stephane uroz

119
Documents
Affiliation actuelle
  • Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

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Publications

Feedback effect of the size of mineral particles on the molecular mechanisms employed by Caballeronia mineralivorans PML1(12) to weather minerals

Cintia Blanco Nouche , Carine Cochet , Marie-Pierre M.-P. Turpault , Stéphane Uroz
npj Materials Degradation, 2024, 8 (1), pp.129. ⟨10.1038/s41529-024-00544-9⟩
Article dans une revue hal-04864217 v1
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Draft genome sequence of Collimonas sp. strain H4R21, an effective mineral-weathering bacterial strain isolated from the beech rhizosphere

Morin E. , Stéphane Uroz , Kumar R. , Rey M.W. , Pham J. et al.
Microbiology Resource Announcements, 2024, 13 (8), ⟨10.1128/mra.00308-24⟩
Article dans une revue hal-04672477 v1

Acidification-based mineral weathering mechanism involves a glucose/methanol/choline oxidoreductase in Caballeronia mineralivorans PML1(12)

Cintia Blanco Nouche , Laura Picard , Carine Cochet , Cédric Paris , Philippe Oger et al.
Applied and Environmental Microbiology, 2024, 90 (12), ⟨10.1128/aem.01221-24⟩
Article dans une revue hal-04771098 v1
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Collimonas rhizosphaerae sp. nov., a novel species isolated from the beech rhizosphere

Stéphane Uroz , Ségolène Bouche , Emmanuelle Morin , Mathilde Bocquart , Ravi Kumar et al.
International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (7), pp.006481. ⟨10.1099/ijsem.0.006481⟩
Article dans une revue hal-04672474 v1

The cultivation regimes of Morchella sextelata trigger shifts in the community assemblage and ecological traits of soil bacteria

Qi Zhao , Stéphane Uroz , Tianpeng Gao , Jing Li , Fengqin He et al.
Frontiers in Microbiology, 2023, 14 (5), pp.1257905. ⟨10.3389/fmicb.2023.1257905⟩
Article dans une revue hal-04216180 v1
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Mineral weathering by Collimonas pratensis PMB3(1) as a function of mineral properties, solution chemistry and carbon substrate

Laura Picard , Cintia Blanco Nouche , Carine Cochet , Marie-Pierre Turpault , Stéphane Uroz
npj Materials Degradation, 2023, 7 (1), pp.76. ⟨10.1038/s41529-023-00396-9⟩
Article dans une revue hal-04216176 v1
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Scleromatobacter humisilvae gen. nov., sp. nov., a novel bacterium isolated from oak forest soil

Sophie Mieszkin , Blandine Trouche , Julien Ancousture , Youssef Raouf , Stéphane Uroz et al.
International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (3), pp.005793. ⟨10.1099/ijsem.0.005793⟩
Article dans une revue hal-04236566 v1
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The non-ribosomal peptide synthetase-independent siderophore (NIS) rhizobactin produced by Caballeronia mineralivorans PML1(12) confers the ability to weather minerals

Cintia Blanco Nouche , Cédric Paris , Tiphaine Dhalleine , Phil M. Oger , Marie-Pierre Turpault et al.
Applied and Environmental Microbiology, 2023, 89 (10), pp.0045323. ⟨10.1128/aem.00453-23⟩
Article dans une revue hal-04297012 v1
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Genomic and transcriptomic characterization of the Collimonas quorum sensing genes and regulon

Stephane Uroz , Océane Geisler , Laure Fauchery , Raphaël Lami , Alice M.S. Rodrigues et al.
FEMS Microbiology Ecology, 2022, 98 (11), ⟨10.1093/femsec/fiac100⟩
Article dans une revue hal-03915632 v1
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Recent progress in understanding the ecology and molecular genetics of soil mineral weathering bacteria

Stéphane Uroz , Laura Picard , Marie-Pierre Turpault
Trends in Microbiology, 2022, 30 (9), pp.882-897. ⟨10.1016/j.tim.2022.01.019⟩
Article dans une revue hal-03614493 v1
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The mineral weathering ability of Collimonas pratensis PMB3(1) involves a Malleobactin-mediated iron acquisition system

Laura Picard , Cédric Paris , Tiphaine Dhalleine , Emmanuelle Morin , Phil M. Oger et al.
Environmental Microbiology, 2022, 24 (2), pp. 784-802. ⟨10.1111/1462-2920.15508⟩
Article dans une revue hal-03194986 v1
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Acidisoma silvae sp. nov. and Acidisoma cellulosilytica sp. nov., Two Acidophilic Bacteria Isolated from Decaying Wood, Hydrolyzing Cellulose and Producing Poly-3-hydroxybutyrate

Sophie Mieszkin , Eva Pouder , Stéphane Uroz , Christelle Simon-Colin , Karine Alain
Microorganisms, 2021, 9 (10), pp.2053. ⟨10.3390/microorganisms9102053⟩
Article dans une revue hal-03357174 v1
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Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria

François Thomas , Nolwen Le Duff , Ting-Di Wu , Aurélie Cébron , Stéphane Uroz et al.
The International Society of Microbiologial Ecology Journal, 2021, 15 (10), pp.3062-3075. ⟨10.1038/s41396-021-00987-x⟩
Article dans une revue hal-03220808 v1
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Identification of a novel type of glucose dehydrogenase involved in the mineral weathering ability of Collimonas pratensis strain PMB3(1)

