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stephanie bocs

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Three founding ancestral genomes involved in the origin of sugarcane

Nicolas Pompidor , Carine Charron , Catherine Hervouet , Stéphanie Bocs , Gaëtan Droc et al.
Annals of Botany, 2021, 127 (6), pp.827-840. ⟨10.1093/aob/mcab008⟩
Journal articles hal-03273957v1
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RapGreen, an interactive software and web package to explore and analyze phylogenetic trees

Jean-François Dufayard , Stéphanie Bocs , Valentin Guignon , Delphine Larivière , Alexandra Louis et al.
NAR Genomics and Bioinformatics, 2021, 3 (3), 6 p. ⟨10.1093/nargab/lqab088⟩
Journal articles hal-03541670v1
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Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance

Yaodong Yang , Stéphanie Bocs , Haikuo Fan , Alix Armero , Luc Baudouin et al.
Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-020-01593-x⟩
Journal articles hal-03161818v1

Analysis of the allelic variation in the Shell gene homolog of E. oleifera and design of species specific Shell primers

Maider Astorkia , Monica Hernandez , Stéphanie Bocs , Kevin Ponce , Olga Leon et al.
Euphytica, 2020, 216 (1), pp.1-16. ⟨10.1007/s10681-019-2538-7⟩
Journal articles hal-02623528v1
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Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses

Lauriane Hennet , Angélique Berger , Noemi Trabanco , Emeline Ricciuti , Jean-François Dufayard et al.
Frontiers in Plant Science, 2020, 11, 19 p. ⟨10.3389/fpls.2020.00224⟩
Journal articles hal-02542105v1

Detection of significant SNP associated with production and oil quality traits in interspecific oil palm hybrids using RARSeq

Maider Astorkia , Monica Hernandez , Stéphanie Bocs , Kevin Ponce , Olga Leon et al.
Plant Science, 2020, 291, pp.1-13. ⟨10.1016/j.plantsci.2019.110366⟩
Journal articles hal-02623158v1
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Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in Hevea brasiliensis

Shuangyang Wu , Romain Guyot , Stéphanie Bocs , Gaëtan Droc , Fetrina Oktavia et al.
International Journal of Molecular Sciences, 2020, 21 (12), pp.4220. ⟨10.3390/ijms21124220⟩
Journal articles hal-02923368v1
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Association Mapping between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids

Maider Astorkia , Monica Hernandez , Stéphanie Bocs , Emma Lopez de Armentia , Ana Herrán et al.
Plants, 2019, 8 (10), pp.1-19. ⟨10.3390/plants8100377⟩
Journal articles hal-02620626v1
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Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii)

Julia Soewarto , Chantal Hamelin , Stéphanie Bocs , Pierre Mournet , Hélène Vignes et al.
Data in Brief, 2019, 22, pp.794 - 811. ⟨10.1016/j.dib.2018.12.080⟩
Journal articles hal-02618244v1

Impact of Austropuccinia psidii in New Caledonia, a biodiversity hotspot

J. Soewarto , F. Carriconde , N. Hugot , S. Bocs , Chantal Hamelin et al.
Forest Pathology, 2018, 48 (2), pp.1-12. ⟨10.1111/efp.12402⟩
Journal articles hal-02626232v1

Genetic effect in leaf and xylem transcriptome variations among Eucalyptus urophylla x grandis hybrids in field conditions

Alexandre Vaillant , Astrid Honvault , Stéphanie Bocs , Maryline Summo , Garel Makouan-Zi et al.
Silvae Genetica, 2018, 67 (1), pp.57-65. ⟨10.2478/sg-2018-0008⟩
Journal articles hal-02621313v1
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Ten steps to get started in Genome Assembly and Annotation

Victoria Dominguez del Angel , Erik Hjerde , Lieven Sterck , Salvadors Capella-Gutierrez , Cedric Notredame et al.
F1000Research, 2018, 7, pp.148-19. ⟨10.12688/f1000research.13598.1⟩
Journal articles hal-01712874v1
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Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut

Alix Armero Villanueva , Luc Baudouin , Stéphanie Bocs , Dominique This
PLoS ONE, 2017, 12 (3), ⟨10.1371/journal.pone.0173300⟩
Journal articles hal-01605878v1
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The genome draft of coconut (Cocos nucifera)

