Susete Alves Carvalho

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Documents
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Publications

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Publications

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Rhizocarpon geographicum Lichen Discloses a Highly Diversified Microbiota Carrying Antibiotic Resistance and Persistent Organic Pollutant Tolerance

Alice Miral , Adam Kautsky , Susete Alves Carvalho , Ludovic Cottret , Anne-Yvonne Guillerm-Erckelboudt et al.

Microorganisms, 2022, 10 (9), pp.1859. ⟨10.3390/microorganisms10091859⟩

Article dans une revue hal-04204410v2
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AskoR, A R Package for Easy RNASeq Data Analysis

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval et al.

Proceedings of The 1st International Electronic Conference on Entomology, 2021, ⟨10.3390/iece-10646⟩

Article dans une revue hal-04717074v1
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Comparative transcriptome analysis at the onset of speciation in a mimetic butterfly—The Ithomiini Melinaea marsaeus

Florence Piron-Prunier , Emma Persyn , Fabrice Legeai , Melanie Mcclure , Camille Meslin et al.

Journal of Evolutionary Biology, 2021, 34 (11), pp.1704-1721. ⟨10.1111/jeb.13940⟩

Article dans une revue hal-03381525v1
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SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Gilles Boutet , Susete Alves Carvalho , Matthieu Falque , Pierre Peterlongo , Emeline Lhuillier et al.

BMC Genomics, 2016, 17 (1), pp.121. ⟨10.1186/s12864-016-2447-2⟩

Article dans une revue hal-01275696v1
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De novo construction of a “Gene-space” for diploid plant genome rich in repetitive sequences by an iterative Process of Extraction and Assembly of NGS reads (iPEA protocol) with limited computing resources

Christelle Aluome , Gregoire G. Aubert , Susete Alves Carvalho , Marie-Christine Le Paslier , Judith Burstin et al.

BMC Research Notes, 2016, 9 (1), pp.1-9. ⟨10.1186/s13104-016-1903-z⟩

Article dans une revue hal-02636294v1
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Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Yvan Le Bras , Olivier Collin , Cyril Monjeaud , Vincent Lacroix , Eric Rivals et al.

GigaScience, 2016, 5 (1), ⟨10.1186/s13742-015-0105-2⟩

Article dans une revue hal-01280238v1

Full-length <em>de novo</em> assembly of RNA-seq data in pea (<em>Pisum sativum</em> L.) provides a gene expression atlas and gives insights into root nodulation in this species

Susete Alves Carvalho , Gregoire G. Aubert , Sebastien Carrere , Corinne Cruaud , Anne-Lise Brochot et al.

The Plant Journal, 2015, 84 (1), pp.1-19. ⟨10.1111/tpj.12967⟩

Article dans une revue (article de synthèse) hal-02631162v1
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AskoR, an R package for easy RNA-Seq data analysis.

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval et al.

Journées Ouvertes en Biologie, Informatique et Mathématiques (Jobim), Jun 2023, Tours, France. pp.263, 2018, JOBIM2023. ⟨10.1080/02664763.2018.1454894⟩

Poster de conférence hal-04720296v1
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AskoR, an R package for easy RNA-Seq data analysis illustrated by the analysis of plant/pathogen/microbiote interactions.

Susete Alves Carvalho , Kévin Gazengel , Masanelli Sylvin , Anthony Bretaudeau , Stéphanie Robin et al.

Journées Ouvertes en Biologie, Informatique et Mathématiques (Jobim), Jul 2022, Rennes, France

Poster de conférence hal-04720279v1
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SNP discovery in pea: a powerful tool for academic research and breeding

Gilles Boutet , J. Duarte , Susete Alves Carvalho , Clément Lavaud , Raluca Uricaru et al.

6. International Food Legumes Research Conference (IFLRC VI), Jul 2014, Saskatook, Canada. , 2014

Poster de conférence hal-01208702v1
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Reference-free high-throughput SNP detection in pea: an example of discoSnp usage for a non-model complex genome

Susete Alves Carvalho , Raluca Uricaru , Jorge Duarte , Claire Lemaitre , Nathalie Rivière et al.

ECCB 2014, Sep 2014, Strasbourg, France

Poster de conférence hal-01091184v1
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Recent pea genomic resources will enhance complementary improvement strategies in this crop

Judith Burstin , Susete Alves Carvalho , Nadim N. Tayeh , Christelle Aluome , Virginie Bourion et al.

6. International Food Legumes Research Conference (IFLRC VI), Jul 2014, Saskatoon, Canada. , 225 p., 2014

Poster de conférence hal-02743375v1
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Localisation / Globalisation: Diversity of processes in eight Dairy Basins

Martine Napoleone , Christian Corniaux , Françoise Alavoine-Mornas , Jean-Pierre Boutonnet , Susete Alves Carvalho et al.

64. Annual Meeting of the European Association for Animal Production (EAAP 2013), Aug 2013, Nantes, France. , 2013

Poster de conférence hal-01595621v1
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AskoR, A R Package for Easy RNASeq Data Analysis

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval et al.

IECE 2021 - 1st International Electronic Conference on Entomology, Jul 2021, Virtual, France. pp.1-8, ⟨10.3390/IECE-10646⟩

Communication dans un congrès hal-03347665v1
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Le pois, espèce modèle ?

Judith Burstin , Nadim N. Tayeh , Anthony Klein , Jonathan Kreplak , Françoise Jacquin et al.

1. Rencontres Francophones sur les Légumineuses (RFL1), Institut National de la Recherche Agronomique (INRA). FRA., May 2016, Dijon, France

Communication dans un congrès hal-02741352v1

Pea in the genomic era

Judith Burstin , Susete Alves Carvalho , Christelle Aluome , Nadim Tayeh , Anne-Lise Brochot et al.

Séminaire IFR AIB (Agrobiosciences, Interactions & Biodiversité), Feb 2015, Toulouse, France

Communication dans un congrès hal-01536570v1
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Pea genomic tools for functional and structural approaches

Nadim N. Tayeh , Susete Alves Carvalho , Christelle Aluome , Sébastien Carrere , Jonathan Kreplak et al.

Mendel's legacy - 150 years of the genius of genetics, Masaryk University. CZE., Sep 2015, Brno, Czech Republic

Communication dans un congrès hal-02743963v1

Pea in the genomic era

Susete Alves Carvalho , Christelle Aluome , Gregoire G. Aubert , Corinne Cruaud , Anthony Klein et al.

2. Adam Kondorosi Symposium "Frontiers in Legume Biology",, Dec 2014, Gif-sur-Yvette, France

Communication dans un congrès hal-02797923v1