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stephane uroz

Directeur de Recherche (DR2) Directeur Scientifique et Technique du Labex ARBRE depuis janvier 2022
112
Documents
Affiliations actuelles
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Identifiants chercheurs

Présentation

**BIO:** I received my PhD in Microbial Ecology from the University of Paris XI (Orsay) in 2004 with Yves DESSAUX and Phil OGER as my advisers. My PhD research project was focused on the biological stability of the quorum sensing signal molecules, especially the N-acyl homoserine lactone class based on the hypothesis that these molecules need to be degraded to act as a signal, possibly by bacteria naturally occurring in the soil.To verify this hypothesis, I combined classical microbiology, molecular tools, genetic, biochemistry and chemistry. I performed my PhD in three places : in the lab ‘Interactions Plant Microorganisms’ at the Institute of Plant Sciences (ISV, Gif-sur-Yvette ; adviser : [Yves Dessaux](http://www.isv.cnrs-gif.fr/recherche/yd/yd.html)) ; in the lab of “Sciences de la Terre” at Normal School (ENS, Lyon ; adviser : Phil Oger) and at the Institute of Infections and Immunity at University of Nottingham (Queen’s Medical Centre, Nottingham; advisers: [Paul Williams, Miguel Camara and Siri Ram Chhabra](http://www.nottingham.ac.uk/quorum/))(European Union Marie Curie programme). The 15th of october 2004, I defended my thesis (Jury: P. SIMONET, S. REVERCHON, D. HAAS, M. DUBOW, Y. DESSAUX, P. OGER). The 22th of october 2004, I was hired as Junior Research associate (CR2) in the EFPA (now ECODIV) department of the French National Institute for Agricultural Reasearch (INRA), at the interface between two research units: i) The “Tree microbes interactions” (IAM, UMR1136) unit and ii) the “Biogeochemical cycles in forest ecosystems” (BEF, UR1138) unit. I am member of the Ecogenomic and mineral weathering teams. In January 2009, I became Research associate (CR1). The 24th of februrary 2014, I defended my HDR (Habilitation à diriger des recherches) entitled “Ecology of biotic and abiotic interactions of the forest soil bacterial communities: characterization of the actors, mechanims and related genes” (Jury: C. MOUGEL, P. SIMONET, S. VUILLEMIER, R. MARMEISSE, L. MOULIN, P. LEBLOND, E. GELHAYE, P. OGER and P. FREY-KLETT). I was appointed INRA Research Director (DR2) in december 2014. I was head of the Ecogenomics of interactions team in from January 2020 to december 2021. I was appointed Head of the Cluster[ of Excellence ARBRE (Advanced Research on the Biology of Tree Biology and Forest Ecosystems)](http://mycor.nancy.inra.fr/ARBRE) with Myriam LEGAY and Mathieu PETRISSANS. My main collaborator is **Marie-Pierre TURPAULT** (Geochemist and mineralogist) and Cintia BLANCO NOUCHE (PhD). I am also involved in several projects related to microbial ecology, interactions between bacteria/fungi and signalling between bacteria with the colleagues of the **Ecogenomic team** (**M. BUEE, A. DEVEAU, F.MARTIN, L. AUER, E. MORIN**). **RESEARCH TOPICS:** My current projects, integrated in a more global questioning related to forest ecosystem functioning and sustainability, are linking genomics on model bacterial strains to microbial ecology: - **Forest soil as a reservoir of microbial biodiversity** (specific diversity by monogenic metagenomics, global approach by massive metagenomics and functional metagenomics) - Forest soil as a reservoir of **mineral weathering** bacteria (functional diversity, genetics, genomics link to biogeochemistry and mineralogy) - **Minerals and rocks** as microbial habitats (**mineralosphere**) - Microbial interactions and functions in the **rhizosphere and mycorrhizosphere** (e.g., quorum sensing ; competition) - Impact of **nutrient availability** (inorganic nutrients)/ soil type /tree species on bacterial communities - Impact of **drought** on the distribution and functioning of the bacterial communities - Impact of the microorganisms on the **nutrient cycle** (geomicrobiology) - **Genomics and genetics** of mineral weathering bacteria **COLLABORATIONS :** [Phil Oger](http://geologie.ens-lyon.fr/LST/spip.php?article50) (CNRS-ENS, Lyon), PE Courty (INRAE, Dijon), [Johan H.J. Leveau](http://plantpathology.ucdavis.edu/faculty/leveau/) (Univ. Davis, USA), [Wietse de Boer ](http://www.nioo.knaw.nl/users/wdeboer)(NIOO-KNAW, Netherlands),[ Jussi Heinonsalo](http://www.helsinki.fi/bioscience/myco/staff.htm) (Univ. Helsinki, Finland), Jean Armengaud (CEA-Marcoule, Bagnols-sur-Cèze), Cédric Paris (ENSAIA/UL, Vandoeuvre-les-Nancy).

