Thomas Faraut

154

Documents

Publications

A comprehensive genome-wide scan for parent-of-origin expressed genes in the pig clarifies the conservation landscape of genomic imprinting

Mathilde Perret , Nathalie Iannuccelli , Sophie Leroux , Katia Fève , Patrice Dehais et al.

Genetics Selection Evolution, 2026, 58 (1), pp.18. ⟨10.1186/s12711-026-01031-2⟩

Article dans une revue hal-05560333v1

High-quality chromosome-scale genome assemblies of 29 maize inbred lines of European breeding relevance

Camille Marcuzzo , Clément Birbes , Camille Eché , Arnaud Di Franco , Thomas Faraut et al.

Scientific Data , 2026, 13 (1), pp.715. ⟨10.1038/s41597-026-07055-z⟩

Article dans une revue (data paper) hal-05606755v2

Whole genome short read data from 567 bulls of 14 breeds provides insight into genetic diversity of French cattle

Mekki Boussaha , Camille Eché , Christophe Klopp , Cécile Grohs , Marine Milhes et al.

Data in Brief, 2025, 62, pp.112049. ⟨10.1016/j.dib.2025.112049⟩

Article dans une revue (data paper) hal-05268512v1

Decoupling transcriptome layers: the distinct and variable nature of circular RNAs

María Alonso-García , Laurence Liaubet , Thomas Faraut , Patrice Dehais , Christa Kühn et al.

BMC Biology, 2025, 23 (1), pp.269. ⟨10.1186/s12915-025-02375-9⟩

Article dans une revue hal-05227927v1

Pairwise graph edit distance characterizes the impact of the construction method on pangenome graphs

Siegfried Dubois , Matthias Zytnicki , Claire Lemaitre , Thomas Faraut

Bioinformatics, 2025, 41 (6), pp.btaf291. ⟨10.1101/2024.12.06.627166⟩

Article dans une revue hal-04871087v2

Comprehensive detection of structural variations in long and short reads dataset of French cattle

Maulana Mughitz Naji , Christophe Klopp , Camille Eché , Arnaud Di Franco , Clément Birbes et al.

Scientific Reports, 2025, 15 (1), pp.40758. ⟨10.1038/s41598-025-24477-8⟩

Article dans une revue hal-05391915v1

Particular sequence characteristics induce bias in the detection of polymorphic transposable element insertions

Marie Verneret , van Anthony Le , Thomas Faraut , Jocelyn Turpin , Emmanuelle Lerat

Peer Community Journal, 2025, 5, pp.e63. ⟨10.24072/pcjournal.570⟩

Article dans une revue hal-05107931v1

A genome-wide study of ruminants uncovers two endogenous retrovirus families recently active in goats

Marie Verneret , Caroline Leroux , Thomas Faraut , Vincent Navratil , Emmanuelle Lerat et al.

Mobile DNA, 2025, 16 (1), pp.4. ⟨10.1186/s13100-024-00337-6⟩

Article dans une revue hal-04963611v1

Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets

Jeanlin Jourdain , Harmonie Barasc , Thomas Faraut , Anne Calgaro , Nathalie Bonnet et al.

Genome Research, 2023, 33 (6), pp.957-971. ⟨10.1101/gr.277787.123⟩

Article dans une revue hal-04170739v1

Geographical contrasts of Y‐chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions

Isaäc J Nijman , Benjamin D Rosen , Philippe Bardou , Thomas Faraut , Tristan Cumer et al.

Molecular Ecology, 2022, 17 p. ⟨10.1111/mec.16579⟩

Article dans une revue hal-03722180v1

Correlation networks provide new insights into the architecture of testicular steroid pathways in pigs

Annie Robic , Thomas Faraut , Katia Feve , Sarah Djebali , Armelle Prunier et al.

Genes, 2021, 12 (4), pp.1-19. ⟨10.3390/genes12040551⟩

Article dans une revue hal-03222223v1

VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity

Laure Denoyelle , Estelle Talouarn , Philippe Bardou , Licia Colli , Adriana Alberti et al.

Genetics Selection Evolution, 2021, 53 (1), 14 p. ⟨10.1186/s12711-021-00659-6⟩

Article dans une revue hal-03480970v1

Comparative analysis of the circular transcriptome in muscle, liver, and testis in three livestock species

Annie Robic , Chloé Cerutti , Christa Kühn , Thomas Faraut

Frontiers in Genetics, 2021, 12, ⟨10.3389/fgene.2021.665153⟩

Article dans une revue hal-03264869v1

Unraveling the history of the genus Gallus through whole genome sequencing

Mahendra Mariadassou , Marie Suez , Sanbadam Sathyakumar , Alain Vignal , Mariangela Arca et al.

Molecular Phylogenetics and Evolution, 2021, 158, pp.107044. ⟨10.1016/j.ympev.2020.107044⟩

Article dans une revue hal-03155990v1

Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs

Annie Robic , Thomas Faraut , Sarah Djebali , Rosemarie Weikard , Katia Feve et al.

RNA Biology, 2019, 16, pp.1-15. ⟨10.1080/15476286.2019.1621621⟩

Article dans une revue hal-02622408v1

Multi-species annotation of transcriptome and chromatin structure in domesticated animals

Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau et al.

BMC Biology, 2019, 17 (1), 25 p. ⟨10.1186/s12915-019-0726-5⟩

Article dans une revue hal-02437599v1

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

Hélène Badouin , Jerome Gouzy , Christopher Grassa , Florent Murat , S Evan Staton et al.

Nature, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩

Article dans une revue hal-01603287v1

Accounting for Linkage Disequilibrium in genome scans for selection without individual genotypes: the local score approach

Maria Inès Fariello Rico , Simon Boitard , Sabine Mercier , David Robelin , Thomas Faraut et al.

