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Thomas Duigou

16
Documents

Publications

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The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering

Joan Hérisson , Thomas Duigou , Melchior Du Lac , Kenza Bazi-Kabbaj , Mahnaz Sabeti Azad
Nature Communications, 2022, 13 (1), pp.5082. ⟨10.1038/s41467-022-32661-x⟩
Article dans une revue hal-03649340v2
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PeroxiHUB : a modular cell-free biosensing platform using H2O2 as signal integrator

Paul Soudier , Ana Zúñiga , Thomas Duigou , Peter Voyvodic , Kenza Bazi-Kabbaj
ACS Synthetic Biology, 2022, 11 (8), pp 2578-2588. ⟨10.1021/acssynbio.2c00138⟩
Article dans une revue hal-03649349v2
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Retrorules: a database of reaction rules for engineering biology

Thomas Duigou , Melchior Du Lac , Pablo Carbonell , Jean-Loup Faulon
Nucleic Acids Research, 2019, 47 (D1), pp.1-7. ⟨10.1093/nar/gky940⟩
Article dans une revue hal-02619044v1

Reinforcement learning for bioretrosynthesis

Mathilde Koch , Thomas Duigou , Jean-Loup Faulon
ACS Synthetic Biology, 2019, 9 (1), pp.157-168. ⟨10.1021/acssynbio.9b00447⟩
Article dans une revue hal-02905157v1
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RetroPath2.0: A retrosynthesis workflow for metabolic engineers

Baudoin Delepine , Thomas Duigou , Pablo Carbonell , Jean-Loup Faulon
Metabolic Engineering, 2018, 45, pp.158-170. ⟨10.1016/j.ymben.2017.12.002⟩
Article dans une revue hal-02625929v1
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Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

Mathilde Koch , Thomas Duigou , Pablo Carbonell , Jean-Loup Faulon
Journal of Cheminformatics, 2017, 9, pp.1-17. ⟨10.1186/s13321-017-0252-9⟩
Article dans une revue hal-02623106v1

Galaxy-SynBioCAD — An Automated Pipeline for Synthetic Biology Design and Engineering

Joan Hérisson , Pablo Carbonell , Jean-Loup Faulon , Thomas Duigou
Global BioFoundries Alliance Meeting 2023 (GBA2023), Sep 2023, Copenaghen, Denmark
Communication dans un congrès hal-04351679v1

The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering

Joan Hérisson , Thomas Duigou , Jean-Loup Faulon
IWBDA 14th International Workshop on Bio-Design Automation, Bio-Design Automation Consortium (BDAC), Oct 2022, Paris, France
Communication dans un congrès hal-04275567v1

Automated Pipeline for Synthetic Biology Design and Engineering

Jean-Loup Faulon , Thomas Duigou , Joan Hérisson
JBEI seminar series, JBEI (DOE), Oct 2022, Emeryville, CA, United States
Communication dans un congrès hal-04275834v1

The Galaxy-SynBioCAD portal: tools and workflows for synthetic biology and metabolic engineering

Thomas Duigou , Joan Hérisson , Jean-Loup Faulon , Guillaume Gricourt , Kenza Bazi Kabbaj
Journées du PEPI IBIS 2021, Nov 2021, Toulouse, France
Communication dans un congrès hal-04355490v1

Biological Design and Engineering By and For machine Learning

Léon Faure , Manish Kushwaha , Thomas Duigou , Jean-Loup Faulon
Engineering, Evolution & Design (SEED), AICHE, Jun 2021, Vitual, United States
Communication dans un congrès hal-04275493v1

Design Automation Workflows for Synthetic Biology and Metabolic Engineering: The Galaxy SynBioCAD portal

Melchior Du Lac , Thomas Duigou , Pablo Carbonell , Jean-Loup Faulon
IWBDA, 12th International Workshop on Bio-Design Automation, Bio-Design Automation Consortium (BDAC), Aug 2020, Worcester, MA, United States
Communication dans un congrès hal-04275555v1

Enzyme discovery: Enzyme selection and pathway design

Pablo Carbonell , Mathilde Koch , Thomas Duigou , Jean-Loup Faulon
Methods in Enzymology, 608, Elsevier Academic Press Inc., pp.25, 2018, Methods in Enzymology, 978-0-12-815148-8. ⟨10.1016/bs.mie.2018.04.005⟩
Chapitre d'ouvrage hal-02789661v1