Laura Picard , Marie-Pierre M.-P. Turpault , Phil M. Oger , Stephane Uroz
FEMS Microbiology Ecology, 2021, 97 (1), pp.fiaa232. ⟨10.1093/femsec/fiaa232⟩
Article dans une revue hal-03000681 v1
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Oak decaying wood harbors taxonomically and functionally different bacterial communities in sapwood and heartwood

S. Mieszkin , P. Richet , C. Bach , C. Lambrot , Laurent Augusto et al.
Soil Biology and Biochemistry, 2021, 155, pp.1-12. ⟨10.1016/j.soilbio.2021.108160⟩
Article dans une revue hal-03195736 v1
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Forest plant cover and mineral type determine the diversity and composition of mineral-colonizing fungal communities

Y. Colin , M.-P. Turpault , L. Fauchery , Marc Buée , Stéphane Uroz
European Journal of Soil Biology, 2021, 105, pp.103334. ⟨10.1016/j.ejsobi.2021.103334⟩
Article dans une revue hal-03336939 v1
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Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1(12) and mineral

Stephane Uroz , Laura Picard , Marie-Pierre M.-P. Turpault , Lucas Auer , J. Armengaud et al.
Environmental Microbiology, In press, 22 (9), pp.3838-3862. ⟨10.1111/1462-2920.15159⟩
Article dans une revue hal-02902180 v1
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Draft Genome Sequence of Collimonas pratensis Strain PMB3(1), an Effective Mineral-Weathering and Chitin-Hydrolyzing Bacterial Strain

Laura Picard , Phil M. Oger , Marie-Pierre M.-P. Turpault , Stephane Uroz
Microbiology Resource Announcements, 2020, 9 (37), ⟨10.1128/MRA.00601-20⟩
Article dans une revue hal-02939115 v1
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Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect

Pierre Plassart , Nicolas Chemidlin Prévost-Bouré , Stéphane Uroz , Samuel S. Dequiedt , Dorothy Stone et al.
Scientific Reports, 2019, 9 (1), pp.1-17. ⟨10.1038/s41598-018-36867-2⟩
Article dans une revue hal-02067245 v1
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Plant Symbionts Are Engineers of the Plant-Associated Microbiome

Stéphane Uroz , Pierre-Emmanuel Courty , Phil M. Oger
Trends in Plant Science, 2019, 24 (10), pp.905-916. ⟨10.1016/j.tplants.2019.06.008⟩
Article dans une revue hal-02334474 v1
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A microcosm approach highlights the response of soil mineral weathering bacterial communities to an increase of K and Mg availability

O Nicolitch , M Feucherolles , J.-L Churin , Laure Fauchery , M.-P Turpault et al.
Scientific Reports, 2019, 9, ⟨10.1038/s41598-019-50730-y⟩
Article dans une revue hal-02913039 v1

Corrigendum to “Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere” [Syst. Appl. Microbiol. 40 (2017) 345–351]

S. Uroz , Phil M. Oger
Systematic and Applied Microbiology, 2019, 42 (3), pp.423-424. ⟨10.1016/j.syapm.2019.03.001⟩
Article dans une revue hal-02122345 v1
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Orchard Conditions and Fruiting Body Characteristics Drive the Microbiome of the Black Truffle Tuber aestivum

Richard Splivallo , Maryam Vahdatzadeh , Jose G Maciá-Vicente , Virginie Molinier , Martina Peter et al.
Frontiers in Microbiology, 2019, 10, pp.1437. ⟨10.3389/fmicb.2019.01437⟩
Article dans une revue hal-02264371 v1

Impact of soil pedogenesis on the diversity and composition of fungal communities across the California soil chronosequence of Mendocino

P E Courty , Marc Buée , J J T Tech , D Brulé , Yannick Colin et al.
Mycorrhiza, 2018, 28 (4), pp.343-356. ⟨10.1007/s00572-018-0829-9⟩
Article dans une revue hal-01815206 v1

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

Francis Martin , Stéphane Uroz , David Barker
Science, 2017, 356 (6340), pp.1-9. ⟨10.1126/science.aad4501⟩
Article dans une revue hal-01606874 v1

Identification, distribution, and quantification of biominerals in a deciduous forest

Célia Krieger , Christophe Calvaruso , C. Morlot , Stéphane Uroz , L. Salsi et al.
Geobiology, 2017, 15 (2), pp.296-310. ⟨10.1111/gbi.12223⟩
Article dans une revue hal-01594541 v1
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Mineral types and tree species determine the functional and taxonomic structures of forest soil bacterial communities

Yannick Colin , Océane Nicolitch-Café , Marie-Pierre M.-P. Turpault , Stéphane Uroz
Applied and Environmental Microbiology, 2017, 83 (5), pp.e02684-16. ⟨10.1128/AEM.02684-16⟩
Article dans une revue hal-01548673 v1

HqiA, a novel quorum-quenching enzyme which expands the AHL lactonase family

Marta Torres , Stéphane Uroz , Rafael Salto , Laure Fauchery , Emilia Quesada et al.
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-01176-7⟩
Article dans une revue hal-01568881 v1

Soil networks become more connected and take up more carbon as nature restoration progresses.