Publications

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The non-ribosomal peptide synthetase-independent siderophore (NIS) rhizobactin produced by Caballeronia mineralivorans PML1(12) confers the ability to weather minerals

Cintia Blanco Nouche , Cédric Paris , Tiphaine Dhalleine , Philippe Oger , Marie-Pierre Turpault
Applied and Environmental Microbiology, 2023, 89 (10), pp.0045323. ⟨10.1128/aem.00453-23⟩
Article dans une revue hal-04297012v1

Mineral weathering by Collimonas pratensis PMB3(1) as a function of mineral properties, solution chemistry and carbon substrate

Laura Picard , Cintia Blanco Nouche , Carine Cochet , Marie-Pierre Turpault , Stéphane Uroz
npj Materials Degradation, 2023, 7 (1), pp 76. ⟨10.1038/s41529-023-00396-9⟩
Article dans une revue hal-04216176v1
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Scleromatobacter humisilvae gen. nov., sp. nov., a novel bacterium isolated from oak forest soil

Sophie Mieszkin , Blandine Trouche , Julien Ancousture , Youssef Raouf , Stéphane Uroz
International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (3), pp.005793. ⟨10.1099/ijsem.0.005793⟩
Article dans une revue hal-04236566v1

Genomic and transcriptomic characterization of the Collimonas quorum sensing genes and regulon

Stephane Uroz , Océane Geisler , Laure Fauchery , Raphaël Lami , Alice Rodrigues
FEMS Microbiology Ecology, 2022, 98 (11), ⟨10.1093/femsec/fiac100⟩
Article dans une revue hal-03915632v1
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The mineral weathering ability of Collimonas pratensis PMB3(1) involves a Malleobactin-mediated iron acquisition system

Laura Picard , Cédric Paris , Tiphaine Dhalleine , Emmanuelle Morin , Philippe Oger
Environmental Microbiology, 2022, 24 (2), pp. 784-802. ⟨10.1111/1462-2920.15508⟩
Article dans une revue hal-03194986v1
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Recent progress in understanding the ecology and molecular genetics of soil mineral weathering bacteria

Stéphane Uroz , Laura Picard , Marie-Pierre Turpault
Trends in Microbiology, 2022, 30 (9), pp.882-897. ⟨10.1016/j.tim.2022.01.019⟩
Article dans une revue hal-03614493v1
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Identification of a novel type of glucose dehydrogenase involved in the mineral weathering ability of Collimonas pratensis strain PMB3(1)

Laura Picard , Marie-Pierre M.-P. Turpault , P. Oger , Stephane Uroz
FEMS Microbiology Ecology, 2021, 97 (1), pp.fiaa232. ⟨10.1093/femsec/fiaa232⟩
Article dans une revue hal-03000681v1
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Oak decaying wood harbors taxonomically and functionally different bacterial communities in sapwood and heartwood

S. Mieszkin , P. Richet , C. Bach , C. Lambrot , Laurent Augusto
Soil Biology and Biochemistry, 2021, 155, pp.1-12. ⟨10.1016/j.soilbio.2021.108160⟩
Article dans une revue hal-03195736v1
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Forest plant cover and mineral type determine the diversity and composition of mineral-colonizing fungal communities

Y. Colin , M.-P. Turpault , L. Fauchery , Marc Buée , Stéphane Uroz
European Journal of Soil Biology, 2021, 105, pp.103334. ⟨10.1016/j.ejsobi.2021.103334⟩
Article dans une revue hal-03336939v1
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Acidisoma silvae sp. nov. and Acidisoma cellulosilytica sp. nov., Two Acidophilic Bacteria Isolated from Decaying Wood, Hydrolyzing Cellulose and Producing Poly-3-hydroxybutyrate

Sophie Mieszkin , Eva Pouder , Stéphane Uroz , Christelle Simon-Colin , Karine Alain
Microorganisms, 2021, 9 (10), pp.2053. ⟨10.3390/microorganisms9102053⟩
Article dans une revue hal-03357174v1
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Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria

François Thomas , Nolwen Le Duff , Ting-Di Wu , Aurélie Cébron , Stéphane Uroz
The International Society of Microbiologial Ecology Journal, 2021, 15 (10), pp.3062-3075. ⟨10.1038/s41396-021-00987-x⟩
Article dans une revue hal-03220808v1
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Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1(12) and mineral

Stephane Uroz , Laura Picard , Marie-Pierre M.-P. Turpault , Lucas Auer , J. Armengaud
Environmental Microbiology, inPress, 22 (9), pp.3838-3862. ⟨10.1111/1462-2920.15159⟩
Article dans une revue hal-02902180v1
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Draft Genome Sequence of Collimonas pratensis Strain PMB3(1), an Effective Mineral-Weathering and Chitin-Hydrolyzing Bacterial Strain

Laura Picard , Philippe Oger , Marie-Pierre M.-P. Turpault , Stephane Uroz
Microbiology Resource Announcements, 2020, 9 (37), ⟨10.1128/MRA.00601-20⟩
Article dans une revue hal-02939115v1
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Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect

Pierre Plassart , Nicolas Chemidlin Prévost-Bouré , Stéphane Uroz , Samuel S. Dequiedt , Dorothy Stone
Scientific Reports, 2019, 9 (1), pp.1-17. ⟨10.1038/s41598-018-36867-2⟩
Article dans une revue hal-02067245v1
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Plant Symbionts Are Engineers of the Plant-Associated Microbiome

Stéphane Uroz , Pierre-Emmanuel Courty , P. Oger
Trends in Plant Science, 2019, 24 (10), pp.905-916. ⟨10.1016/j.tplants.2019.06.008⟩
Article dans une revue hal-02334474v1

Corrigendum to “Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere” [Syst. Appl. Microbiol. 40 (2017) 345–351]

S. Uroz , Phil M. Oger
Systematic and Applied Microbiology, 2019, 42 (3), pp.423-424. ⟨10.1016/j.syapm.2019.03.001⟩
Article dans une revue hal-02122345v1
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A microcosm approach highlights the response of soil mineral weathering bacterial communities to an increase of K and Mg availability

O Nicolitch , M Feucherolles , J.-L Churin , Laure Fauchery , M.-P Turpault
Scientific Reports, 2019, 9, ⟨10.1038/s41598-019-50730-y⟩
Article dans une revue hal-02913039v1
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Orchard Conditions and Fruiting Body Characteristics Drive the Microbiome of the Black Truffle Tuber aestivum