Molecular Ecology, 2017, 26 (14), pp.3700-3714. ⟨10.1111/mec.14141⟩

Article dans une revue hal-01607837v1

Identification of a t(3;4)(p1.3;q1.5) translocation breakpoint in pigs using somatic cell hybrid mapping and high-resolution mate-pair sequencing

Katia Feve , Sylvain Foissac , Alain Pinton , Florence Mompart , Diane Esquerré et al.

PLoS ONE, 2017, 12 (11), Non paginé. ⟨10.1371/journal.pone.0187617⟩

Article dans une revue hal-02622330v1

Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds

Magali San Cristobal , Florian Rohart , Christine Lascor , Marcel Bouffaud , Lidwine Trouilh et al.

BMC Genomics, 2015, 16, Non paginé. ⟨10.1186/s12864-015-2259-9⟩

Article dans une revue hal-01245970v1

Pathways and genes involved in steroid hormone metabolism in male pigs

Annie Robic , Thomas Faraut , Armelle Prunier

Journal of Steroid Biochemistry and Molecular Biology, 2014, 140, pp.44-55. ⟨10.1016/j.jsbmb.2013.11.001⟩

Article dans une revue istex hal-01210569v1

The sheep genome illuminates biology of the rumen and lipid metabolism

Yu Jiang , Min Xie , Wenbin Chen , Richard Talbot , Jillian F. Maddox et al.

Science, 2014, 344 (6188), pp.1168-1173. ⟨10.1126/science.1252806⟩

Article dans une revue hal-02635391v1

Next-Generation Annotation of Prokaryotic Genomes with EuGene-P: Application to Sinorhizobium meliloti 2011

Erika Sallet , Brice Roux , Laurent Sauviac , M.-F. Jardinaud , S. Carrere et al.

DNA Research, 2013, 20 (4), pp.339-353. ⟨10.1093/dnares/dst014⟩

Article dans une revue hal-03082947v1

Génomique des canards

Alain Vignal , Christian Diot , Caroline Molette , Thomas Faraut , Man Rao et al.

INRA Productions Animales, 2013, 26 (5), pp.391-402

Article dans une revue hal-01207754v1

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

Yang Dong , Min Xie , Yu Jiang , Nianqing Xiao , Xiaoyong Du et al.

Nature Biotechnology, 2013, 31 (2), pp.135-141. ⟨10.1038/nbt.2478⟩

Article dans une revue hal-02651460v1

The duck genome and transcriptome provide insight into an avian influenza virus reservoir species

Yinhua Huang , Yingrui Li , David W Burt , Hualan Chen , Yong Zhang et al.

Nature Genetics, 2013, 45 (7), pp.776-783. ⟨10.1038/ng.2657⟩

Article dans une revue hal-02652041v1

A duck RH panel and its potential for assisting NGS genome assembly

Man Rao , Mireille Morisson , Thomas Faraut , Suzanne Bardes , Katia K. Feve et al.

BMC Genomics, 2012, 13 (september), Non paginé. ⟨10.1186/1471-2164-13-513⟩

Article dans une revue hal-02646793v1

Analyses of pig genomes provide insight into porcine demography and evolution

Martien A. M. Groenen , Alan L. Archibald , Hirohide Uenishi , Christopher K. Tuggle , Yasuhiro Takeuchi et al.

Nature, 2012, 491 (7426), pp.393-398. ⟨10.1038/nature11622⟩

Article dans une revue cea-00880676v1

Detecting long tandem duplications in genomic sequences

Eric Audemard , Thomas Schiex , Thomas Faraut

BMC Bioinformatics, 2012, 13, online (may), Non paginé. ⟨10.1186/1471-2105-13-83⟩

Article dans une revue hal-02650334v1

High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly

Bertrand Servin , Thomas Faraut , Nathalie N. Iannuccelli , Diana Zelenika , Denis Milan

BMC Genomics, 2012, 13, online (november), Non paginé. ⟨10.1186/1471-2164-13-585⟩

Article dans une revue hal-02644217v1

Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: eQTL localized genes involved in stress response, cell death, muscle disorders and metabolism.

Laurence Liaubet , Valérie Lobjois , Thomas Faraut , Aurélie Tircazes , Francis Benne et al.

BMC Genomics, 2011, 12 (november), pp.548. ⟨10.1186/1471-2164-12-548⟩

Article dans une revue hal-00842687v1

Statistical confidence measures for genome maps: application to the validation of genome assemblies

Bertrand Servin , Simon de Givry , Thomas Faraut

Bioinformatics, 2010, 26 (24), pp.3035-3042. ⟨10.1093/bioinformatics/btq598⟩

Article dans une revue hal-02665786v1

Alvira: comparative genomics of viral strains.

François Enault , Romain Fremez , Eric Baranowski , Thomas Faraut

2010, ⟨10.1093/bioinformatics/btm293⟩

Article dans une revue hal-00535599v1

Palaeogenomics of plants: synteny-based modelling of extinct ancestors.

Michael Abrouk , Florent Murat , Caroline Pont , Joachim Messing , Scott Jackson et al.

Trends in Plant Science, 2010, 15 (9), pp.479-87. ⟨10.1016/j.tplants.2010.06.001⟩

Article dans une revue istex hal-00681093v1

The sheep genome reference sequence: a work in progress

. The International Sheep Genomics Consortium , A.L. Archibald , N.E. Cockett , B.P. Dalrymple , Thomas Faraut et al.

Animal Genetics, 2010, 41 (5), pp.449-453. ⟨10.1111/j.1365-2052.2010.02100.x⟩

Article dans une revue istex hal-02668022v1

Is there a leptin gene in the chicken genome? Lessons from phylogenetics, bioinformatics and genomics

Frederique Pitel , Thomas Faraut , Gilles Bruneau , Philippe Monget

General and Comparative Endocrinology, 2010, 167 (1), pp.1-5. ⟨10.1016/j.ygcen.2009.10.006⟩

Article dans une revue istex hal-01129469v1

Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals

Jerome J. Salse , Michaël M. Abrouk , Stéphanie S. Bolot , Nicolas N. Guilhot , Emmanuel E. Courcelle et al.

Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (35), pp.14908-14913. ⟨10.1073/pnas.0902350106⟩

Article dans une revue hal-00964188v1

Contribution of Radiation Hybrids to Genome Mapping in Domestic Animals.

Thomas Faraut , Simon de Givry , Christophe Hitte , Yvette Lahbib Mansais , Mireille Morisson et al.

Cytogenetic and Genome Research, 2009, 126 (1-2), pp.21-33. ⟨10.1159/000245904⟩

Article dans une revue inserm-00442389v1

The carnitine acetyltransferase gene (CRAT): a characterization of porcine transcripts with insights into the 5'-end variants of mammalian transcripts and their possible sub-cellular localization

Annie Robic , Thomas Faraut , Laurence Liaubet , Denis Milan

Cellular and Molecular Biology Letters, 2009, 14 (1), pp.90-99. ⟨10.2478/s11658-008-0036-3⟩

Article dans une revue hal-02663909v1

Addressing chromosome evolution in the whole-genome sequence era.

Thomas Faraut

Chromosome Research, 2008, 16, pp.5-16

Article dans une revue hal-02653333v1

Narcisse: a mirror view of conserved syntenies

Emmanuel E. Courcelle , Yoann Beausse , Sébastien Letort , Olivier Stahl , Julien Fremez et al.

Nucleic Acids Research, 2008, 36 (1), pp.D485-D490. ⟨10.1093/nar/gkm805⟩

Article dans une revue hal-02656575v1

Characterization of porcine ASB6 gene and transcripts - Comparison of mammalian transcripts

Annie Robic , Thomas Faraut , Laurence Liaubet , Juliette Riquet , Denis Milan et al.

Animal Biotechnology, 2008, 19, pp.138-143

Article dans une revue hal-02657001v1

Vers une carte comparée des génomes homme / porc hautement résolutive

Yvette Lahbib Mansais , Denis Milan , Thomas Faraut , Martine M. Yerle

Biofutur, 2007, 26, pp.39-43

Article dans une revue hal-02662738v1

Phylogenetic exploration of bacterial genomic rearrangements.

Romain Fremez , Thomas Faraut , Gwennaële Fichant , Jerome Gouzy , Y. Quentin

Bioinformatics, 2007, 23, pp.1172-1174

Article dans une revue hal-02653698v1

A comparative genome approach to marker ordering

Thomas Faraut , Simon de Givry , Patrick P. Chabrier , Thomas Derrien , Francis Galibert et al.

Bioinformatics, 2007, 23 (2), pp.E50-E56. ⟨10.1093/bioinformatics/btl321⟩

Article dans une revue hal-02667668v1

Genetic and haplotypic structure in 14 European and African cattle breeds

Mathieu M. Gautier , Thomas Faraut , Katayoun Moazami-Goudarzi , Vincent Navratil , Mario Foglio et al.

Genetics, 2007, 177, pp.1059-1070

Article dans une revue hal-02660515v1

Evolutionary breakpoints through a high-resolution comparative map between porcine chromosomes 2 and 16 and human chromosomes

Yvette Lahbib Mansais , Florence Mompart , Denis Milan , Sophie S. Leroux , Thomas Faraut et al.

Genomics, 2006, 88, pp.504-512

Article dans une revue hal-02656467v1

The rat Toxo1 locus directs toxoplasmosis outcome and controls parasite proliferation and spreading by macrophage-dependent mechanisms.

Pierre Cavaillès , Véronique Sergent , Cordelia Bisanz , Olivier Papapietro , Céline Colacios et al.

Proceedings of the National Academy of Sciences of the United States of America, 2006, 103 (3), pp.744-9. ⟨10.1073/pnas.0506643103⟩

Article dans une revue hal-00171244v1

A high-resolution comparative map between pig chromosome 17 and human chromosomes 4, 8, and 20: Identification of synteny breakpoints

Yvette Lahbib Mansais , P. Karlskov-Mortensen , Florence Mompart , Denis Milan , C.B. Jorgensen et al.

Genomics, 2005, 86, pp.405-413

Article dans une revue hal-02670629v1

Comparison of male and female meiotic segregation patterns in translocation heterozygotes : a case study in an animal model (<em>Sus scrofa domestica L</em>.)

Alain Pinton , Thomas Faraut , Martine M. Yerle , Joseph Gruand , F. Pellestor et al.

Human Reproduction, 2005, 20, pp.2476-2482

Article dans une revue hal-02674136v1

A dense comparative gene map between human chromosome 19q13.3 -> q13.4 and a homologous segment of swine chromosome 6.

N. Bosak , R. Yamomoto , S. Fujisaki , Thomas Faraut , S. Kiuchi et al.

Cytogenetic and Genome Research, 2005, 108, pp.317-321

Article dans une revue hal-02678722v1

Comparative mapping of genomes.

Thomas Faraut

Biofutur, 2005, 37, pp.40

Article dans une revue hal-02672330v1

A gene-based radiation hybrid map of chicken microchromosome 14 : comparison to human and alignment to the assembled chicken sequence

Mireille Morisson , Sophie S. Leroux , Carine Jiguet-Jiglaire , Sirine Assaf , Frederique Pitel et al.

Genetics Selection Evolution, 2005, 37, pp.229-251. ⟨10.1051/gse:2004046⟩

Article dans une revue hal-02670446v1

Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse.

Mireille Morisson , C. Jiguet-Jiglaire , Sophie S. Leroux , Thomas Faraut , Suzanne Bardes et al.