Elly Morriën , S Emilia Hannula , L Basten Snoek , Nico R Helmsing , Hans Zweers et al.
Nature Communications, 2017, 8, pp.1-10. ⟨10.1038/ncomms14349⟩
Article dans une revue hal-01581635 v1
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Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil

M. Crampon , A. Cébron , F. Portet-Koltalo , S. Uroz , F. Le Derf et al.
Environmental Pollution, 2017, 225, pp.663-673. ⟨10.1016/j.envpol.2017.03.053⟩
Article dans une revue hal-01597866 v1

Tree roots select specific bacterial communities in the subsurface critical zone

Océane Nicolitch , Yannick Colin , Marie-Pierre M.-P. Turpault , Laure Fauchery , Stéphane Uroz
Soil Biology and Biochemistry, 2017, 115, pp.109-123. ⟨10.1016/j.soilbio.2017.07.003⟩
Article dans une revue hal-01683170 v1

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence

Yannick Colin , Océane Nicolitch-Café , J. D. van Nostrand , J Z Zhou , Marie-Pierre M.-P. Turpault et al.
Scientific Reports, 2017, 7 (1), pp.1-17. ⟨10.1038/s41598-017-07639-1⟩
Article dans une revue (article de synthèse) hal-01611454 v1

Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere.

Stéphane Uroz , Phil M. Oger
Systematic and Applied Microbiology, 2017, 40 (6), pp.345-351. ⟨10.1016/j.syapm.2017.05.005⟩
Article dans une revue hal-01644024 v1
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Temporal changes of bacterial communities in the <i>Tuber melanosporum </i> ectomycorrhizosphere during ascocarp development

Aurélie Deveau , Sanjay Antony-Babu , François Le Tacon , Christophe Robin , Pascale Frey-Klett et al.
Mycorrhiza, 2016, 26 (5), pp.389-399. ⟨10.1007/s00572-015-0679-7⟩
Article dans une revue hal-01477465 v1

Soil type determines the distribution of nutrient mobilizing bacterial communities in the rhizosphere of beech trees

Océane Nicolitch-Café , Yannick Colin , Marie-Pierre M.-P. Turpault , Stéphane Uroz
Soil Biology and Biochemistry, 2016, 103, pp.429-445. ⟨10.1016/j.soilbio.2016.09.018⟩
Article dans une revue hal-01490771 v1

Ecology of the forest microbiome: Highlights of temperate and boreal ecosystems

Stéphane Uroz , Marc Buée , Aurélie Deveau , Sophie Mieszkin , Francis Martin
Soil Biology and Biochemistry, 2016, 103, pp.471-488. ⟨10.1016/j.soilbio.2016.09.006⟩
Article dans une revue (article de synthèse) hal-01490075 v1
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Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

S. Uroz , P. Oger , E. Tisserand , A. Cebron , M. -P. Turpault et al.
Scientific Reports, 2016, 6 (1), pp.1-11. ⟨10.1038/srep27756⟩
Article dans une revue hal-01579579 v1

Mineral Type and Solution Chemistry Affect the Structure and Composition of Actively Growing Bacterial Communities as Revealed by Bromodeoxyuridine Immunocapture and 16S rRNA Pyrosequencing

L. Kelly , Yannick Colin , M-P. Turpault , Stephane Uroz
Microbial ecology, 2016, 72 (2), pp.428-442. ⟨10.1007/s00248-016-0774-0⟩
Article dans une revue hal-02916112 v1

Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences

Mathilde Jeanbille , Marc Buée , C. Bach , A. Cebron , P. Frey-Klett et al.
Microbial ecology, 2016, 71 (2), pp.482-493. ⟨10.1007/s00248-015-0669-5⟩
Article dans une revue hal-01579572 v1

Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites

Bruce C. Thomson , Emilie Tisserant , Pierre Plassart , Stéphane Uroz , Rob I. Griffiths et al.
Soil Biology and Biochemistry, 2015, 88, pp.403-413. ⟨10.1016/j.soilbio.2015.06.012⟩
Article dans une revue hal-01269419 v1

The Mineralosphere Concept: Mineralogical Control of the Distribution and Function of Mineral-associated Bacterial Communities

Stephane Uroz , Laura Catherine Kelly , Marie-Pierre M.-P. Turpault , Cendrella Lepleux , Pascale Frey-Klett
Trends in Microbiology, 2015, 23 (12), pp.751 - 762. ⟨10.1016/j.tim.2015.10.004⟩
Article dans une revue hal-01577955 v1

Draft Genome Sequence of Burkholderia sp. Strain PML1(12), an Ectomycorrhizosphere-Inhabiting Bacterium with Effective Mineral-Weathering Ability

Stephane Uroz , Phil Oger
Genome Announcements, 2015, 3 (4), ⟨10.1128/genomeA.00798-15⟩
Article dans une revue hal-02916120 v1
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Highlights on progress in forest soil biology

S. Uroz , A. Bispo , Marc Buée , A. Cebron , Jérôme Cortet et al.
Revue forestière française, 2014, Hors série (2014), 8 p. ⟨10.4267/2042/56266⟩
Article dans une revue hal-01198683 v1

Structure and function of bacterial communities in ageing soils: Insights from the Mendocino ecological staircase

Stéphane Uroz , J. J. Tech , N. A. Sawaya , Pascale Frey-Klett , J. H. J. Leveau
Soil Biology and Biochemistry, 2014, 69, pp.265-274. ⟨10.1016/j.soilbio.2013.11.002⟩
Article dans une revue hal-01268570 v1

Diversity and structure of bacterial communities associated with Phanerochaete chrysosporium during wood decay

Vincent Hervé , Xavier Le Roux , Stéphane Uroz , Éric Gelhaye , Pascale Frey-Klett
Environmental Microbiology, 2014, 16 (7), ⟨10.1111/1462-2920.12347⟩
Article dans une revue istex hal-01010621 v1
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Les bactéries, des partenaires méconnus de la truffe

Aurélie Deveau , Sanjay Antony-Babu , Christophe Robin , François F. Le Tacon , Stéphane S. Uroz et al.
Le Trufficulteur Français, 2014, 87 (2), pp.16
Article dans une revue hal-02639023 v1
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Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles.