Richard Splivallo , Maryam Vahdatzadeh , Jose G Maciá-Vicente , Virginie Molinier , Martina Peter
Frontiers in Microbiology, 2019, 10, pp.1437. ⟨10.3389/fmicb.2019.01437⟩
Article dans une revue hal-02264371v1

Impact of soil pedogenesis on the diversity and composition of fungal communities across the California soil chronosequence of Mendocino

P E Courty , Marc Buée , J J T Tech , D Brulé , Yannick Colin
Mycorrhiza, 2018, 28 (4), pp.343-356. ⟨10.1007/s00572-018-0829-9⟩
Article dans une revue hal-01815206v1

HqiA, a novel quorum-quenching enzyme which expands the AHL lactonase family

Marta Torres , Stéphane Uroz , Rafael Salto , Laure Fauchery , Emilia Quesada
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-01176-7⟩
Article dans une revue hal-01568881v1

Tree roots select specific bacterial communities in the subsurface critical zone

Océane Nicolitch , Yannick Colin , Marie-Pierre M.-P. Turpault , Laure Fauchery , Stéphane Uroz
Soil Biology and Biochemistry, 2017, 115, pp.109-123. ⟨10.1016/j.soilbio.2017.07.003⟩
Article dans une revue hal-01683170v1

Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere.

Stéphane Uroz , P. Oger
Systematic and Applied Microbiology, 2017, 40 (6), pp.345-351. ⟨10.1016/j.syapm.2017.05.005⟩
Article dans une revue hal-01644024v1

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence

Yannick Colin , Océane Nicolitch-Café , J. D. van Nostrand , J Z Zhou , Marie-Pierre M.-P. Turpault
Scientific Reports, 2017, 7 (1), pp.1-17. ⟨10.1038/s41598-017-07639-1⟩
Article dans une revue hal-01611454v1
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Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil

M. Crampon , A. Cébron , F. Portet-Koltalo , S. Uroz , F. Le Derf
Environmental Pollution, 2017, 225, pp.663-673. ⟨10.1016/j.envpol.2017.03.053⟩
Article dans une revue hal-01597866v1

Soil networks become more connected and take up more carbon as nature restoration progresses.

Elly Morriën , S Emilia Hannula , L Basten Snoek , Nico R Helmsing , Hans Zweers
Nature Communications, 2017, 8, pp.1-10. ⟨10.1038/ncomms14349⟩
Article dans une revue hal-01581635v1

Identification, distribution, and quantification of biominerals in a deciduous forest

Célia Krieger , Christophe Calvaruso , C. Morlot , Stéphane Uroz , L. Salsi
Geobiology, 2017, 15 (2), pp.296-310. ⟨10.1111/gbi.12223⟩
Article dans une revue hal-01594541v1

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

Francis Martin , Stéphane Uroz , David Barker
Science, 2017, 356 (6340), pp.1-9. ⟨10.1126/science.aad4501⟩
Article dans une revue hal-01606874v1
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Mineral types and tree species determine the functional and taxonomic structures of forest soil bacterial communities

Yannick Colin , Océane Nicolitch-Café , Marie-Pierre M.-P. Turpault , Stéphane Uroz
Applied and Environmental Microbiology, 2017, 83 (5), pp.e02684-16. ⟨10.1128/AEM.02684-16⟩
Article dans une revue hal-01548673v1
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Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

S. Uroz , P. Oger , E. Tisserand , A. Cebron , M. -P. Turpault
Scientific Reports, 2016, 6 (1), pp.1-11. ⟨10.1038/srep27756⟩
Article dans une revue hal-01579579v1

Mineral Type and Solution Chemistry Affect the Structure and Composition of Actively Growing Bacterial Communities as Revealed by Bromodeoxyuridine Immunocapture and 16S rRNA Pyrosequencing

L. Kelly , Yannick Colin , M-P. Turpault , Stephane Uroz
Microbial ecology, 2016, 72 (2), pp.428-442. ⟨10.1007/s00248-016-0774-0⟩
Article dans une revue hal-02916112v1

Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences

M. Jeanbille , Marc Buée , C. Bach , A. Cebron , P. Frey-Klett
Microbial ecology, 2016, 71 (2), pp.482-493. ⟨10.1007/s00248-015-0669-5⟩
Article dans une revue hal-01579572v1
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Temporal changes of bacterial communities in the Tuber melanosporum ectomycorrhizosphere during ascocarp development

Aurélie Deveau , Sanjay Antony-Babu , François Le Tacon , Christophe Robin , Pascale Frey-Klett
Mycorrhiza, 2016, 26 (5), pp.389-399. ⟨10.1007/s00572-015-0679-7⟩
Article dans une revue hal-01477465v1

Ecology of the forest microbiome: Highlights of temperate and boreal ecosystems

Stéphane Uroz , Marc Buée , Aurélie Deveau , Sophie Mieszkin , Francis Martin
Soil Biology and Biochemistry, 2016, 103, pp.471-488. ⟨10.1016/j.soilbio.2016.09.006⟩
Article dans une revue hal-01490075v1

Soil type determines the distribution of nutrient mobilizing bacterial communities in the rhizosphere of beech trees

Océane Nicolitch-Café , Yannick Colin , Marie-Pierre M.-P. Turpault , Stéphane Uroz
Soil Biology and Biochemistry, 2016, 103, pp.429-445. ⟨10.1016/j.soilbio.2016.09.018⟩
Article dans une revue hal-01490771v1