Mammalian Genome, 2004, 15, pp.732-739

Article dans une revue hal-02673764v1

A comparative porcine-human RH map for SSC2 focusing on synteny breakpoints with human

Yvette Lahbib Mansais , Florence Mompart , Thomas Faraut , Denis Milan , Martine M. Yerle

Cytogenetic and Genome Research, 2004, 106, pp.11

Article dans une revue hal-02669950v1

A comparative porcine-human RH map for SSC2 focusing on synteny breakpoints with human

Yvette Lahbib Mansais , Florence Mompart , Thomas Faraut , Denis Milan , Martine M. Yerle

Cytogenetic and Genome Research, 2004, 106, pp.11-11

Article dans une revue hal-02673120v1

Male and female segregation profiles in two reciprocal translocations t(12;14)(q13;q21) and t(3;15)(q27;q13) in pig

Alain Pinton , A. Ducos , Martine M. Yerle , Thomas Faraut , F. Pellestor

Cytogenetic and Genome Research, 2004, 106, pp.14-15

Article dans une revue hal-02671512v1

The Iccare web server: an attempt to merge sequence and mapping information for plant and animal species.

C. Müller , M. Denis , Laurent Gentzbittel , Thomas Faraut

Nucleic Acids Research, 2004, 32, pp.W429-W434

Article dans une revue hal-02675844v1

Human cytomegalovirus carries a cell-derived phospholipase A2 required for infectivity.

C. Allal , C. Buisson-Brenac , V. Marion , C. Claudel-Renard , Thomas Faraut et al.

Journal of Virology, 2004, 78, pp.7717-7726

Article dans une revue hal-02674890v1

The cyclic genetic code as a constraint satisfaction problem.

G. Weil , K. Heus , Thomas Faraut , J. Demongeot

Theoretical Computer Science, 2004, 322, pp.313-334

Article dans une revue hal-02673209v1

Male and female segregation profiles in two reciprocal translocations t(12 ; 14)(q13 ; q21) t(3 ; 15)(q27 ; q13) in the pig species

Alain Pinton , A. Ducos , Martine M. Yerle , Thomas Faraut , F. Pellestor

Fertility and Sterility, 2004, 82 (Suppl. 2), pp.S272

Article dans une revue hal-02674861v1

RH mapping in pig to study evolutionary breakpoints between HSA7 and SSC3, 9 and 18

Florence Mompart , Yvette Lahbib Mansais , Thomas Faraut , Denis Milan , Martine M. Yerle

Cytogenetic and Genome Research, 2004, 106, pp.18

Article dans une revue hal-02670370v1

Construction of a high-resolution comparative gene map between swine chromosome region 6q11 -> q21 and human chromosome 19 q-arm by RH mapping of 51 genes.

N. Bosak , Thomas Faraut , S. Mikawa , H. Uenishi , S. Kiuchi et al.

Cytogenetic and Genome Research, 2003, 102, pp.109-115

Article dans une revue hal-02676236v1

A radiation hybrid panel and its use in developing a gene map of the chicken

Mireille Morisson , C. Jiguet-Jiglaire , Alexis Lemiere , Sophie S. Leroux , Thomas Faraut et al.

British Poultry Science, 2003, 44, pp.797-798

Article dans une revue hal-02674651v1

Rearranged gene order between pig and human in a QTL region on SSC 7

Olivier O. Demeure , Christine Renard , Martine M. Yerle , Thomas Faraut , Juliette Riquet et al.

Mammalian Genome, 2003, 14, pp.71-80. ⟨10.1007/s00335-002-3034-1⟩

Article dans une revue istex hal-02679052v1

Enzyme-specific profiles for genome annotation: PRIAM.

C. Claudel-Renard , Claude C. Chevalet , Thomas Faraut , D. Kahn

Nucleic Acids Research, 2003, 31, pp.6633-6639

Article dans une revue hal-02676567v1

A new contribution to the integration of human and porcine genome maps: 623 new points of homology

Annie Robic , Thomas Faraut , Nathalie N. Iannuccelli , Yvette Lahbib Mansais , V. Cantegrel et al.

Cytogenetic and Genome Research, 2003, 102, pp.100-108

Article dans une revue hal-02671887v1

A chicken radiation hybrid panel and its use for mapping

Mireille Morisson , Thomas Faraut , Martine M. Yerle , Alain Vignal

Archiv für Geflügelkunde. Sonderheft, 2002, Special Issue, pp.35

Article dans une revue hal-02675399v1

Cooperation of selection and meiotic mechanisms in the production of imbalances in reciprocal translocations.

Thomas Faraut , M.A. Mermet , J. Demongeot , O. Cohen

Cytogenetics and Cell Genetics, 2000, 88, pp.15-21

Article dans une revue hal-02694908v1

Integrating Structural Variants into Sequence-Based GWAS Using a Pangenome and Imputation Framework in Dairy Cattle

Maulana Mughitz , Valentin Sorin , Cecile Grohs , Sébastien Fritz , Christophe Klopp et al.

Plant and Animal Genome Conference, Jan 2026, San Diego (CA), United States

Communication dans un congrès hal-05537063v1

Integrating structural variants into sequence-based GWAS in dairy cattle using a pangenome and imputation framework

Maulana Mughitz Naji , Valentin Sorin , Cécile Grohs , Sébastien Fritz , Christophe Klopp et al.

13th World Congress on Genetics Applied to Livestock Production, Jul 2026, Madison, United States. 4 p., ⟨10.31274/wcgalp.23840⟩

Communication dans un congrès hal-05698327v1

Les Béta-rétrovirus des petits ruminants : de la génétique aux cancers respiratoires

Riocreux-Verney Benjamin , Marie Verneret , Barbara Gineys , Rémi Diesler , Christine Dolmazon et al.

XXVIII èmes Journées Francophones de Virologie, Société française de virologie, Apr 2026, Toulouse, France

Communication dans un congrès hal-05737881v1

Exploring endogenous retroviruses (ERVs) in ruminant genomes: “They might not be all dead after all”

Marie Verneret , Caroline Leroux , Thomas Faraut , V. Navratil , Jocelyn Turpin et al.

Annual Meeting of the Society for Molecular Biology & Evolution - 2025, Society for Molecular Biology & Evolution, Jul 2025, Beijing, China, China

Communication dans un congrès hal-05737719v1

Updates for Goat SNP Chips

Guilherme Borba Neumann , Andrea Eggen , Andrea Talenti , Anna S Grulikowski , Antonia Noce et al.