Sanjay Antony-Babu , Aurélie Deveau , Joy D. van Nostrand , Jizhong Zhou , François Le Tacon et al.
Environmental Microbiology, 2014, 16 (9), pp.2831-2847. ⟨10.1111/1462-2920.12294⟩
Article dans une revue hal-01270208 v1
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Aperçu des avancées dans le domaine de la biologie des sols forestiers

Stéphane Uroz , Antonio Bispo , Marc Buée , Aurélie Noémie Candice Cebron , J. Cortet et al.
Revue forestière française, 2014, LXVI (4), pp.467-478. ⟨10.4267/2042/56560⟩
Article dans une revue hal-02601314 v1

Increase of apatite dissolution rate by Scots pine roots associated or not with Burkholderia glathei PML1(12)Rp in open-system flow microcosms

Christophe Calvaruso , Marie-Pierre M.-P. Turpault , Pascale Frey-Klett , Stéphane Uroz , Marie-Claire Pierret et al.
Geochimica et Cosmochimica Acta, 2013, 106, pp.287 - 306. ⟨10.1016/j.gca.2012.12.014⟩
Article dans une revue istex hal-01268141 v1

An improved method compatible with metagenomic analyses to extract genomic DNA from soils in Tuber melanosporum orchards

Sanjay Antony-Babu , Chloé Murat , Jean-Pierre Deveaux , François Le Tacon , Pascale Frey-Klett et al.
Journal of Applied Microbiology, 2013, 115 (1), pp.163 - 170. ⟨10.1111/jam.12205⟩
Article dans une revue hal-01268072 v1

Functional Profiling and Distribution of the Forest Soil Bacterial Communities Along the Soil Mycorrhizosphere Continuum

Stéphane S. Uroz , Pierre-Emmanuel Courty , J-Claude J.-C. Pierrat , M. M. Peter , Marc Buée et al.
Microbial ecology, 2013, 66 (2), pp.404 - 415. ⟨10.1007/s00248-013-0199-y⟩
Article dans une revue istex hal-01001500 v1
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Taxonomic and functional diversity of Streptomyces in a forest soil

Cyril Bontemps , Maxime Toussaint , Pierre-Vincent Revol , Laurence Hotel , Mathilde Jeanbille et al.
FEMS Microbiology Letters, 2013, 342 (2), pp.157-167. ⟨10.1111/1574-6968.12126⟩
Article dans une revue hal-01655681 v1
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Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

Stéphane Uroz , Panos Ioannidis , Juliette Lengelle , Aurélie Cébron , Emmanuelle Morin et al.
PLoS ONE, 2013, 8 (2), ⟨10.1371/journal.pone.0055929⟩
Article dans une revue hal-01119698 v1

A short-term mineral amendment impacts the mineral weathering bacterial communities in an acidic forest soil

Cendrella Lepleux , Stéphane Uroz , Christelle Collignon , Jean-Louis Churin , Marie-Pierre M.-P. Turpault et al.
Research in Microbiology, 2013, 164 (7), pp.729 - 739. ⟨10.1016/j.resmic.2013.03.022⟩
Article dans une revue istex hal-01268300 v1

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

Stephane Uroz , P. Oger , E. Morin , P. Frey-Klett
Applied and Environmental Microbiology, 2012, 78 (8), pp. 3020-3024. ⟨10.1128/AEM.06742-11⟩
Article dans une revue hal-02916135 v1

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

Stéphane Uroz , P. Oger , Emmanuelle Morin , P. Frey-Klett
Applied and Environmental Microbiology, 2012, 78 (8), pp.3020 - 3024. ⟨10.1128/AEM.06742-11⟩
Article dans une revue hal-01268355 v1

Minerals Affect the Specific Diversity of Forest Soil Bacterial Communities

Stéphane Uroz , Marie-Pierre M.-P. Turpault , Christine Delaruelle , Louis Mareschal , J-Claude Pierrat et al.
Geomicrobiology Journal, 2012, 29 (1), pp.88 - 98. ⟨10.1080/01490451.2010.523764⟩
Article dans une revue hal-01053135 v1

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

C. Lepleux , M. Turpault , Phil M. Oger , P. Frey-Klett , S. Uroz
Applied and Environmental Microbiology, 2012, 78 (19), pp.7114-7119. ⟨10.1128/AEM.00996-12⟩
Article dans une revue hal-02122800 v1

Minerals Affect the Specific Diversity of Forest Soil Bacterial Communities

Stephane Uroz , M. Turpault , C. Delaruelle , L. Mareschal , J.-C. Pierrat et al.
Geomicrobiology Journal, 2012, 29 (1), pp. 88-98. ⟨10.1080/01490451.2010.523764⟩
Article dans une revue hal-02916136 v1

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

C. Lepleux , M. Turpault , P. Oger , P. Frey-Klett , Stephane Uroz
Applied and Environmental Microbiology, 2012, 78 (19), pp. 7114-7119. ⟨10.1128/AEM.00996-12⟩
Article dans une revue hal-02916134 v1

Laccaria bicolor S238N improves Scots pine mineral nutrition by increasing root nutrient uptake from soil minerals but does not increase mineral weathering (vol 328, pg 145, 2010)

Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Stéphane S. Uroz , Elisabeth Leclerc , Antoine Kies et al.
Plant and Soil, 2011, 346 (1-2), pp.401 - 401. ⟨10.1007/s11104-011-0915-7⟩
Article dans une revue hal-02643917 v1

Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems

Stéphane Uroz , Philippe M. Oger , Cendrella Lepleux , Christelle Collignon , Pascale P. Frey-Klett et al.
Research in Microbiology, 2011, 162 (9), pp.820-831. ⟨10.1016/j.resmic.2011.01.013⟩
Article dans une revue insu-00682028 v1

De la diversité à la fonction des Sols peu anthropisés

S. Uroz , R. Marmeisse , Marc Buée , Y. Dessaux , D. Faure et al.
Biofutur, 2011, 319, pp.39-43
Article dans une revue hal-02958002 v1

Pseudomonas fluorescens BBc6R8 type III secretion mutants no longer promote ectomycorrhizal symbiosis

Angéla Cusano , Peter Burlinson , Aurélie Deveau , Patrice Vion , Stéphane Uroz et al.
Environmental Microbiology Reports, 2011, 3 (2), pp.203-210. ⟨10.1111/j.1758-2229.2010.00209.x⟩
Article dans une revue istex hal-02650375 v1

Seasons differently impact the structure of mineral weathering bacterial communities in beech and spruce stands

C. Collignon , Stephane Uroz , M-P. Turpault , P. Frey-Klett
Soil Biology and Biochemistry, 2011, 43 (10), pp.2012-2022. ⟨10.1016/j.soilbio.2011.05.008⟩
Article dans une revue istex hal-02916140 v1

Linking diversity to function: highlight on the mineral weathering bacteria

Stéphane S. Uroz , Pascale P. Frey-Klett
Central European Journal of Biology, 2011, 6 (5), pp.817-820. ⟨10.2478/s11535-011-0053-5⟩
Article dans une revue hal-02644684 v1

Long term impact of mineral amendment on the distribution of the mineral weathering associated bacterial communities from the beech Scleroderma citrinum ectomycorrhizosphere

Stephane Uroz , M.-P. Turpault , L. van Scholl , B. Palin , P. Frey-Klett
Soil Biology and Biochemistry, 2011, 43 (11), pp.2275-2282. ⟨10.1016/j.soilbio.2011.07.010⟩
Article dans une revue istex hal-02916138 v1

Diversity to the function of low soil anthropised

Stéphane S. Uroz , Roland Marmeisse , Marc Buée , Yves Dessaux , Denis Faure et al.
Biofutur, 2011, 319, pp.39 - 43
Article dans une revue hal-02642096 v1

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

Stéphane Uroz , Marc Buée , Claude Murat , Pascale P. Frey-Klett , Francis Martin
Environmental Microbiology Reports, 2010, 2 (2), pp.281-288. ⟨10.1111/j.1758-2229.2009.00117.x⟩
Article dans une revue istex hal-02667042 v1

Laccaria bicolor S238N improves Scots pine mineral nutrition by increasing root nutrient uptake from soil minerals but does not increase mineral weathering

Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Stéphane Uroz , Elisabeth Leclerc , Antoine Kies et al.
Plant and Soil, 2010, 328 (1-2), pp.145-154. ⟨10.1007/s11104-009-0092-0⟩
Article dans une revue istex hal-02658161 v1

The bacterial genus Collimonas

Johan H. J. Leveau , Stéphane Uroz , Wietse de Boer
Environmental Microbiology, 2010, 12 (2), pp.281-292. ⟨10.1111/j.1462-2920.2009.02010.x⟩
Article dans une revue hal-02658848 v1

The role of ectomycorrhizal communities in forest ecosystem processes

Pierre-Emmanuel Courty , Marc Buée , Abdala Gamby Diedhiou , Pascale P. Frey-Klett , François F. Le Tacon et al.
Soil Biology and Biochemistry, 2010, 42 (5), pp.679-698. ⟨10.1016/j.soilbio.2009.12.006⟩
Article dans une revue istex hal-02663834 v1

Influence of forest trees on the distribution of mineral weathering-associated bacterial communities of the scleroderma citrinum mycorrhizosphere

Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Elisabeth Leclerc , Jacques J. Ranger , Jean J. Garbaye et al.
Applied and Environmental Microbiology, 2010, 76 (14), pp.4780-4787. ⟨10.1128/AEM.03040-09⟩
Article dans une revue hal-02668615 v1

Interactions between mycorrhizal fungi and mycorrhizosphere bacteria during mineral weathering: Budget analysis and bacterial quantification

Nina Koele , Marie-Pierre M.-P. Turpault , Ernst E. Hildebrand , Stéphane Uroz , Pascale P. Frey-Klett
Soil Biology and Biochemistry, 2009, 41 (9), pp.1935-1942. ⟨10.1016/j.soilbio.2009.06.017⟩
Article dans une revue istex hal-02657805 v1

Efficient mineral weathering is a distinctive functional trait of the bacterial genus Collimonas

Stéphane Uroz , Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Alain A. Sarniguet , Wietse de Boer et al.
Soil Biology and Biochemistry, 2009, 41 (10), pp.2178-2186. ⟨10.1016/j.soilbio.2009.07.031⟩
Article dans une revue istex hal-02659896 v1

