Thomas Duigou
Publications
Publications
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RetroRules 2026: multi‑dataset combining chemistry and biochemistry for reaction templates2025 |
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Artificial Intelligence Methods and Models for Retro-BiosynthesisAI Methods and Models for (bio)catalysis and Synthetic Biology, Jun 2024, Montpellier, France |
Automated Bio-Production PipelineThe Automated Scientist, Mar 2024, Copenhagen, Denmark |
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Galaxy-SynBioCAD: tools and automated pipelines for Synthetic Biology Design and Metabolic EngineeringJOBIM 2022, Jul 2022, Rennes, France. |
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Galaxy-SynBioCAD: tools and automated pipelines for Synthetic Biology Design and Metabolic EngineeringBioSynSys 2022, Sep 2022, Paris, France. |
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Information processing circuits in cell-free systems: beyond gene expression regulationInternational Conference on Engineering Synthetic Cells and Organelles, May 2023, Minneapolis, MN, USA, United States |
Galaxy-SynBioCAD — An Automated Pipeline for Synthetic Biology Design and EngineeringGlobal BioFoundries Alliance Meeting 2023 (GBA2023), Sep 2023, Copenaghen, Denmark |
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Automated Pipeline for Synthetic Biology Design and EngineeringJBEI seminar series, JBEI (DOE), Oct 2022, Emeryville, CA, United States |
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The Galaxy-SynBioCAD portal: tools and workflows for synthetic biology and metabolic engineeringJournées du PEPI IBIS 2021, Nov 2021, Toulouse, France |
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Biological Design and Engineering By and For machine LearningEngineering, Evolution & Design (SEED), AICHE, Jun 2021, Vitual, United States |
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Design Automation Workflows for Synthetic Biology and Metabolic Engineering: The Galaxy SynBioCAD portalIWBDA, 12th International Workshop on Bio-Design Automation, Bio-Design Automation Consortium (BDAC), Aug 2020, Worcester, MA, United States |
Enzyme discovery: Enzyme selection and pathway designMethods in Enzymology, 608, Elsevier Academic Press Inc., pp.25, 2018, Methods in Enzymology, 978-0-12-815148-8. ⟨10.1016/bs.mie.2018.04.005⟩ |
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Dynamique d'un réseau métabolique avec un modèle à base de contraintes : approche par échantillonnage des trajectoires solutionsBio-Informatique, Biologie Systémique [q-bio.QM]. Université Paris Sud - Paris XI, 2015. Français. ⟨NNT : 2015PA112061⟩ |