The Plant and Animal Genome Conference (PAG), Jan 2025, San Diego, United States

Communication dans un congrès hal-05242474v1

Large-scale population genomics reveals polymorphic insertion profiles of endogenous retroviruses in small ruminants

Marie Verneret , Caroline Leroux , V. Navratil , Thomas Faraut , Jocelyn Turpin et al.

Mobile Genetic Elements, Blair Paul; Vladimir Kapitonov; Irina Arkhipova,; Phoebe Rice; Cedric Feschotte, Aug 2025, Woods Hole, Massachusetts, USA, United States

Communication dans un congrès hal-05737755v1

Illustration of a deep learning approach to identify key genomic sequence features of 3D genome organisation

Thomas Faraut , Nicolas Mary , Anne-Laure Valton , Harmonie Barasc , Anne Calgaro et al.

25th International Colloquium on Animal Cytogenetics and Genomics, Vincenzo Peretti, Leopoldo Iannuzzi, Andrea Scaloni, Francesca Ciotola, Sara Albarella, Alessandra Iannuzzi, Angela Perucatti, Jun 2024, Naples, Italy

Communication dans un congrès hal-04651656v1

Detection and characterization of cytogenetic defects in cattle using large genotypic and phenotypic data sets generated for genomic evaluation

Jeanlin Jourdain , Harmonie Barasc , Sébastien Fritz , Clémentine Escouflaire , Anne Barbat et al.

25th International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jun 2024, Naples, Italy

Communication dans un congrès hal-04726165v1

A first step towards the characterization of endogenous retroviruses’ evolutionary history and impact on small ruminant genomes

Marie Verneret , Caroline Leroux , Vincent Navratil , Thomas Faraut , Emmanuelle Lerat et al.

CNET 2023 : 24th National Congress on Transposable Elements 2023, The French research community working on transposable elements (CNET), Jul 2023, Perpignan, France

Communication dans un congrès hal-04728744v1

Variations de structure et longues lectures

Thomas Faraut

Colloque INRAE Genomics, INRAE Genomics, May 2022, Orléans, France

Communication dans un congrès hal-04220082v1

Improvement of the Bos taurus Genome Assembly using New Sequencing Technologies

Camille Eché , Carole Iampietro , Clement Birbes , Andreea Dreau , Claire Kuchly et al.

Discoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France

Communication dans un congrès hal-04096124v1

Sex differences in recombination maps are associated with differential hotspot usage in sheep

Héléna Vassilief , Mohamed Id Bella , Flavie Tortereau , Dominique Hazard , Thomas Faraut et al.

World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands. pp.861-864, ⟨10.3920/978-90-8686-940-4_202⟩

Communication dans un congrès hal-04065264v1

The lariat-derived circRNA from ATXN2L: an outstanding circRNA in pigs

Annie Robic , Thomas Faraut , Chloé Cerutti , Julie Demars , Christa Kühn

EMBO | EMBL Symposium: The Non-Coding Genome, Oct 2021, virtual, Germany

Communication dans un congrès hal-03445759v1

Y-chromosomal haplotypes in domestic and wild goats reveal ancient paternal bottlenecks and recent introgressions

J.A. Lenstra , Vargoats Consortium , I.J. Nijman , B.D. Rosen , Philippe Bardou et al.

ISGC and IGGC Virtual Meeting, Jun 2021, Toulouse-Dunedin, France. pp.886-889, ⟨10.3920/978-90-8686-940-4_208⟩

Communication dans un congrès hal-03817722v1

Circular RNAs detection and cross-species conservation

Chloé Cerutti , Annie Robic , Thomas Faraut

JOBIM 2020 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2020, virtual meeting, France

Communication dans un congrès hal-03703612v1

Chromatin accessibility conservation across four livestock species

Sarah Djebali Quelen , Sylvain Foissac , Nathalie Vialaneix , Kylie Munyard , Andrea Rau et al.

Conference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Llieda, Spain

Communication dans un congrès hal-02788732v1

Pig transcriptome analysis suggests a global regulation mechanism enabling temporary bursts of circular RNAs

Annie Robic , Katia Feve , Thomas Faraut , Sarah Djebali , R. Weikard et al.

37. International Society for Animal Genetics Conference (ISAG), Jul 2019, Lleida, Spain

Communication dans un congrès hal-02788077v1

The analysis of sheep and goat genomes reveals new biological mechanisms explaining the variation of Mendelian and complex phenotypes

Gwenola Tosser-Klopp , Julie Demars , Laurence Drouilhet , Stéphane Fabre , Thomas Faraut et al.

Séminaire mensuel (CRAG), Nov 2018, Barcelone, Spain

Communication dans un congrès hal-02785242v1

Vers une meilleure compréhension des fonctions & des interactions des ARN circulaires

Annie Robic , Sarah Djebali Quelen , Thomas Faraut

Journées Scientifiques du Département Génétique Animale - La Génétique Animale et les Interactions, Oct 2018, Dienné, France

Communication dans un congrès hal-02785651v1

Meiotic and gene expression analyses in a case of t(1;15) azoospermic boar

Alain Pinton , Anne Calgaro , Nicolas Mary , Harmonie Barasc , Nathalie Bonnet et al.

23. International Colloquium on Animal Cytogenetics and Genomics (23 ICACG), Jun 2018, St Petersbourg, Russia. 360 p

Communication dans un congrès hal-02737986v1

VarGoats: first results of an international 1000-genome project

Gwenola Tosser-Klopp , Philippe Bardou , Laure Denoyelle , Thomas Faraut , Francois Pompanon

International Symposium on Environmental and Agronomical Genomics, Nov 2018, Paris, France

Communication dans un congrès hal-02785613v1

Effects of balanced chromosome translocations on boar fertility and cell reprogramming

Annabelle Congras , Harmonie Barasc , Valentine Marquet , Kamila Canale-Tabet , Emeline Lhuillier et al.