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

Marc Buée , Marlis Reich , Claude Murat , Emmanuelle Morin , R.H. Nilsson et al.
New Phytologist, 2009, 184 (2), pp.449-456. ⟨10.1111/j.1469-8137.2009.03003.x⟩
Article dans une revue hal-02667034 v1

Quorum Sensing and Quorum Quenching: The Yin and Yang of Bacterial Communication

Stéphane Uroz , Yves Dessaux , Phil M. Oger
ChemBioChem, 2009, 10 (2), pp.205-216. ⟨10.1002/cbic.200800521⟩
Article dans une revue (article de synthèse) istex hal-02122861 v1

Mineral weathering by bacteria: ecology, actors and mechanisms

Stéphane Uroz , Christophe Calvaruso , Marie-Pierre M.-P. Turpault , Pascale P. Frey-Klett
Trends in Microbiology, 2009, 17 (8), pp.378-387. ⟨10.1016/j.tim.2009.05.004⟩
Article dans une revue istex hal-02659297 v1
Image document

A Rhodococcus qsdA-Encoded Enzyme Defines a Novel Class of Large-Spectrum Quorum-Quenching Lactonases

Stéphane S. Uroz , Phil M. Oger , Emilie Chapelle , Marie-Thérèse Adeline , Denis Faure et al.
Applied and Environmental Microbiology, 2008, 74 (5), pp.1357-1366. ⟨10.1128/AEM.02014-07⟩
Article dans une revue hal-02665934 v1

Degradation of N-acyl homoserine lactone quorum sensing signal molecules by forest root-associated fungi

Stéphane Uroz , Jussi Heinonsalo
FEMS Microbiology Ecology, 2008, 65 (2), pp.271-278. ⟨10.1111/j.1574-6941.2008.00477.x⟩
Article dans une revue hal-02656843 v1

Simple microplate assays to measure iron mobilization and oxalate secretion by ectomycorrhizal tree roots

François Rineau , Pierre-Emmanuel Courty , Stéphane Uroz , Marc Buée , Jean J. Garbaye
Soil Biology and Biochemistry, 2008, 40 (9), pp.2460-2463. ⟨10.1016/j.soilbio.2008.03.012⟩
Article dans une revue istex hal-02661229 v1

A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases.

S. Uroz , Philippe M. Oger , E. Chapelle , M.-T. Adeline , D. Faure et al.
Applied and Environmental Microbiology, 2008, 74, pp.1357-1366
Article dans une revue hal-00342712 v1

Effet de la substitution d'essence sur le fonctionnement et la durabilité des écosystèmes forestiers : l'apport des travaux pluridisciplinaires menés en forêt de Breuil Chenue - Morvan

Jacques J. Ranger , Dominique Gelhaye , Séverine Bienaime , M. Bonneau , Pascal Bonnaud et al.
Bourgogne Nature, 2007, pp.45-68
Article dans une revue hal-02664164 v1

Effect of the Mycorrhizosphere on the Genotypic and Metabolic Diversity of the Bacterial Communities Involved in Mineral Weathering in a Forest Soil

Stéphane Uroz , Christophe Calvaruso , Marie-Pierre M.-P. Turpault , J-Claude Pierrat , C Mustin et al.
Applied and Environmental Microbiology, 2007, 73 (9), pp.3019-3027. ⟨10.1128/AEM.00121-07⟩
Article dans une revue hal-01195006 v1

N-acyl homoserine lactones are degraded via an amidolytic activity in Comamonas sp. strain D1.

Stéphane Uroz , Yves Dessaux , Philippe M. Oger , Siri Ram Chhabra , Miguel Cámara et al.
Archives of Microbiology, 2006, 187 (3), pp.249-256. ⟨10.1007/s00203-006-0186-5⟩
Article dans une revue istex hal-00119105 v1

N-hexanoyl-l-homoserine lactone,a mediator of bacterial quorum-sensing regulation,exhibits plant-dependent stability and may be inactivated by germinating Lotus corniculatus seedlings.

Laurie Delalande , Denis Faure , Aurélie Raffoux , Stéphane Uroz , Cathy d'Angelo-Picard et al.
FEMS Microbiology Ecology, 2005, 52, pp.13-20. ⟨10.1016/j.femsec.2004.10.005⟩
Article dans une revue hal-00019093 v1

N-Acylhomoserine lactone quorum-sensing molecules are modified and degraded by Rhodococcus erythropolis W2 by both amidolytic and novel oxidoreductase activities.

Stéphane Uroz , Siri Ram Chhabra , Miguel Cámara , Paul Williams , Philippe M. Oger et al.
Microbiology, 2005, 151 (10), pp.3313-3322. ⟨10.1099/mic.0.27961-0⟩
Article dans une revue hal-00019097 v1

Bacterial populations in the rhizosphere of tobacco plants producing the quorum-sensing signals hexanoyl-homoserine lactone and 3-oxo-hexanoyl-homoserine lactone.

Cathy d'Angelo-Picard , Denis Faure , Aurélien Carlier , Stéphane Uroz , Aurélie Raffoux et al.
FEMS Microbiology Ecology, 2004, 51 (1), pp.19-29. ⟨10.1016/j.femsec.2004.07.008⟩
Article dans une revue istex hal-00122912 v1

The Ti Plasmid of Agrobacterium tumefaciens Harbors an attM-Paralogous Gene, aiiB, Also Encoding N-Acyl Homoserine Lactonase Activity

A. Carlier , Stephane Uroz , B. Smadja , R. Fray , X. Latour et al.
Applied and Environmental Microbiology, 2003, 69 (8), pp.4989-4993. ⟨10.1128/AEM.69.8.4989-4993.2003⟩
Article dans une revue hal-02921665 v1

Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.