Draft Genome Sequence of Burkholderia sp. Strain PML1(12), an Ectomycorrhizosphere-Inhabiting Bacterium with Effective Mineral-Weathering Ability

Stephane Uroz , Phil Oger
Genome Announcements, 2015, 3 (4), ⟨10.1128/genomeA.00798-15⟩
Article dans une revue hal-02916120v1

The Mineralosphere Concept: Mineralogical Control of the Distribution and Function of Mineral-associated Bacterial Communities

Stephane Uroz , Laura Catherine Kelly , Marie-Pierre M.-P. Turpault , Cendrella Lepleux , Pascale Frey-Klett
Trends in Microbiology, 2015, 23 (12), pp.751 - 762. ⟨10.1016/j.tim.2015.10.004⟩
Article dans une revue hal-01577955v1

Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites

Bruce C. Thomson , Emilie Tisserant , Pierre Plassart , Stéphane Uroz , Rob I. Griffiths
Soil Biology and Biochemistry, 2015, 88, pp.403-413. ⟨10.1016/j.soilbio.2015.06.012⟩
Article dans une revue hal-01269419v1
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Les bactéries, des partenaires méconnus de la truffe

Aurélie Deveau , Sanjay Antony-Babu , Christophe Robin , François F. Le Tacon , Stéphane S. Uroz
Le Trufficulteur Français, 2014, 87 (2), pp.16
Article dans une revue hal-02639023v1
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Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles.

Sanjay Antony-Babu , Aurélie Deveau , Joy D. van Nostrand , Jizhong Zhou , François Le Tacon
Environmental Microbiology, 2014, 16 (9), pp.2831-2847. ⟨10.1111/1462-2920.12294⟩
Article dans une revue hal-01270208v1
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Aperçu des avancées dans le domaine de la biologie des sols forestiers

Stéphane Uroz , Antonio Bispo , Marc Buée , Aurélie Noémie Candice Cebron , J. Cortet
Revue forestière française, 2014, LXVI (4), pp.467-478. ⟨10.4267/2042/56560⟩
Article dans une revue hal-02601314v1
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Highlights on progress in forest soil biology

S. Uroz , A. Bispo , Marc Buée , A. Cebron , J. Cortet
Revue forestière française, 2014, Hors série (2014), 8 p. ⟨10.4267/2042/56266⟩
Article dans une revue hal-01198683v1

Structure and function of bacterial communities in ageing soils: Insights from the Mendocino ecological staircase

Stéphane Uroz , J. J. Tech , N. A. Sawaya , Pascale Frey-Klett , J. H. J. Leveau
Soil Biology and Biochemistry, 2014, 69, pp.265-274. ⟨10.1016/j.soilbio.2013.11.002⟩
Article dans une revue hal-01268570v1

Diversity and structure of bacterial communities associated with Phanerochaete chrysosporium during wood decay

Vincent Hervé , Xavier Le Roux , Stéphane Uroz , Éric Gelhaye , Pascale Frey-Klett
Environmental Microbiology, 2014, 16 (7), ⟨10.1111/1462-2920.12347⟩
Article dans une revue hal-01010621v1
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Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

Stéphane Uroz , Panos Ioannidis , Juliette Lengelle , Aurélie Cébron , Emmanuelle Morin
PLoS ONE, 2013, 8 (2), ⟨10.1371/journal.pone.0055929⟩
Article dans une revue hal-01119698v1

Taxonomic and functional diversity of Streptomyces in a forest soil

Cyril Bontemps , Maxime Toussaint , Pierre-Vincent Revol , Laurence Hotel , Mathilde Jeanbille
FEMS Microbiology Letters, 2013, 342 (2), pp.157 - 167. ⟨10.1111/1574-6968.12126⟩
Article dans une revue hal-01655681v1

A short-term mineral amendment impacts the mineral weathering bacterial communities in an acidic forest soil

Cendrella Lepleux , Stéphane Uroz , Christelle Collignon , Jean-Louis Churin , Marie-Pierre M.-P. Turpault
Research in Microbiology, 2013, 164 (7), pp.729 - 739. ⟨10.1016/j.resmic.2013.03.022⟩
Article dans une revue hal-01268300v1

Increase of apatite dissolution rate by Scots pine roots associated or not with Burkholderia glathei PML1(12)Rp in open-system flow microcosms

Christophe Calvaruso , Marie-Pierre M.-P. Turpault , Pascale Frey-Klett , Stéphane Uroz , Marie-Claire Pierret
Geochimica et Cosmochimica Acta, 2013, 106, pp.287 - 306. ⟨10.1016/j.gca.2012.12.014⟩
Article dans une revue hal-01268141v1

Functional Profiling and Distribution of the Forest Soil Bacterial Communities Along the Soil Mycorrhizosphere Continuum

Stéphane S. Uroz , Pierre-Emmanuel Courty , J-Claude J.-C. Pierrat , M. M. Peter , Marc Buée
Microbial ecology, 2013, 66 (2), pp.404 - 415. ⟨10.1007/s00248-013-0199-y⟩
Article dans une revue hal-01001500v1

An improved method compatible with metagenomic analyses to extract genomic DNA from soils in Tuber melanosporum orchards

Sanjay Antony-Babu , Chloé Murat , Jean-Pierre Deveaux , François Le Tacon , Pascale Frey-Klett
Journal of Applied Microbiology, 2013, 115 (1), pp.163 - 170. ⟨10.1111/jam.12205⟩
Article dans une revue hal-01268072v1

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

C. Lepleux , M. Turpault , Phil M. Oger , P. Frey-Klett , S. Uroz
Applied and Environmental Microbiology, 2012, 78 (19), pp.7114-7119. ⟨10.1128/AEM.00996-12⟩
Article dans une revue hal-02122800v1