22. International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jul 2016, Toulouse, France. 116p

Communication dans un congrès hal-02738753v1

Genome structural variability in the light of NGS

Thomas Faraut

22. International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jul 2016, Toulouse, France. 116 p

Communication dans un congrès hal-01602943v1

De novo Assembly of the Chinese Bamboo-Partridge Genome and Comparison with Chicken

Gabriel Rognon , Diane Esquerre , Sylvain Foissac , Alain Vignal , Jean-Luc Coville et al.

Plant and Animal Genome (PAG), Jan 2015, San Diego, United States

Communication dans un congrès hal-01194054v1

Improving the Pig Genome Assembly with Mate-Pair Sequencing

Sylvain Foissac , Diane D. Esquerre , Katia K. Feve , Juliette Riquet , Thomas Faraut

Plant and Animal Genome (PAG), Jan 2014, San Diego, United States

Communication dans un congrès hal-02739253v1

Numerous interchromosomal rearrangements in spite of high synteny conservation between duck and chicken

Valerie Fillon , Man Rao , Thomas Faraut , Daren Griffin , Mireille Morisson et al.

21. International Colloquium on Animal Cytogenetics and Gene Mapping, Jun 2014, Ischia, Italy

Communication dans un congrès hal-02793231v1

Detection de SNP chez la caille : production d'un outil commum pour des programmes scientifiques multiples

Sophie Leroux , Patrice Dehais , Alain Vignal , Olivier Bouchez , Thomas Faraut et al.

10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). Nouzilly, FRA. Institut National de la Recherche Agronomique (INRA). Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), FRA., Mar 2013, La Rochelle, France

Communication dans un congrès hal-01190264v1

Mapping by RH sequencing: organizing NGS scaffolds into chromosomes

Man Rao , Mireille Morisson , Valerie Fillon , Sophie S. Leroux , Emeline Lhuillier et al.

21. P!ant and animal genome meeting (PAG XXI), Jan 2013, San Diego, Californie, United States

Communication dans un congrès hal-02749835v1

Local score based method on pool-sequenced behaviour-divergent quail lines precisely detected selection signatures related to autism

Simon S. Boitard , Maria Inès M. I. Fariello Rico , Sabine Mercier , David Robelin , Thomas Faraut et al.

35. Colloque du Petit Pois Déridé, Aug 2013, Marseille, France

Communication dans un congrès hal-02810860v1

Goat genome assembly, availability of an international 50K SNP chip and RH panel: an update of the international goat genome consortium projects

Gwenola Tosser-Klopp , Cédric Cabau , Andre Eggen , Thomas Faraut , Henri Heuven et al.

20. Conference of the Plant & Animal Genome, Plant & Animal Genome (PAG). USA., Jan 2012, San Diego, United States. 28 diapositives

Communication dans un congrès hal-01019243v1

Towards a high density SNP International Goat Chip

Gwenola Tosser-Klopp , Abdullah Johari Jiken , Philippe Bardou , Cédric Cabau , Patrice Dehais et al.

Plant and Animal Genome, Jan 2011, San Diégo, United States

Communication dans un congrès hal-01194170v1

Détection de régions génomiques homologues par un algorithme de flots avec coûts

Eric Audemard , Thomas Faraut , Thomas Schiex

Congrès ROADEF'2010, Société Française de Recherche Opérationnelle et d'Aide à la Décision (SFROAD). FRA., Feb 2010, Toulouse, France. 2 p

Communication dans un congrès hal-02752130v1

Modelling RH maps uncertainty and application to the validation of whole genome assemblies.

Bertrand Servin , Sebastien Givry , Thomas Faraut

9th World Congress on Genetics Applied to Livestock Production, 2010, Leipzig, pp.Inconnu

Communication dans un congrès hal-02813656v1

Utilisation dune puce 60 000 SNP pour cartographier finement des QTL affectant des caractères de production, de résistance aux maladies et de comportement chez les ovins

Carole Moreno-Romieux , Bertrand Servin , Thomas Faraut , Christophe Klopp , Rachel Rupp et al.

16. Rencontres autour des Recherches sur les Ruminants, Dec 2009, Paris, France

Communication dans un congrès hal-02755058v1

Modéliser l'incertitude des cartes d'hybrides irradiés : application à la validation d'assemblage de génomes complets.

Bertrand Servin , Thomas Faraut , Sebastien Givry

Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau

Communication dans un congrès hal-02754669v1

ArcAnGe, annotating, representing and comparing animal genomes.

Thomas Faraut , E. Courcelle , Jerome Gouzy

Séminaire AGENAE, La Rochelle, Oct 2008, France, pp.Inconnu

Communication dans un congrès hal-02815778v1

Présentation du projet ANR 2008 SheepSNPQTL : utilisation de la puce 60 000 SNP pour la cartographie fine de QTL chez les ovins.

Carole Moreno-Romieux , Andres Legarra , David Robelin , Christèle Robert-Granié , Rachel Rupp et al.

Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France

Communication dans un congrès hal-02813290v1

D'Iccare à Narcisse, une promenade parmi les mythes de la bioinformatique animale.

Thomas Faraut , E. Courcelle , Jerome Gouzy

Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau

Communication dans un congrès hal-02756487v1

Deux exemples d'épissage alternatif (ASB6 et CRAT) pour montrer l'intérêt de l'étude de ce phénomène chez les espèces d'élevage

Annie Robic , Thomas Faraut , Laurence Liaubet

Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau

Communication dans un congrès hal-02752629v1

High resolution chicken radiation hybrid maps using the IlluminaTM technology.

Alain Vignal , Caroline Hourcade , Thomas Faraut , Sophie S. Leroux , Marine M. Douaud et al.

31st Conference of the International Society of Animal Genetics (ISAG), 2008, Amsterdam, pp.Inconnu

Communication dans un congrès hal-02815790v1

Chromosomal rearrangements and comparative mapping.

