
Thomas Faraut
138
Documents
Publications
Publications
Illustration of a deep learning approach to identify key genomic sequence features of 3D genome organisation25th International Colloquium on Animal Cytogenetics and Genomics, Vincenzo Peretti, Leopoldo Iannuzzi, Andrea Scaloni, Francesca Ciotola, Sara Albarella, Alessandra Iannuzzi, Angela Perucatti, Jun 2024, Naples (Italie), Italy
Communication dans un congrès
hal-04651656
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Detection and characterization of cytogenetic defects in cattle using large genotypic and phenotypic data sets generated for genomic evaluation25th International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jun 2024, Naples, Italy
Communication dans un congrès
hal-04726165
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Improvement of the Bos taurus Genome Assembly using New Sequencing TechnologiesDiscoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France
Communication dans un congrès
hal-04096124
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Variations de structure et longues lecturesColloque INRAE Genomics, INRAE Genomics, May 2022, Orléans, France
Communication dans un congrès
hal-04220082
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A first step towards the characterization of endogenous retroviruses’ evolutionary history and impact on small ruminant genomesCNET 2023 : 24th National Congress on Transposable Elements 2023, The French research community working on transposable elements (CNET), Jul 2023, Perpignan, France
Communication dans un congrès
hal-04728744
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Sex differences in recombination maps are associated with differential hotspot usage in sheepWorld Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands. pp.861-864, ⟨10.3920/978-90-8686-940-4_202⟩
Communication dans un congrès
hal-04065264
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The lariat-derived circRNA from ATXN2L: an outstanding circRNA in pigsEMBO | EMBL Symposium: The Non-Coding Genome, Oct 2021, virtual, Germany
Communication dans un congrès
hal-03445759
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Y-chromosomal haplotypes in domestic and wild goats reveal ancient paternal bottlenecks and recent introgressionsISGC and IGGC Virtual Meeting, Jun 2021, Toulouse-Dunedin, France. pp.886-889, ⟨10.3920/978-90-8686-940-4_208⟩
Communication dans un congrès
hal-03817722
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Circular RNAs detection and cross-species conservationJOBIM 2020 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2020, virtual meeting, France
Communication dans un congrès
hal-03703612
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Pig transcriptome analysis suggests a global regulation mechanism enabling temporary bursts of circular RNAs37. International Society for Animal Genetics Conference (ISAG), Jul 2019, Lleida, Spain
Communication dans un congrès
hal-02788077
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Chromatin accessibility conservation across four livestock speciesConference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Llieda, Spain
Communication dans un congrès
hal-02788732
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Vers une meilleure compréhension des fonctions & des interactions des ARN circulairesJournées Scientifiques du Département Génétique Animale - La Génétique Animale et les Interactions, Oct 2018, Dienné, France
Communication dans un congrès
hal-02785651
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The analysis of sheep and goat genomes reveals new biological mechanisms explaining the variation of Mendelian and complex phenotypesSéminaire mensuel (CRAG), Nov 2018, Barcelone, Spain
Communication dans un congrès
hal-02785242
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Meiotic and gene expression analyses in a case of t(1;15) azoospermic boar23. International Colloquium on Animal Cytogenetics and Genomics (23 ICACG), Jun 2018, Saint-Pétersburg, Russia. 360 p
Communication dans un congrès
hal-02737986
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VarGoats: first results of an international 1000-genome projectInternational Symposium on Environmental and Agronomical Genomics, Nov 2018, Paris, France
Communication dans un congrès
hal-02785613
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Effects of balanced chromosome translocations on boar fertility and cell reprogramming22. International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jul 2016, Toulouse, France. 116p
Communication dans un congrès
hal-02738753
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Genome structural variability in the light of NGS22. International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jul 2016, Toulouse, France. 116 p