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

C. Lepleux , M. Turpault , P. Oger , P. Frey-Klett , Stephane Uroz
Applied and Environmental Microbiology, 2012, 78 (19), pp. 7114-7119. ⟨10.1128/AEM.00996-12⟩
Article dans une revue hal-02916134v1

Minerals Affect the Specific Diversity of Forest Soil Bacterial Communities

Stephane Uroz , M. Turpault , C. Delaruelle , L. Mareschal , J.-C. Pierrat
Geomicrobiology Journal, 2012, 29 (1), pp. 88-98. ⟨10.1080/01490451.2010.523764⟩
Article dans une revue hal-02916136v1

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

Stéphane Uroz , P. Oger , Emmanuelle Morin , P. Frey-Klett
Applied and Environmental Microbiology, 2012, 78 (8), pp.3020 - 3024. ⟨10.1128/AEM.06742-11⟩
Article dans une revue hal-01268355v1

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

Stephane Uroz , P. Oger , E. Morin , P. Frey-Klett
Applied and Environmental Microbiology, 2012, 78 (8), pp. 3020-3024. ⟨10.1128/AEM.06742-11⟩
Article dans une revue hal-02916135v1

Minerals Affect the Specific Diversity of Forest Soil Bacterial Communities

Stéphane Uroz , Marie-Pierre M.-P. Turpault , Christine Delaruelle , Louis Mareschal , J-Claude Pierrat
Geomicrobiology Journal, 2012, 29 (1), pp.88 - 98. ⟨10.1080/01490451.2010.523764⟩
Article dans une revue hal-01053135v1

De la diversité à la fonction des Sols peu anthropisés

S. Uroz , R. Marmeisse , Marc Buée , Y. Dessaux , D. Faure
Biofutur, 2011, 319, pp.39-43
Article dans une revue hal-02958002v1

Pseudomonas fluorescens BBc6R8 type III secretion mutants no longer promote ectomycorrhizal symbiosis

Angéla Cusano , Peter Burlinson , Aurélie Deveau , Patrice Vion , Stéphane Uroz
Environmental Microbiology Reports, 2011, 3 (2), pp.203-210. ⟨10.1111/j.1758-2229.2010.00209.x⟩
Article dans une revue hal-02650375v1

Seasons differently impact the structure of mineral weathering bacterial communities in beech and spruce stands

C. Collignon , Stephane Uroz , M-P. Turpault , P. Frey-Klett
Soil Biology and Biochemistry, 2011, 43 (10), pp.2012-2022. ⟨10.1016/j.soilbio.2011.05.008⟩
Article dans une revue hal-02916140v1

Linking diversity to function: highlight on the mineral weathering bacteria

Stéphane S. Uroz , Pascale P. Frey-Klett
Central European Journal of Biology, 2011, 6 (5), pp.817-820. ⟨10.2478/s11535-011-0053-5⟩
Article dans une revue hal-02644684v1

Long term impact of mineral amendment on the distribution of the mineral weathering associated bacterial communities from the beech Scleroderma citrinum ectomycorrhizosphere

Stephane Uroz , M.-P. Turpault , L. van Scholl , B. Palin , P. Frey-Klett
Soil Biology and Biochemistry, 2011, 43 (11), pp.2275-2282. ⟨10.1016/j.soilbio.2011.07.010⟩
Article dans une revue hal-02916138v1

Diversity to the function of low soil anthropised

Stéphane S. Uroz , Roland Marmeisse , Marc Buée , Yves Dessaux , Denis Faure
Biofutur, 2011, 319, pp.39 - 43
Article dans une revue hal-02642096v1

Laccaria bicolor S238N improves Scots pine mineral nutrition by increasing root nutrient uptake from soil minerals but does not increase mineral weathering (vol 328, pg 145, 2010)

Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Stéphane S. Uroz , Elisabeth Leclerc , Antoine Kies
Plant and Soil, 2011, 346 (1-2), pp.401 - 401. ⟨10.1007/s11104-011-0915-7⟩
Article dans une revue hal-02643917v1

Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems

Stéphane Uroz , Philippe M. Oger , Cendrella Lepleux , Christelle Collignon , Pascale P. Frey-Klett
Research in Microbiology, 2011, 162 (9), pp.820-831. ⟨10.1016/j.resmic.2011.01.013⟩
Article dans une revue insu-00682028v1

The bacterial genus Collimonas

Johan H. J. Leveau , Stéphane Uroz , Wietse de Boer
Environmental Microbiology, 2010, 12 (2), pp.281-292. ⟨10.1111/j.1462-2920.2009.02010.x⟩
Article dans une revue hal-02658848v1

The role of ectomycorrhizal communities in forest ecosystem processes

Pierre-Emmanuel Courty , Marc Buée , Abdala Gamby Diedhiou , Pascale P. Frey-Klett , François F. Le Tacon
Soil Biology and Biochemistry, 2010, 42 (5), pp.679-698. ⟨10.1016/j.soilbio.2009.12.006⟩
Article dans une revue hal-02663834v1

Influence of forest trees on the distribution of mineral weathering-associated bacterial communities of the scleroderma citrinum mycorrhizosphere

Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Elisabeth Leclerc , Jacques J. Ranger , Jean J. Garbaye
Applied and Environmental Microbiology, 2010, 76 (14), pp.4780-4787. ⟨10.1128/AEM.03040-09⟩
Article dans une revue hal-02668615v1