Thomas Faraut

Séminaire Cytogénétique des plantes Clermont-Ferrand, Apr 2007, France, pp.Inconnu

Communication dans un congrès hal-02811665v1

A SNP detection project using one million reads from WGS libraries produced from one pig from seven different breeds.

Patrice Dehais , Denis Milan , Thomas Faraut , C. Dossat , Patrick Wincker et al.

International Plant & Animal Genomes XV Conference, San Diego, 2007, California, France

Communication dans un congrès hal-02751166v1

High resolution mapping of evolutionary breakpoints in pigs

Yvette Lahbib Mansais , Florence Mompart , Denis Milan , Thomas Faraut , Martine M. Yerle

17. European Colloquium on Animal Cytogenetics and Gene mapping, June 18-21, 2006, Lisbonne, Portugal

Communication dans un congrès hal-02813597v1

The rat Toxo1 locus directs toxoplasmosis outcome and controls parasite proliferation and spreading by macrophage-dependent mechanisms

P. Cavaillès , V. Sergent , C. Bisanz , O. Papapietro , C. Colacios et al.

Inconnu, 2006, Inconnu

Communication dans un congrès hal-02752628v1

Reciprocal translocations in pigs: frequency in the French populations and analysis of their consequences on reproduction abilities of carrier animals

Alain Pinton , Martine M. Yerle , Thomas Faraut , F. Pellestor , H.M. Berland et al.

11th Internnational Congress on Biotechnology in Animal Reproduction, Sep 2004, Rapotin, pp.Inconnu

Communication dans un congrès hal-02827383v1

Male and female segregation profiles in two reciprocal translocations t(12;14)(q13;q21) and t(3;15)(q27;q13) in the pig species

Alain Pinton , A. Ducos , Martine M. Yerle , Thomas Faraut , F. Pellestor

60th Annual Meeting of the American Society for Reproductive Medicine, Oct 2004, Philadelphia, pp.Inconnu

Communication dans un congrès hal-02831758v1

A comparative porcine-human RH map for SSC2 focusing on synteny breakpoints with human

Yvette Lahbib Mansais , Florence Mompart , Thomas Faraut , Denis Milan , Martine M. Yerle

16. European Colloquium on Animal Cytogenetics and Gene Mapping, 2004, Jouy-en-Josas, France

Communication dans un congrès hal-02826042v1

RH mapping in pig to study evolutionary breakpoints between HSA7 and SSC3, 9 and 18

Florence Mompart , Yvette Lahbib Mansais , Thomas Faraut , Denis Milan , Martine M. Yerle

16. European Colloquium on Animal Cytogenetics and Gene Mapping, 2004, Jouy-en-Josas, France

Communication dans un congrès hal-02827995v1

Male and female segregation profiles in two reciprocal translocations t(12;14)(q13;q21) and t(3;15)(q27;q13) in pig

Alain Pinton , A. Ducos , Martine M. Yerle , Thomas Faraut , F. Pellestor

16th European Colloquium on Animal Cytogenetics and Gene Mapping, 2004, Jouy-en-Josas, France

Communication dans un congrès hal-02829792v1

A comparative radiation hybrid map of SSC17 and human homologous chromosomes HSA 20, 8 and 4

Yvette Lahbib Mansais , M.P. Karlskov , Florence Mompart , Jan Gorodkin , Thomas Faraut et al.

29. International Conference on International Society of Animla Genetics, Sep 2004, Tokyo, Japan

Communication dans un congrès hal-02761544v1

A radiation hybrid panel and its use in developing a gene map of the chicken

Mireille Morisson , C. Jiguet-Jiglaire , Alexis Lemiere , Sophie S. Leroux , Thomas Faraut et al.

2003 Spring Meeting of the WPSA French Branch., 2003, Inconnu

Communication dans un congrès hal-02826038v1

Integration des cartes humaines et porcines : 623 nouveaux points d'homologie

Annie Robic , Thomas Faraut , Nathalie N. Iannuccelli , Patrick Chardon , Denis Milan

Colloque Génomique des animaux d'élevage, Seignosse-le-Penon, May 2003, Seignosse-le-Peignon

Communication dans un congrès hal-02762328v1

Un panel d'hybrides irradiés et son utilisation pour développer une carte des gènes de la poule

Mireille Morisson , C. Jiguet-Jiglaire , Alexis Lemiere , Sophie S. Leroux , Thomas Faraut et al.

5èmes Journées de la Recherche Avicole, 2003, Tours, France

Communication dans un congrès hal-02761067v1

Promises and lessons from complete genome sequences for comparative mapping.

Thomas Faraut

International Workshop on Major Genes and QTL in Sheep and Goat, 2003, Toulouse

Communication dans un congrès hal-02760525v1

A chicken radiation hybrid panel and its use for mapping

Mireille Morisson , Thomas Faraut , Martine M. Yerle , Alain Vignal

11th European Poultry Conference, Sep 2002, Bremen, Germany

Communication dans un congrès hal-02825614v1

Retro-CNVs, selection and functionality in sheep

Emma Mezailles , Laure Gress , Thomas Faraut , Stéphane Fabre , Pierre Faux et al.

National congress on transposable elements and repeated sequences, Jul 2026, Montpellier, France

Poster de conférence hal-05728993v1

Exploring endogenous retroviruses in ruminant genomes: They might not be all dead after all

Marie Verneret , Caroline Leroux , Thomas Faraut , Vincent Navratil , Emmanuelle Lerat et al.

Bioinformatics and Evolutionary Genomics (ALPHY = ALignments and PHYlogeny), Feb 2025, Villeurbanne, France

Poster de conférence hal-04965269v1

Exploring endogenous retroviruses in ruminant genomes: They might not be all dead after all

Marie Verneret , Caroline Leroux , Thomas Faraut , V. Navratil , Emmanuelle Lerat et al.

XXVIIes Journées francophones de virologie, Apr 2025, Lyon, France

Poster de conférence hal-05737823v1

Hi-C for the detection and characterization of chromosomal rearrangements in cattle

Nicolas Mary , Anne-Laure Valton , Harmonie Barasc , Anne Calgaro , Christelle Marrauld et al.

