis (Jury: P. SIMONET, S. REVERCHON, D. HAAS, M. DUBOW, Y. DESSAUX, P. OGER). The 22th of october 2004, I was hired as Junior Research associate (CR2) in the EFPA (now ECODIV) department of the French National Institute for Agricultural Reasearch (INRA), at the interface between two research units: i) The “Tree microbes interactions” (IAM, UMR1136) unit and ii) the “Biogeochemical cycles in forest ecosystems” (BEF, UR1138) unit. I am member of the Ecogenomic and mineral weathering teams. In January 2009, I became Research associate (CR1). The 24th of februrary 2014, I defended my HDR (Habilitation à diriger des recherches) entitled “Ecology of biotic and abiotic interactions of the forest soil bacterial communities: characterization of the actors, mechanims and related genes” (Jury: C. MOUGEL, P. SIMONET, S. VUILLEMIER, R. MARMEISSE, L. MOULIN, P. LEBLOND, E. GELHAYE, P. OGER and P. FREY-KLETT). I was appointed INRA Research Director (DR2) in december 2014. I was head of the Ecogenomics of interactions team in from January 2020 to december 2021. I was appointed Head of the Cluster[ of Excellence ARBRE (Advanced Research on the Biology of Tree Biology and Forest Ecosystems)](http://mycor.nancy.inra.fr/ARBRE) with Myriam LEGAY and Mathieu PETRISSANS. My main collaborator is **Marie-Pierre TURPAULT** (Geochemist and mineralogist) and Cintia BLANCO NOUCHE (PhD). I am also involved in several projects related to microbial ecology, interactions between bacteria/fungi and signalling between bacteria with the colleagues of the **Ecogenomic team** (**M. BUEE, A. DEVEAU, F.MARTIN, L. AUER, E. MORIN**). **RESEARCH TOPICS:** My current projects, integrated in a more global questioning related to forest ecosystem functioning and sustainability, are linking genomics on model bacterial strains to microbial ecology: - **Forest soil as a reservoir of microbial biodiversity** (specific diversity by monogenic metagenomics, global approach by massive metagenomics and functional metagenomics) - Forest soil as a reservoir of **mineral weathering** bacteria (functional diversity, genetics, genomics link to biogeochemistry and mineralogy) - **Minerals and rocks** as microbial habitats (**mineralosphere**) - Microbial interactions and functions in the **rhizosphere and mycorrhizosphere** (e.g., quorum sensing ; competition) - Impact of **nutrient availability** (inorganic nutrients)/ soil type /tree species on bacterial communities - Impact of **drought** on the distribution and functioning of the bacterial communities - Impact of the microorganisms on the **nutrient cycle** (geomicrobiology) - **Genomics and genetics** of mineral weathering bacteria **COLLABORATIONS :** [Phil Oger](http://geologie.ens-lyon.fr/LST/spip.php?article50) (CNRS-ENS, Lyon), PE Courty (INRAE, Dijon), [Johan H.J. Leveau](http://plantpathology.ucdavis.edu/faculty/leveau/) (Univ. Davis, USA), [Wietse de Boer ](http://www.nioo.knaw.nl/users/wdeboer)(NIOO-KNAW, Netherlands),[ Jussi Heinonsalo](http://www.helsinki.fi/bioscience/myco/staff.htm) (Univ. Helsinki, Finland), Jean Armengaud (CEA-Marcoule, Bagnols-sur-Cèze), Cédric Paris (ENSAIA/UL, Vandoeuvre-les-Nancy).

Publications

"turpault-marie-pierre"
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The mineral weathering ability of Collimonas pratensis PMB3(1) involves a Malleobactin-mediated iron acquisition system

Laura Picard , Cédric Paris , Tiphaine Dhalleine , Emmanuelle Morin , Philippe Oger
Environmental Microbiology, 2022, 24 (2), pp. 784-802. ⟨10.1111/1462-2920.15508⟩
Article dans une revue hal-03194986v1
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Identification of a novel type of glucose dehydrogenase involved in the mineral weathering ability of Collimonas pratensis strain PMB3(1)

Laura Picard , Marie-Pierre M.-P. Turpault , P. Oger , Stephane Uroz
FEMS Microbiology Ecology, 2021, 97 (1), pp.fiaa232. ⟨10.1093/femsec/fiaa232⟩
Article dans une revue hal-03000681v1
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Draft Genome Sequence of Collimonas pratensis Strain PMB3(1), an Effective Mineral-Weathering and Chitin-Hydrolyzing Bacterial Strain