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

Stéphane Uroz , Marc Buée , Claude Murat , Pascale P. Frey-Klett , Francis Martin
Environmental Microbiology Reports, 2010, 2 (2), pp.281-288. ⟨10.1111/j.1758-2229.2009.00117.x⟩
Article dans une revue hal-02667042v1

Laccaria bicolor S238N improves Scots pine mineral nutrition by increasing root nutrient uptake from soil minerals but does not increase mineral weathering

Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Stéphane Uroz , Elisabeth Leclerc , Antoine Kies
Plant and Soil, 2010, 328 (1-2), pp.145-154. ⟨10.1007/s11104-009-0092-0⟩
Article dans une revue hal-02658161v1

Efficient mineral weathering is a distinctive functional trait of the bacterial genus Collimonas

Stéphane Uroz , Christophe C. Calvaruso , Marie-Pierre M.-P. Turpault , Alain A. Sarniguet , Wietse de Boer
Soil Biology and Biochemistry, 2009, 41 (10), pp.2178-2186. ⟨10.1016/j.soilbio.2009.07.031⟩
Article dans une revue hal-02659896v1

Quorum Sensing and Quorum Quenching: The Yin and Yang of Bacterial Communication

Stéphane Uroz , Yves Dessaux , Phil M. Oger
ChemBioChem, 2009, 10 (2), pp.205-216. ⟨10.1002/cbic.200800521⟩
Article dans une revue hal-02122861v1

Mineral weathering by bacteria: ecology, actors and mechanisms

Stéphane Uroz , Christophe Calvaruso , Marie-Pierre M.-P. Turpault , Pascale P. Frey-Klett
Trends in Microbiology, 2009, 17 (8), pp.378-387. ⟨10.1016/j.tim.2009.05.004⟩
Article dans une revue hal-02659297v1

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

Marc Buée , Marlis Reich , Claude Murat , Emmanuelle Morin , R.H. Nilsson
New Phytologist, 2009, 184 (2), pp.449-456. ⟨10.1111/j.1469-8137.2009.03003.x⟩
Article dans une revue hal-02667034v1

Interactions between mycorrhizal fungi and mycorrhizosphere bacteria during mineral weathering: Budget analysis and bacterial quantification

Nina Koele , Marie-Pierre M.-P. Turpault , Ernst E. Hildebrand , Stéphane Uroz , Pascale P. Frey-Klett
Soil Biology and Biochemistry, 2009, 41 (9), pp.1935-1942. ⟨10.1016/j.soilbio.2009.06.017⟩
Article dans une revue hal-02657805v1

Simple microplate assays to measure iron mobilization and oxalate secretion by ectomycorrhizal tree roots

François Rineau , Pierre-Emmanuel Courty , Stéphane Uroz , Marc Buée , Jean J. Garbaye
Soil Biology and Biochemistry, 2008, 40 (9), pp.2460-2463. ⟨10.1016/j.soilbio.2008.03.012⟩
Article dans une revue hal-02661229v1

A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases.

S. Uroz , Philippe M. Oger , E. Chapelle , M.-T. Adeline , D. Faure
Applied and Environmental Microbiology, 2008, 74, pp.1357-1366
Article dans une revue hal-00342712v1
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A Rhodococcus qsdA-Encoded Enzyme Defines a Novel Class of Large-Spectrum Quorum-Quenching Lactonases

Stéphane S. Uroz , Phil M. Oger , Emilie Chapelle , Marie-Thérèse Adeline , Denis Faure
Applied and Environmental Microbiology, 2008, 74 (5), pp.1357-1366. ⟨10.1128/AEM.02014-07⟩
Article dans une revue hal-02665934v1

Degradation of N-acyl homoserine lactone quorum sensing signal molecules by forest root-associated fungi

Stéphane Uroz , Jussi Heinonsalo
FEMS Microbiology Ecology, 2008, 65 (2), pp.271-278. ⟨10.1111/j.1574-6941.2008.00477.x⟩
Article dans une revue hal-02656843v1

Effet de la substitution d'essence sur le fonctionnement et la durabilité des écosystèmes forestiers : l'apport des travaux pluridisciplinaires menés en forêt de Breuil Chenue - Morvan

Jacques J. Ranger , Dominique Gelhaye , Séverine Bienaime , M. Bonneau , Pascal Bonnaud
Bourgogne Nature, 2007, pp.45-68
Article dans une revue hal-02664164v1

Effect of the Mycorrhizosphere on the Genotypic and Metabolic Diversity of the Bacterial Communities Involved in Mineral Weathering in a Forest Soil

Stéphane Uroz , Christophe Calvaruso , Marie-Pierre M.-P. Turpault , J-Claude Pierrat , C Mustin
Applied and Environmental Microbiology, 2007, 73 (9), pp.3019-3027. ⟨10.1128/AEM.00121-07⟩
Article dans une revue hal-01195006v1

N-acyl homoserine lactones are degraded via an amidolytic activity in Comamonas sp. strain D1.

Stéphane Uroz , Yves Dessaux , Philippe M. Oger , Siri Ram Chhabra , Miguel Cámara
Archives of Microbiology, 2006, 187 (3), pp.249-256. ⟨10.1007/s00203-006-0186-5⟩
Article dans une revue hal-00119105v1

N-Acylhomoserine lactone quorum-sensing molecules are modified and degraded by Rhodococcus erythropolis W2 by both amidolytic and novel oxidoreductase activities.

Stéphane Uroz , Siri Ram Chhabra , Miguel Cámara , Paul Williams , Philippe M. Oger
Microbiology, 2005, 151 (10), pp.3313-3322. ⟨10.1099/mic.0.27961-0⟩
Article dans une revue hal-00019097v1

N-hexanoyl-l-homoserine lactone,a mediator of bacterial quorum-sensing regulation,exhibits plant-dependent stability and may be inactivated by germinating Lotus corniculatus seedlings.