Communication dans un congrès
hal-01602943
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De novo Assembly of the Chinese Bamboo-Partridge Genome and Comparison with ChickenPlant and Animal Genome (PAG), Jan 2015, San Diego, United States
Communication dans un congrès
hal-01194054
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Numerous interchromosomal rearrangements in spite of high synteny conservation between duck and chicken21. International Colloquium on Animal Cytogenetics and Gene Mapping, Jun 2014, Ischia, Italy
Communication dans un congrès
hal-02793231
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Improving the Pig Genome Assembly with Mate-Pair SequencingPlant and Animal Genome (PAG), Jan 2014, San Diego, United States
Communication dans un congrès
hal-02739253
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Mapping by RH sequencing: organizing NGS scaffolds into chromosomes21. P!ant and animal genome meeting (PAG XXI), Jan 2013, San Diego, Californie, United States
Communication dans un congrès
hal-02749835
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Detection de SNP chez la caille : production d'un outil commum pour des programmes scientifiques multiples10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). Nouzilly, FRA. Institut National de la Recherche Agronomique (INRA). Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), FRA., Mar 2013, La Rochelle, France
Communication dans un congrès
hal-01190264
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Local score based method on pool-sequenced behaviour-divergent quail lines precisely detected selection signatures related to autism35. Colloque du Petit Pois Déridé, Aug 2013, Marseille, France
Communication dans un congrès
hal-02810860
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Goat genome assembly, availability of an international 50K SNP chip and RH panel: an update of the international goat genome consortium projects20. Conference of the Plant & Animal Genome, Plant & Animal Genome (PAG). USA., Jan 2012, San Diego, United States. 28 diapositives
Communication dans un congrès
hal-01019243
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Towards a high density SNP International Goat ChipPlant and Animal Genome, Jan 2011, San Diégo, United States
Communication dans un congrès
hal-01194170
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Détection de régions génomiques homologues par un algorithme de flots avec coûtsCongrès ROADEF'2010, Société Française de Recherche Opérationnelle et d'Aide à la Décision (SFROAD). FRA., Feb 2010, Toulouse, France. 2 p
Communication dans un congrès
hal-02752130
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Modelling RH maps uncertainty and application to the validation of whole genome assemblies.9th World Congress on Genetics Applied to Livestock Production, 2010, Leipzig, pp.Inconnu
Communication dans un congrès
hal-02813656
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Utilisation dune puce 60 000 SNP pour cartographier finement des QTL affectant des caractères de production, de résistance aux maladies et de comportement chez les ovins16. Rencontres autour des Recherches sur les Ruminants, Dec 2009, Paris, France
Communication dans un congrès
hal-02755058
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High resolution chicken radiation hybrid maps using the IlluminaTM technology.31st Conference of the International Society of Animal Genetics (ISAG), 2008, Amsterdam, pp.Inconnu
Communication dans un congrès
hal-02815790
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Modéliser l'incertitude des cartes d'hybrides irradiés : application à la validation d'assemblage de génomes complets.Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau
Communication dans un congrès
hal-02754669
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ArcAnGe, annotating, representing and comparing animal genomes.Séminaire AGENAE, La Rochelle, Oct 2008, France, pp.Inconnu
Communication dans un congrès
hal-02815778
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Présentation du projet ANR 2008 SheepSNPQTL : utilisation de la puce 60 000 SNP pour la cartographie fine de QTL chez les ovins.Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France
Communication dans un congrès
hal-02813290
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Deux exemples d'épissage alternatif (ASB6 et CRAT) pour montrer l'intérêt de l'étude de ce phénomène chez les espèces d'élevageJournées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau
Communication dans un congrès
hal-02752629