Laura Picard , Philippe Oger , Marie-Pierre M.-P. Turpault , Stephane Uroz
Microbiology Resource Announcements, 2020, 9 (37), ⟨10.1128/MRA.00601-20⟩
Article dans une revue hal-02939115v1
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Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1(12) and mineral

Stephane Uroz , Laura Picard , Marie-Pierre M.-P. Turpault , Lucas Auer , J. Armengaud
Environmental Microbiology, In press, 22 (9), pp.3838-3862. ⟨10.1111/1462-2920.15159⟩
Article dans une revue hal-02902180v1

Tree roots select specific bacterial communities in the subsurface critical zone

Océane Nicolitch , Yannick Colin , Marie-Pierre M.-P. Turpault , Laure Fauchery , Stéphane Uroz
Soil Biology and Biochemistry, 2017, 115, pp.109-123. ⟨10.1016/j.soilbio.2017.07.003⟩
Article dans une revue hal-01683170v1

Identification, distribution, and quantification of biominerals in a deciduous forest

Célia Krieger , Christophe Calvaruso , C. Morlot , Stéphane Uroz , L. Salsi
Geobiology, 2017, 15 (2), pp.296-310. ⟨10.1111/gbi.12223⟩
Article dans une revue hal-01594541v1
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Mineral types and tree species determine the functional and taxonomic structures of forest soil bacterial communities

Yannick Colin , Océane Nicolitch-Café , Marie-Pierre M.-P. Turpault , Stéphane Uroz
Applied and Environmental Microbiology, 2017, 83 (5), pp.e02684-16. ⟨10.1128/AEM.02684-16⟩
Article dans une revue hal-01548673v1

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence

Yannick Colin , Océane Nicolitch-Café , J. D. van Nostrand , J Z Zhou , Marie-Pierre M.-P. Turpault
Scientific Reports, 2017, 7 (1), pp.1-17. ⟨10.1038/s41598-017-07639-1⟩
Article dans une revue hal-01611454v1

Soil type determines the distribution of nutrient mobilizing bacterial communities in the rhizosphere of beech trees

Océane Nicolitch-Café , Yannick Colin , Marie-Pierre M.-P. Turpault , Stéphane Uroz
Soil Biology and Biochemistry, 2016, 103, pp.429-445. ⟨10.1016/j.soilbio.2016.09.018⟩
Article dans une revue hal-01490771v1

The Mineralosphere Concept: Mineralogical Control of the Distribution and Function of Mineral-associated Bacterial Communities

Stephane Uroz , Laura Catherine Kelly , Marie-Pierre M.-P. Turpault , Cendrella Lepleux , Pascale Frey-Klett
Trends in Microbiology, 2015, 23 (12), pp.751 - 762. ⟨10.1016/j.tim.2015.10.004⟩
Article dans une revue hal-01577955v1

A short-term mineral amendment impacts the mineral weathering bacterial communities in an acidic forest soil

Cendrella Lepleux , Stéphane Uroz , Christelle Collignon , Jean-Louis Churin , Marie-Pierre M.-P. Turpault
Research in Microbiology, 2013, 164 (7), pp.729 - 739. ⟨10.1016/j.resmic.2013.03.022⟩
Article dans une revue hal-01268300v1

Increase of apatite dissolution rate by Scots pine roots associated or not with Burkholderia glathei PML1(12)Rp in open-system flow microcosms

Christophe Calvaruso , Marie-Pierre M.-P. Turpault , Pascale Frey-Klett , Stéphane Uroz , Marie-Claire Pierret
Geochimica et Cosmochimica Acta, 2013, 106, pp.287 - 306. ⟨10.1016/j.gca.2012.12.014⟩
Article dans une revue hal-01268141v1

Functional Profiling and Distribution of the Forest Soil Bacterial Communities Along the Soil Mycorrhizosphere Continuum

Stéphane S. Uroz , Pierre-Emmanuel Courty , J-Claude J.-C. Pierrat , M. M. Peter , Marc Buée
Microbial ecology, 2013, 66 (2), pp.404 - 415. ⟨10.1007/s00248-013-0199-y⟩
Article dans une revue hal-01001500v1

Taxonomic and functional diversity of Streptomyces in a forest soil

Cyril Bontemps , Maxime Toussaint , Pierre-Vincent Revol , Laurence Hotel , Mathilde Jeanbille
FEMS Microbiology Letters, 2013, 342 (2), pp.157 - 167. ⟨10.1111/1574-6968.12126⟩
Article dans une revue hal-01655681v1