Laurie Delalande , Denis Faure , Aurélie Raffoux , Stéphane Uroz , Cathy d'Angelo-Picard
FEMS Microbiology Ecology, 2005, 52, pp.13-20. ⟨10.1016/j.femsec.2004.10.005⟩
Article dans une revue hal-00019093v1

Bacterial populations in the rhizosphere of tobacco plants producing the quorum-sensing signals hexanoyl-homoserine lactone and 3-oxo-hexanoyl-homoserine lactone.

Cathy d'Angelo-Picard , Denis Faure , Aurélien Carlier , Stéphane Uroz , Aurélie Raffoux
FEMS Microbiology Ecology, 2004, 51 (1), pp.19-29. ⟨10.1016/j.femsec.2004.07.008⟩
Article dans une revue hal-00122912v1

The Ti Plasmid of Agrobacterium tumefaciens Harbors an attM-Paralogous Gene, aiiB, Also Encoding N-Acyl Homoserine Lactonase Activity

A. Carlier , Stephane Uroz , B. Smadja , R. Fray , X. Latour
Applied and Environmental Microbiology, 2003, 69 (8), pp.4989-4993. ⟨10.1128/AEM.69.8.4989-4993.2003⟩
Article dans une revue hal-02921665v1

Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.

Stéphane Uroz , Cathy d'Angelo-Picard , Aurélien Carlier , Miena Elasri , Carine Sicot
Microbiology, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩
Article dans une revue hal-00135468v1
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Precipitation partitioning - Hydrologic highways between microbial communities of the plant microbiome?

John Tolan van Stan , Cindy E. Morris , K Aung , Y Kuzyakov , D Magyar
van Stan John Toland; Gutmann Ethan; Friesen Jan. Precipitation partitioning by vegetation, Springer Nature, pp.229-252, 2020, 978-3-030-29701-5. ⟨10.1007/978-3-030-29702-2_14⟩
Chapitre d'ouvrage hal-02389738v1

Purification of Fungal High Molecular Weight Genomic DNA from Environmental Samples

Laure Fauchery , Stéphane Uroz , Marc Buée , Annegret Kohler
Fungal Genomics, 1775 (Chapter 3), Humana Press, New York, NY, 2018, Methods in Molecular Biology, 978-1-4939-7803-8. ⟨10.1007/978-1-4939-7804-5_3⟩
Chapitre d'ouvrage hal-01891732v1

Screening for N-AHSL-Based-Signaling Interfering Enzymes

Stéphane Uroz , Phil M. Oger
METAGENOMICS: METHODS AND PROTOCOLS, 1539 (Chapter 18), Editions Springer, 15 p., 2017, Methods in Molecular Biology, 978-1-4939-6689-9. ⟨10.1007/978-1-4939-6691-2_18⟩
Chapitre d'ouvrage hal-01688921v1

Preface

Francis Martin , Stéphane S. Uroz
Microbial Environmental Genomics (MEG), 1399, Editions Springer, 321 p., 2016, Methods in Molecular Biology, 978-1-4939-3369-3 978-1-4939-3367-9
Chapitre d'ouvrage hal-02792541v1

Screening for N-AHSL-Based-Signaling Interfering Enzymes

Stéphane Uroz , Phil M. Oger
Metagenomics. Methods in Molecular Biology (Methods and Protocols), pp.203-217, 2010
Chapitre d'ouvrage hal-02122828v1

Impact of soil chemistry, nutrient supplements, and fungicides on the health and yield of field-grown processing tomatoes

Nilesh N. Maharaj , Eugene M. Miyao , R. Michael Davis , Stéphane Uroz , Johan H. J. Leveau
oint Conference of the 12th Conference of the European-Foundation-for-Plant-Pathology (EFPP), European foundation for plant pathology.; French Society for Phytopathology., May 2017, Dordrecht, France. pp.14, ⟨10.1007/s10658-018-1572-y⟩
Communication dans un congrès hal-02736999v1

Black truffles as a model in microbial ecology to analyse fungal-bacterial interactions

Aurélie Deveau , Richard Splivallo , Béatrice Palin , Océane Nicolitch , Annegret Kohler
16th International Symposium on Microbial Ecology, Aug 2016, Montreal, Canada
Communication dans un congrès hal-02948271v1

Impact of nutrient availability on the diversity, function and functioning of the forest soil bacterial communities: insights from the soil succession of the forest experimental site of Montiers.

Stephane Uroz , Marie-Pierre M.-P. Turpault , Océane Nicolitch , Yannick Colin , Marc Buée
Labex ARBRE conference, Oct 2016, Champenoux, France
Communication dans un congrès hal-03339707v1

Effect of soil type on the beech fine root distribution

Marie-Pierre M.-P. Turpault , Christophe Calvaruso , Stéphane Uroz , Paul Olivier Redon , Gil Kirchen
Rhizosphere 4 congress, Jun 2015, Maastricht, Netherlands
Communication dans un congrès hal-01269130v1

Contribution of metagenomics to the study of mineral weathering bacterial communities in forest soils

Stéphane S. Uroz , Marc Buée , Aurélie Cébron , Wietse de Boer , Pascale P. Frey-Klett
MEM days (Meta’omics of the microbial ecosystems), 2014, Paris, France
Communication dans un congrès hal-02796164v1

Characterisation of Active Forest Soil Bacteria during Mineral Weathering

L-C. Kelly , Stéphane Uroz , Marie-Pierre M.-P. Turpault
Goldschmidt, Aug 2013, Florence, Italy
Communication dans un congrès hal-01269132v1