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D'Iccare à Narcisse, une promenade parmi les mythes de la bioinformatique animale.Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau
Communication dans un congrès
hal-02756487
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A SNP detection project using one million reads from WGS libraries produced from one pig from seven different breeds.International Plant & Animal Genomes XV Conference, San Diego, 2007, California, France
Communication dans un congrès
hal-02751166
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Chromosomal rearrangements and comparative mapping.Séminaire Cytogénétique des plantes Clermont-Ferrand, Apr 2007, France, pp.Inconnu
Communication dans un congrès
hal-02811665
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The rat Toxo1 locus directs toxoplasmosis outcome and controls parasite proliferation and spreading by macrophage-dependent mechanismsInconnu, 2006, Inconnu
Communication dans un congrès
hal-02752628
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High resolution mapping of evolutionary breakpoints in pigs17. European Colloquium on Animal Cytogenetics and Gene mapping, June 18-21, 2006, Lisbonne, Portugal
Communication dans un congrès
hal-02813597
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A comparative radiation hybrid map of SSC17 and human homologous chromosomes HSA 20, 8 and 429. International Conference on International Society of Animla Genetics, Sep 2004, Tokyo, Japan
Communication dans un congrès
hal-02761544
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Male and female segregation profiles in two reciprocal translocations t(12;14)(q13;q21) and t(3;15)(q27;q13) in the pig species60th Annual Meeting of the American Society for Reproductive Medicine, Oct 2004, Philadelphia, pp.Inconnu
Communication dans un congrès
hal-02831758
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RH mapping in pig to study evolutionary breakpoints between HSA7 and SSC3, 9 and 1816. European Colloquium on Animal Cytogenetics and Gene Mapping, 2004, Jouy-en-Josas, France
Communication dans un congrès
hal-02827995
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A comparative porcine-human RH map for SSC2 focusing on synteny breakpoints with human16. European Colloquium on Animal Cytogenetics and Gene Mapping, 2004, Jouy-en-Josas, France
Communication dans un congrès
hal-02826042
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Reciprocal translocations in pigs: frequency in the French populations and analysis of their consequences on reproduction abilities of carrier animals11th Internnational Congress on Biotechnology in Animal Reproduction, Sep 2004, Rapotin, pp.Inconnu
Communication dans un congrès
hal-02827383
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Male and female segregation profiles in two reciprocal translocations t(12;14)(q13;q21) and t(3;15)(q27;q13) in pig16th European Colloquium on Animal Cytogenetics and Gene Mapping, 2004, Jouy-en-Josas, France
Communication dans un congrès
hal-02829792
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Promises and lessons from complete genome sequences for comparative mapping.International Workshop on Major Genes and QTL in Sheep and Goat, 2003, Toulouse
Communication dans un congrès
hal-02760525
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A radiation hybrid panel and its use in developing a gene map of the chicken2003 Spring Meeting of the WPSA French Branch., 2003, Inconnu
Communication dans un congrès
hal-02826038
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Integration des cartes humaines et porcines : 623 nouveaux points d'homologieColloque Génomique des animaux d'élevage, Seignosse-le-Penon, May 2003, Seignosse-le-Peignon
Communication dans un congrès
hal-02762328
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Un panel d'hybrides irradiés et son utilisation pour développer une carte des gènes de la poule5èmes Journées de la Recherche Avicole, 2003, Tours, France
Communication dans un congrès
hal-02761067
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A chicken radiation hybrid panel and its use for mapping11th European Poultry Conference, Sep 2002, Bremen, Germany
Communication dans un congrès
hal-02825614
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Exploring endogenous retroviruses in ruminant genomes: They might not be all dead after allBioinformatics and Evolutionary Genomics (ALPHY = ALignments and PHYlogeny), Feb 2025, Villeurbane, France
Poster de conférence
hal-04965269
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Hi-C for the detection and characterization of chromosomal rearrangements in cattle25th International Colloquium on Animal Cytogenetics and Genomics, Jun 2024, Naples (Italie), Italy.