Minerals Affect the Specific Diversity of Forest Soil Bacterial Communities

Stéphane Uroz , Marie-Pierre M.-P. Turpault , Christine Delaruelle , Louis Mareschal , J-Claude Pierrat
Geomicrobiology Journal, 2012, 29 (1), pp.88 - 98. ⟨10.1080/01490451.2010.523764⟩
Article dans une revue hal-01053135v1

Laccaria bicolor S238N improves Scots pine mineral nutrition by increasing root nutrient uptake from soil minerals but does not increase mineral weathering (vol 328, pg 145, 2010)

Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Stéphane S. Uroz , Elisabeth Leclerc , Antoine Kies
Plant and Soil, 2011, 346 (1-2), pp.401 - 401. ⟨10.1007/s11104-011-0915-7⟩
Article dans une revue hal-02643917v1

Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems

Stéphane Uroz , Philippe M. Oger , Cendrella Lepleux , Christelle Collignon , Pascale P. Frey-Klett
Research in Microbiology, 2011, 162 (9), pp.820-831. ⟨10.1016/j.resmic.2011.01.013⟩
Article dans une revue insu-00682028v1

The role of ectomycorrhizal communities in forest ecosystem processes

Pierre-Emmanuel Courty , Marc Buée , Abdala Gamby Diedhiou , Pascale P. Frey-Klett , François F. Le Tacon
Soil Biology and Biochemistry, 2010, 42 (5), pp.679-698. ⟨10.1016/j.soilbio.2009.12.006⟩
Article dans une revue hal-02663834v1

Laccaria bicolor S238N improves Scots pine mineral nutrition by increasing root nutrient uptake from soil minerals but does not increase mineral weathering

Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Stéphane Uroz , Elisabeth Leclerc , Antoine Kies
Plant and Soil, 2010, 328 (1-2), pp.145-154. ⟨10.1007/s11104-009-0092-0⟩
Article dans une revue hal-02658161v1

Influence of forest trees on the distribution of mineral weathering-associated bacterial communities of the scleroderma citrinum mycorrhizosphere

Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Elisabeth Leclerc , Jacques J. Ranger , Jean J. Garbaye
Applied and Environmental Microbiology, 2010, 76 (14), pp.4780-4787. ⟨10.1128/AEM.03040-09⟩
Article dans une revue hal-02668615v1

Mineral weathering by bacteria: ecology, actors and mechanisms

Stéphane Uroz , Christophe Calvaruso , Marie-Pierre M.-P. Turpault , Pascale P. Frey-Klett
Trends in Microbiology, 2009, 17 (8), pp.378-387. ⟨10.1016/j.tim.2009.05.004⟩
Article dans une revue hal-02659297v1

Efficient mineral weathering is a distinctive functional trait of the bacterial genus Collimonas

Stéphane Uroz , Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Alain A. Sarniguet , Wietse de Boer
Soil Biology and Biochemistry, 2009, 41 (10), pp.2178-2186. ⟨10.1016/j.soilbio.2009.07.031⟩
Article dans une revue hal-02659896v1

Interactions between mycorrhizal fungi and mycorrhizosphere bacteria during mineral weathering: Budget analysis and bacterial quantification

Nina Koele , Marie-Pierre M.-P. Turpault , Ernst E. Hildebrand , Stéphane Uroz , Pascale P. Frey-Klett
Soil Biology and Biochemistry, 2009, 41 (9), pp.1935-1942. ⟨10.1016/j.soilbio.2009.06.017⟩
Article dans une revue hal-02657805v1

Effect of the Mycorrhizosphere on the Genotypic and Metabolic Diversity of the Bacterial Communities Involved in Mineral Weathering in a Forest Soil

Stéphane Uroz , Christophe Calvaruso , Marie-Pierre M.-P. Turpault , J-Claude Pierrat , C Mustin
Applied and Environmental Microbiology, 2007, 73 (9), pp.3019-3027. ⟨10.1128/AEM.00121-07⟩
Article dans une revue hal-01195006v1

Effet de la substitution d'essence sur le fonctionnement et la durabilité des écosystèmes forestiers : l'apport des travaux pluridisciplinaires menés en forêt de Breuil Chenue - Morvan

Jacques J. Ranger , Dominique Gelhaye , Séverine Bienaime , M. Bonneau , Pascal Bonnaud
Bourgogne Nature, 2007, pp.45-68
Article dans une revue hal-02664164v1

Impact of nutrient availability on the diversity, function and functioning of the forest soil bacterial communities: insights from the soil succession of the forest experimental site of Montiers.