Yong Xiao , Pengwei Xu , Haikuo Fan , Luc Baudouin , Wei Xia et al.
GigaScience, 2017, 6 (11), ⟨10.1093/gigascience/gix095⟩
Journal articles hal-02629356v1
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The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics

Valentin Guignon , Yann Hueber , Mathieu Rouard , Stéphanie Bocs , David Couvin et al.
Current Plant Biology, 2016, 7-8, pp.6-9. ⟨10.1016/j.cpb.2016.12.002⟩
Journal articles hal-02631148v1
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The coffee genome hub: a resource for coffee genomes

Alexis Dereeper , Stéphanie Bocs , Mathieu Rouard , Valentin Guignon , Sébastien Ravel et al.
Nucleic Acids Research, 2015, 43 (D1), pp.D1028-D1035. ⟨10.1093/nar/gku1108⟩
Journal articles hal-03219674v1

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

France Denoeud , Lorenzo Carretero-Paulet , Alexis Dereeper , Gaëtan Droc , Romain Guyot et al.
Science, In press, 345 (6201), pp.1181-1184. ⟨10.1126/science.1255274⟩
Journal articles hal-02641562v1
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Three Infectious Viral Species Lying in Wait in the Banana Genome

Matthieu Chabannes , Franc-Christophe Baurens , Pierre-Olivier Duroy , Stéphanie Bocs , Stéphanie Vernerey et al.
Journal of Virology, 2013, 87 (15), pp.8624-8637. ⟨10.1128/JVI.00899-13⟩
Journal articles hal-01313693v1
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Chado controller: advanced annotation management with a community annotation system

Valention Guignon , Gaëtan Droc , Michael M. Alaux , Franc-Christophe Baurens , Olivier Garsmeur et al.
Bioinformatics, 2012, 28 (7), pp.1054-1056. ⟨10.1093/bioinformatics/bts046⟩
Journal articles hal-02651830v1

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.

Angélique d'Hont , France Denoeud , Jean-Marc Aury , Franc-Christophe Baurens , Françoise Carreel et al.
Nature, 2012, 488 (7410), pp.213-7. ⟨10.1038/nature11241⟩
Journal articles hal-00855582v1

The genome of Theobroma cacao.

Xavier Argout , Jerome Salse , Jean-Marc Aury , Mark J Guiltinan , Gaetan Droc et al.
Nature Genetics, 2011, 43 (2), pp.101-8. ⟨10.1038/ng.736⟩
Journal articles hal-00855922v1

AMIGene: Annotation of Microbial Genes

Gregory Nuel , S. Bocs , S. Cruveiller , D. Vellenet , C. Medigue et al.
Progress in Nucleic Acid Research and Molecular Biology, 2003, 13 (31), pp.3723-3726
Journal articles hal-00271511v1
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The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens

Éric Duchaud , Christophe Rusniok , Lionel Frangeul , Carmen Buchrieser , Alain Givaudan et al.
Nature Biotechnology, 2003, 21 (11), pp.1307-1313. ⟨10.1038/nbt886⟩
Journal articles hal-02681540v1
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URGI genome annotation system:an integrated system for structural and functional genome annotation

Joelle J. Amselem , Michael Alaux , Nathalie Choisne , Nicolas Lapalu , Baptiste Brault et al.
12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p
Conference papers hal-01019754v1

GnpAnnot community annotation system: features, qualifiers, values

Stéphanie Sidibe-Bocs , Fabrice Legeai , Gaëtan Droc , Mathieu Rouard , Michael M. Alaux et al.
3. International Biocuration Conference, Apr 2009, Berlin, Germany
Conference papers hal-02758372v1

Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting

Delphine Larivière , David Couvin , Jonathan Lorenzo , Valentin Guignon , Mathieu Rouard et al.
JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 437 p., 2016, JOBIM 2016
Conference poster hal-01595092v1

South Green bioinformatics platform: Update 2015

A. Armero , Franc-Christophe Baurens , Stephanie Bocs , A. Breil , Frederic de Lamotte Guéry et al.
3. Plant Genomics Congress, May 2015, Londres, United Kingdom. Global Engage, 2015, Plant Genomics Congress
Conference poster hal-02739966v1
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Application du système GenFam à la réponse au stress des plantes : intégration de l'identification d'éléments cis spécifiques

Jonathan Lorenzo , Delphine Larivière , Jean-François Dufayard , Dominique This , Stéphanie Bocs et al.
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. Université d'Auvergne, 2015
Conference poster hal-01222440v1