Poster de conférence
hal-04651644
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Small ruminants versus endogenous retroviruses: an evolutive showdown still in progress in the domestic goat genomeInternational congress on transposable elements, Apr 2024, Saint Malo (FR), France
Poster de conférence
hal-04727644
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Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breedsPlant and Genome San Diego 2024, Jan 2024, San Diego, United States
Poster de conférence
hal-04432840
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Structural variants detection and de novo genome assembly of a maize linePlant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence
hal-03541379
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Quelques résultats du programme VarGoats : « 1000 génomes caprins »Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France
Poster de conférence
hal-03812438
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Combiner analyse d’association et génomique fonctionnelle pour la recherche de gènes candidatsJournées scientifiques Département Génétique animale, Sep 2022, Bordeaux, France
Poster de conférence
hal-03936070
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Rétrogènes et variation du nombre de copies chez les ruminantsJournées scientifiques Département Génétique Animale, Sep 2022, Bordeaux, France
Poster de conférence
hal-04225788
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De novo assembly of 90 bovines genomes using PacBio CLR application comparison and optimizationAssemblée générale France Génomique, Jun 2022, Paris, France
Poster de conférence
hal-04590746
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De novo assembling 19 maize inbred lines of the European germplasm63rd Annual Maize Genetics Meeting, Mar 2021, virtuel, United States
Poster de conférence
hal-03539396
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The importance of annotations (reference genome and parent gene) for the study of circRNAsISAG 2021- virtual conference of the International Society for Animal Genetics, Jul 2021, virtual, South Africa.
Poster de conférence
hal-03445792
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Structural variants detection and de novo genome assembly of a Maize lineSMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence
hal-03541316
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De novo assembly of bovine genome using PacBio applicationsSMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence
hal-03541224
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysisPAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020
Poster de conférence
hal-02947690
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the ability to produce exonic circularRNA appears to be mainly linked to the genomic structure of genesRNAtoul 2019, Jun 2019, Toulouse, France. 2019
Poster de conférence
hal-02788016
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Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomesEuropean Conference on Computational Biology (ECCB 2018), Sep 2018, Athènes, Greece. , 2018
Poster de conférence
hal-02784857
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Présentation et premiers résultats du programme 1000 génomes caprins : VarGoatsJournées Scientifiques du Département de Génétique Animale, Oct 2018, Dienné, France
Poster de conférence
hal-03817570
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Local Score Based Method On Pool-Sequenced Behavior-Divergent Quail Lines Precisely Detected Selection Signatures Related To Autism10. World Congress on Genetics Applied to Livestock Production (WCGALP), Aug 2014, Vancouver, Canada. American Society of Animal Science, 2014, 10th Word Congress on Genetics Applied to Livestock Production
Poster de conférence
hal-01194042
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Local Score Based Method On Pool-Sequenced Behavior-Divergent Quail Lines Precisely Detected Selection Signatures Related To AutismJournée Régionale de Bioinformatique et Biostatistique, Génopole Toulouse, Jun 2014, Toulouse, France. 2014
Poster de conférence
hal-01194044
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Evaluation of the porcine Sscrofa10.2 assembly and associated annotations.25. International Conference Genetic Days, Sep 2012, Wroclaw, Poland. 2012
Poster de conférence
hal-02804016
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A genome-wide study of ruminants reveals two endogenous retrovirus families still active in goats2024
Pré-publication, Document de travail
hal-04706314
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Pairwise graph edit distance characterizes the impact of the construction method on pangenome graphs2024
Pré-publication, Document de travail
hal-04871087
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RH mapping by sequencing: chromosome-scale assembly of the duck genome2019
Pré-publication, Document de travail
(preprint/prepublication)
hal-02955250
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A new local score based method applied to behavior-divergent quail lines sequenced in pools precisely detects selection signatures on genes related to autism2015
Pré-publication, Document de travail
(preprint/prepublication)
hal-01194146
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Comparaison et visualisation de graphes de pangénomesUniversité de rennes. 2023, pp.1-38
Rapport
(rapport de recherche)
hal-04213245
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Organisation linéaire du génome et ses variationsSciences du Vivant [q-bio]. Université Toulouse 3, 2019
HDR
tel-04975276
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