Stephane Uroz , Marie-Pierre M.-P. Turpault , Océane Nicolitch , Yannick Colin , Marc Buée
Labex ARBRE conference, Oct 2016, Champenoux, France
Communication dans un congrès hal-03339707v1

Effect of soil type on the beech fine root distribution

Marie-Pierre M.-P. Turpault , Christophe Calvaruso , Stéphane Uroz , Paul Olivier Redon , Gil Kirchen
Rhizosphere 4 congress, Jun 2015, Maastricht, Netherlands
Communication dans un congrès hal-01269130v1

Contribution of metagenomics to the study of mineral weathering bacterial communities in forest soils

Stéphane S. Uroz , Marc Buée , Aurélie Cébron , Wietse de Boer , Pascale P. Frey-Klett
MEM days (Meta’omics of the microbial ecosystems), 2014, Paris, France
Communication dans un congrès hal-02796164v1

Characterisation of Active Forest Soil Bacteria during Mineral Weathering

L-C. Kelly , Stéphane Uroz , Marie-Pierre M.-P. Turpault
Goldschmidt, Aug 2013, Florence, Italy
Communication dans un congrès hal-01269132v1

Taxonomic and functional diversity of Streptomyces in a forest soil

Cyril Bontemps , Laurence Hotel , Pierre-Vincent Revol , Mathilde Jeanbille , Stéphane Uroz
Journées Actinomycètes, 2012, Nancy, France
Communication dans un congrès hal-01269133v1

Combination of culture-independent and dependent approach reveals positive correlation between abundance of Beta-proteobacteria and mineral weathering in nutrient-poor forest soil

Cendrella Lepleux , Marie-Pierre M.-P. Turpault , P. Oger , Pascale P. Frey-Klett , Stéphane S. Uroz
14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Coppenague, Danemark
Communication dans un congrès hal-02745200v1

Life as the catalyst of mineral weathering in acidic forest ecosystem

Marie-Pierre M.-P. Turpault , Stéphane S. Uroz , Christophe C. Calvaruso , Christelle Collignon , Louis Mareschal
Goldschmidt 2011, Aug 2011, Prague, Czech Republic
Communication dans un congrès hal-02744525v1

Identification et suivi des bactéries et gènes impliqués dans l’altération des minéraux et la fertilité des sols forestiers

Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , P. Oger , Christelle Collignon , Wietse de Boer
Colloque FRB 2011, Sep 2011, Montpellier, France
Communication dans un congrès hal-02744770v1

Forest tree species shape their soil microbiome

Stéphane S. Uroz , Phil Oger , Emilie Tisserand , Aurélie Cébron , Marie-Pierre M.-P. Turpault
Rhizosphere 4 congress, Jun 2015, Maastricht, Netherlands. 2015
Poster de conférence hal-02800245v1

Forest tree species shape their soil microbiome

Stéphane S. Uroz , Phil Oger , Emilie Tisserand , Aurélie Cébron , Marie-Pierre M.-P. Turpault
1. Global Soil Biodiversity Conference : Assessing Soil Biodiversity and its Role for Ecosystem Services, Dec 2014, Dijon, France. 2014
Poster de conférence hal-02796803v1

Impact of soil type on the structure of the microbial communities: Insights from the Montiers-sur-Saulx soil succession

Océane Nicolitch-Café , Mathilde Jeanbille , Marc Buée , Yannick Colin , Marie-Pierre M.-P. Turpault
1. Global Soil Biodiversity Conference : Assessing Soil Biodiversity and its Role for Ecosystem Services, Dec 2014, Dijon, France. 2014
Poster de conférence hal-02792897v1

Caractérisation taxonomique et fonctionnelle des communautés bactériennes associées à la surface des minéraux : Combinaison d’approches non-cultivable et cultivable

Cendrella Lepleux , Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , P. Oger , Pascale P. Frey-Klett
Congrès Ecole Thématique Expert Génomique Environnementale (ETEGE), 2012, Aussois, France. 2012
Poster de conférence hal-02805606v1

Taxonomic and functional characterization of the mineral associated bacterial communities in forest soil

Cendrella Lepleux , Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , Pascale P. Frey-Klett
Ecology of soil microorganisms: Microbes as important drivers of the soil processes, Apr 2011, Prague, Czech Republic. 2011
Poster de conférence hal-02804405v1