Stéphane Uroz , Cathy d'Angelo-Picard , Aurélien Carlier , Miena Elasri , Carine Sicot et al.
Microbiology, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩
Article dans une revue hal-00135468 v1

High-Throughput Screening of Fosmid Libraries for Increased Identification of Novel N-Acyl Homoserine Lactone Degrading Enzymes

Stéphane Uroz , Phil M. Oger
Microbial Environmental Genomics (MEG), 2605, Springer US, pp.227-240, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2871-3_12⟩
Chapitre d'ouvrage hal-04683698 v1
Image document

Precipitation partitioning - Hydrologic highways between microbial communities of the plant microbiome?

John Tolan van Stan , Cindy E. Morris , K Aung , Y Kuzyakov , D Magyar et al.
van Stan John Toland; Gutmann Ethan; Friesen Jan. Precipitation partitioning by vegetation, Springer Nature, pp.229-252, 2020, 978-3-030-29701-5. ⟨10.1007/978-3-030-29702-2_14⟩
Chapitre d'ouvrage hal-02389738 v1

Purification of Fungal High Molecular Weight Genomic DNA from Environmental Samples

Laure Fauchery , Stéphane Uroz , Marc Buée , Annegret Kohler
Fungal Genomics, 1775 (Chapter 3), Humana Press, New York, NY, 2018, Methods in Molecular Biology, 978-1-4939-7803-8. ⟨10.1007/978-1-4939-7804-5_3⟩
Chapitre d'ouvrage hal-01891732 v1

Screening for N-AHSL-Based-Signaling Interfering Enzymes

Stéphane Uroz , Phil M. Oger
METAGENOMICS: METHODS AND PROTOCOLS, 1539 (Chapter 18), Editions Springer, 15 p., 2017, Methods in Molecular Biology, 978-1-4939-6689-9. ⟨10.1007/978-1-4939-6691-2_18⟩
Chapitre d'ouvrage hal-01688921 v1

Preface

Francis Martin , Stéphane S. Uroz
Microbial Environmental Genomics (MEG), 1399, Editions Springer, 321 p., 2016, Methods in Molecular Biology, 978-1-4939-3369-3 978-1-4939-3367-9
Chapitre d'ouvrage hal-02792541 v1

Screening for N-AHSL-Based-Signaling Interfering Enzymes

Stéphane Uroz , Phil M. Oger
Metagenomics. Methods in Molecular Biology (Methods and Protocols), pp.203-217, 2010
Chapitre d'ouvrage hal-02122828 v1

Impact of soil chemistry, nutrient supplements, and fungicides on the health and yield of field-grown processing tomatoes

Nilesh N. Maharaj , Eugene M. Miyao , R. Michael Davis , Stéphane Uroz , Johan H. J. Leveau
oint Conference of the 12th Conference of the European-Foundation-for-Plant-Pathology (EFPP), European foundation for plant pathology.; French Society for Phytopathology., May 2017, Dordrecht, France. pp.14, ⟨10.1007/s10658-018-1572-y⟩
Communication dans un congrès hal-02736999 v1

Black truffles as a model in microbial ecology to analyse fungal-bacterial interactions

Aurélie Deveau , Richard Splivallo , Béatrice Palin , Océane Nicolitch , Annegret Kohler et al.
16th International Symposium on Microbial Ecology, Aug 2016, Montreal, Canada
Communication dans un congrès hal-02948271 v1

Impact of nutrient availability on the diversity, function and functioning of the forest soil bacterial communities: insights from the soil succession of the forest experimental site of Montiers.

Stephane Uroz , Marie-Pierre M.-P. Turpault , Océane Nicolitch , Yannick Colin , Marc Buée et al.
Labex ARBRE conference, Oct 2016, Champenoux, France
Communication dans un congrès hal-03339707 v1

Effect of soil type on the beech fine root distribution

Marie-Pierre M.-P. Turpault , Christophe Calvaruso , Stéphane Uroz , Paul Olivier Redon , Gil Kirchen
Rhizosphere 4 congress, Jun 2015, Maastricht, Netherlands
Communication dans un congrès hal-01269130 v1

Contribution of metagenomics to the study of mineral weathering bacterial communities in forest soils

Stéphane S. Uroz , Marc Buée , Aurélie Cébron , Wietse de Boer , Pascale P. Frey-Klett et al.
MEM days (Meta’omics of the microbial ecosystems), 2014, Paris, France
Communication dans un congrès hal-02796164 v1

Characterisation of Active Forest Soil Bacteria during Mineral Weathering

L-C. Kelly , Stéphane Uroz , Marie-Pierre M.-P. Turpault
Goldschmidt, Aug 2013, Florence, Italy
Communication dans un congrès hal-01269132 v1

Combination of culture-independent and dependent approach reveals positive correlation between abundance of Beta-proteobacteria and mineral weathering in nutrient-poor forest soil

Cendrella Lepleux , Marie-Pierre M.-P. Turpault , P. Oger , Pascale P. Frey-Klett , Stéphane S. Uroz
14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Coppenague, Danemark
Communication dans un congrès hal-02745200 v1

Taxonomic and functional diversity of Streptomyces in a forest soil

Cyril Bontemps , Laurence Hotel , Pierre-Vincent Revol , Mathilde Jeanbille , Stéphane Uroz et al.
Journées Actinomycètes, 2012, Nancy, France
Communication dans un congrès hal-01269133 v1