Taxonomic and functional diversity of Streptomyces in a forest soil

Cyril Bontemps , Laurence Hotel , Pierre-Vincent Revol , Mathilde Jeanbille , Stéphane Uroz
Journées Actinomycètes, 2012, Nancy, France
Communication dans un congrès hal-01269133v1

Combination of culture-independent and dependent approach reveals positive correlation between abundance of Beta-proteobacteria and mineral weathering in nutrient-poor forest soil

Cendrella Lepleux , Marie-Pierre M.-P. Turpault , P. Oger , Pascale P. Frey-Klett , Stéphane S. Uroz
14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Coppenague, Danemark
Communication dans un congrès hal-02745200v1

Metagenomics of the forest soil microbiome: from diversity to function

Stéphane S. Uroz , Marc Buée , Francis Martin , Aurore Coince , Claude Murat
1. EcoFINDERS WP3 workshop : 'Strategies and tools for sampling, DNA extraction, DNA sequencing and bioinformatics, 2011, Nancy, France
Communication dans un congrès hal-02804475v1

Identification et suivi des bactéries et gènes impliqués dans l’altération des minéraux et la fertilité des sols forestiers

Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , P. Oger , Christelle Collignon , Wietse de Boer
Colloque FRB 2011, Sep 2011, Montpellier, France
Communication dans un congrès hal-02744770v1

Life as the catalyst of mineral weathering in acidic forest ecosystem

Marie-Pierre M.-P. Turpault , Stéphane S. Uroz , Christophe C. Calvaruso , Christelle Collignon , Louis Mareschal
Goldschmidt 2011, Aug 2011, Prague, Czech Republic
Communication dans un congrès hal-02744525v1

Exploration de la diversité des bactéries marines dégradant les macroalgues par marquage isotopique

François Thomas , Nolwen Le Duff , Pascal Riera , Aurélie Cébron , Cédric Leroux
IXème colloque AFEM, Nov 2019, Bussang, France
Poster de conférence hal-03145502v1

Coopération entre des bactéries solubilisatrices de phosphate et le champignon mycorhizien à arbuscule Rhizophagus irregularis dans la nutrition phosphatée de la pomme de terre

Antoine Sportes , Raphael Boussageon , Diederik van Tuinen , Daniel Wipf , Claude Plassart
IX. Colloque de l'Association Francophone d'Ecologie Microbienne, AFEM 2019, Fonctions et diversité des microbiotes dans les environnements naturels et anthropisés, Nov 2019, Bussang, France. , 2019
Poster de conférence hal-02737605v1
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L'aubier et le duramen de chêne sélectionnent des communautés bactériennes taxonomiquement et fonctionnellement différentes au cours de leur décomposition

Sophie Mieszkin , P. Richet , Cyrille Bach , Catherine Lambrot , Laurent Augusto
IXe Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Nov 2019, Bussang, France
Poster de conférence hal-03194922v1

Diversité taxonomique et fonctionnelle des communautés bactériennes colonisant le duramen et l’aubier du chêne sessile (Quercus petraea) en decomposition

Sophie Mieszkin , Perrine Richet , Catherine Lambrot , Cyrille Bach , Laurent Augusto
IXe Colloque de l'Association Francophone d'Ecologie Microbienne, Nov 2019, Bussang, France
Poster de conférence hal-03340841v1

Optimisation des méthodes de purification de l’ADN fongique de haute qualité pour le séquençage

Laure Fauchery , Igor V. Grigoriev , Stéphane Uroz , Marc Buée , Annegret Kohler
IXe Colloque de l'Association Francophone d'Ecologie Microbienne, Bussang, Nov 2019, Bussang, France
Poster de conférence hal-03340857v1

Forest tree species shape their soil microbiome

Stéphane S. Uroz , Phil Oger , Emilie Tisserand , Aurélie Cébron , Marie-Pierre M.-P. Turpault
Rhizosphere 4 congress, Jun 2015, Maastricht, Netherlands. 2015
Poster de conférence hal-02800245v1

Forest tree species shape their soil microbiome

Stéphane S. Uroz , Phil Oger , Emilie Tisserand , Aurélie Cébron , Marie-Pierre M.-P. Turpault
1. Global Soil Biodiversity Conference : Assessing Soil Biodiversity and its Role for Ecosystem Services, Dec 2014, Dijon, France. 2014
Poster de conférence hal-02796803v1

Impact of soil type on the structure of the microbial communities: Insights from the Montiers-sur-Saulx soil succession

Océane Nicolitch-Café , Mathilde Jeanbille , Marc Buée , Yannick Colin , Marie-Pierre M.-P. Turpault
1. Global Soil Biodiversity Conference : Assessing Soil Biodiversity and its Role for Ecosystem Services, Dec 2014, Dijon, France. 2014
Poster de conférence hal-02792897v1

Caractérisation taxonomique et fonctionnelle des communautés bactériennes associées à la surface des minéraux : Combinaison d’approches non-cultivable et cultivable

Cendrella Lepleux , Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , P. Oger , Pascale P. Frey-Klett
Congrès Ecole Thématique Expert Génomique Environnementale (ETEGE), 2012, Aussois, France. 2012
Poster de conférence hal-02805606v1

Taxonomic and functional characterization of the mineral associated bacterial communities in forest soil

Cendrella Lepleux , Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , Pascale P. Frey-Klett
Ecology of soil microorganisms: Microbes as important drivers of the soil processes, Apr 2011, Prague, Czech Republic. 2011
Poster de conférence hal-02804405v1