Metagenomics of the forest soil microbiome: from diversity to function

Stéphane S. Uroz , Marc Buée , Francis Martin , Aurore Coince , Claude Murat et al.
1. EcoFINDERS WP3 workshop : 'Strategies and tools for sampling, DNA extraction, DNA sequencing and bioinformatics, 2011, Nancy, France
Communication dans un congrès hal-02804475 v1

Life as the catalyst of mineral weathering in acidic forest ecosystem

Marie-Pierre M.-P. Turpault , Stéphane S. Uroz , Christophe C. Calvaruso , Christelle Collignon , Louis Mareschal et al.
Goldschmidt 2011, Aug 2011, Prague, Czech Republic
Communication dans un congrès hal-02744525 v1

Identification et suivi des bactéries et gènes impliqués dans l’altération des minéraux et la fertilité des sols forestiers

Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , P. Oger , Christelle Collignon , Wietse de Boer et al.
Colloque FRB 2011, Sep 2011, Montpellier, France
Communication dans un congrès hal-02744770 v1

Optimisation des méthodes de purification de l’ADN fongique de haute qualité pour le séquençage

Laure Fauchery , Igor V. Grigoriev , Stéphane Uroz , Marc Buée , Annegret Kohler et al.
IXe Colloque de l'Association Francophone d'Ecologie Microbienne, Bussang, Nov 2019, Bussang, France
Poster de conférence hal-03340857 v1

Exploration de la diversité des bactéries marines dégradant les macroalgues par marquage isotopique

François Thomas , Nolwen Le Duff , Pascal Riera , Aurélie Cébron , Cédric Leroux et al.
IXème colloque AFEM, Nov 2019, Bussang, France
Poster de conférence hal-03145502 v1
Image document

Molecular mechanisms involved in mineral weathering ability of Collimonas sp. PMB3.1 isolated from the oak-Scleroderma citrinum mycorrhizosphere

Laura Picard , Marie-Pierre M.-P. Turpault , Philippe Oger , Stéphane Uroz
IXe Colloque de l’Association Francophone d’Ecologie Microbienne (AFEM2019), Nov 2019, Bussang (Vosges), France
Poster de conférence hal-04887168 v1

Coopération entre des bactéries solubilisatrices de phosphate et le champignon mycorhizien à arbuscule Rhizophagus irregularis dans la nutrition phosphatée de la pomme de terre

Antoine Sportes , Raphael Boussageon , Diederik van Tuinen , Daniel Wipf , Claude Plassart et al.
IX. Colloque de l'Association Francophone d'Ecologie Microbienne, AFEM 2019, Fonctions et diversité des microbiotes dans les environnements naturels et anthropisés, Nov 2019, Bussang, France. , 2019
Poster de conférence hal-02737605 v1

Diversité taxonomique et fonctionnelle des communautés bactériennes colonisant le duramen et l’aubier du chêne sessile (Quercus petraea) en decomposition

Sophie Mieszkin , Perrine Richet , Catherine Lambrot , Cyrille Bach , Laurent Augusto et al.
IXe Colloque de l'Association Francophone d'Ecologie Microbienne, Nov 2019, Bussang, France
Poster de conférence hal-03340841 v1
Image document

L'aubier et le duramen de chêne sélectionnent des communautés bactériennes taxonomiquement et fonctionnellement différentes au cours de leur décomposition

Sophie Mieszkin , P. Richet , Cyrille Bach , Catherine Lambrot , Laurent Augusto et al.
IXe Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Nov 2019, Bussang, France
Poster de conférence hal-03194922 v1

Forest tree species shape their soil microbiome

Stéphane S. Uroz , Phil Oger , Emilie Tisserand , Aurélie Cébron , Marie-Pierre M.-P. Turpault et al.
Rhizosphere 4 congress, Jun 2015, Maastricht, Netherlands. 2015
Poster de conférence hal-02800245 v1

Impact of soil type on the structure of the microbial communities: Insights from the Montiers-sur-Saulx soil succession

Océane Nicolitch-Café , Mathilde Jeanbille , Marc Buée , Yannick Colin , Marie-Pierre M.-P. Turpault et al.
1. Global Soil Biodiversity Conference : Assessing Soil Biodiversity and its Role for Ecosystem Services, Dec 2014, Dijon, France. 2014
Poster de conférence hal-02792897 v1

Forest tree species shape their soil microbiome

Stéphane S. Uroz , Phil Oger , Emilie Tisserand , Aurélie Cébron , Marie-Pierre M.-P. Turpault et al.
1. Global Soil Biodiversity Conference : Assessing Soil Biodiversity and its Role for Ecosystem Services, Dec 2014, Dijon, France. 2014
Poster de conférence hal-02796803 v1

Caractérisation taxonomique et fonctionnelle des communautés bactériennes associées à la surface des minéraux : Combinaison d’approches non-cultivable et cultivable

Cendrella Lepleux , Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , P. Oger , Pascale P. Frey-Klett
Congrès Ecole Thématique Expert Génomique Environnementale (ETEGE), 2012, Aussois, France. 2012
Poster de conférence hal-02805606 v1

Taxonomic and functional characterization of the mineral associated bacterial communities in forest soil

Cendrella Lepleux , Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , Pascale P. Frey-Klett
Ecology of soil microorganisms: Microbes as important drivers of the soil processes, Apr 2011, Prague, Czech Republic. 2011
Poster de conférence hal-02804405 v1