25th International Colloquium on Animal Cytogenetics and Genomics, Jun 2024, Naples, Italy.

Poster de conférence hal-04651644v1

Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breeds

Amandine Suin , Camille Marcuzzo , Camille Eché , Andreea Dréau , Clément Birbes et al.

Plant and Genome San Diego 2024, Jan 2024, San Diego, United States

Poster de conférence hal-04432840v1

Small ruminants versus endogenous retroviruses: an evolutive showdown still in progress in the domestic goat genome

Marie Verneret , Caroline Leroux , Vincent Navratil , Thomas Faraut , Jocelyn Turpin et al.

International congress on transposable elements, Apr 2024, Saint Malo, France

Poster de conférence hal-04727644v1

Retrocopies and CNVs in Ruminants

Carine Genet , Julie Birgel , Thomas Faraut

EMBL Livestock genomics, Mar 2024, Virtual, France

Poster de conférence hal-05728972v1

Sex differences in recombination rates are associated with hotspot usage in sheep

Bertrand Servin , Thomas Faraut , Dominique Hazard , Susan E. Johnston , Flavie Tortereau

7th International Conference on Quantitative Genetics, Jul 2024, Vienne, Austria

Poster de conférence hal-05514288v1

Structural variants detection and de novo genome assembly of a maize line

Carole Iampietro , Camille Eché , Clément Birbes , Arnaud Di Franco , Andreea Dréau et al.

Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States

Poster de conférence hal-03541379v1

Quelques résultats du programme VarGoats : « 1000 génomes caprins »

L Denoyelle , M Amills , Philippe Bardou , Maxime Ben Braiek , Thomas Faraut et al.

Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France

Poster de conférence hal-03812438v1

Rétrogènes et variation du nombre de copies chez les ruminants

Carine Genet , Stéphane Fabre , Thomas Faraut

Journées scientifiques du département de Génétique Animale, Sep 2022, Bordeaux, France

Poster de conférence hal-05728956v1

Combiner analyse d’association et génomique fonctionnelle pour la recherche de gènes candidats

Sarah Djebali , Sophie Leroux , Katia Feve , Yann Labrune , Catherine Larzul et al.

Journées scientifiques Département Génétique animale, Sep 2022, Bordeaux, France

Poster de conférence hal-03936070v1

De novo assembly of 90 bovines genomes using PacBio CLR application comparison and optimization

Camille Marcuzzo , Amandine Suin , Camille Eché , Andreea Dreau , Clément Birbes et al.

Assemblée générale France Génomique, Jun 2022, Paris, France

Poster de conférence hal-04590746v1

Rétrogènes et variation du nombre de copies chez les ruminants

Carine Genet , Stéphane Fabre , Thomas Faraut

Journées scientifiques Département Génétique Animale, Sep 2022, Bordeaux, France

Poster de conférence hal-04225788v1

De novo assembling 19 maize inbred lines of the European germplasm

Carole Iampietro , Camille Eché , Clement Birbes , Andreea Dreau , Erwan Denis et al.

63rd Annual Maize Genetics Meeting, Mar 2021, virtuel, United States

Poster de conférence hal-03539396v1

Structural variants detection and de novo genome assembly of a Maize line

Camille Eché , Clement Birbes , Carole Iampietro , Arnaud Di Franco , Andreea Dreau et al.

SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands

Poster de conférence hal-03541316v1

The importance of annotations (reference genome and parent gene) for the study of circRNAs

Annie Robic , Thomas Faraut , Chloé Cerutti , Julie Demars , Christa Kühn

ISAG 2021- virtual conference of the International Society for Animal Genetics, Jul 2021, virtual, South Africa.

Poster de conférence hal-03445792v1

De novo assembly of bovine genome using PacBio applications

Camille Eché , Clément Birbes , Carole Iampietro , Andreea Dréau , Claire Kuchly et al.

SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands

Poster de conférence hal-03541224v1

A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis

Carole Iampietro , Camille Eché , Adrien Castinel , Rémy-Félix Serre , Christophe Klopp et al.

PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020

Poster de conférence hal-02947690v1

the ability to produce exonic circularRNA appears to be mainly linked to the genomic structure of genes

Annie Robic , Sarah Djebali , Rosemarie Weikard , Christa Kuehn , Thomas Faraut

RNAtoul 2019, Jun 2019, Toulouse, France. 2019

Poster de conférence hal-02788016v1

Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomes

Camille Mestre , Sarah Djebali Quelen , Thomas Faraut , Nathalie Vialaneix , Andrea Rau et al.

European Conference on Computational Biology (ECCB 2018), Sep 2018, Athènes, Greece. , 2018

Poster de conférence hal-02784857v1

Présentation et premiers résultats du programme 1000 génomes caprins : VarGoats

Philippe Bardou , Céline Bourdon , Laure Denoyelle , Thomas Faraut , Estelle Talouarn et al.

Journées Scientifiques du Département de Génétique Animale, Oct 2018, Dienné, France

Poster de conférence hal-03817570v1

Local Score Based Method On Pool-Sequenced Behavior-Divergent Quail Lines Precisely Detected Selection Signatures Related To Autism

Maria Inès Fariello Rico , Simon Boitard , S. Mercier , David Robelin , Thomas Faraut et al.

10. World Congress on Genetics Applied to Livestock Production (WCGALP), Aug 2014, Vancouver, Canada. American Society of Animal Science, 2014, 10th Word Congress on Genetics Applied to Livestock Production

Poster de conférence hal-01194042v1

Local Score Based Method On Pool-Sequenced Behavior-Divergent Quail Lines Precisely Detected Selection Signatures Related To Autism

Maria Inès Fariello Rico , Cécile Arnould , Simon Boitard , Patrice Dehais , Thomas Faraut et al.

Journée Régionale de Bioinformatique et Biostatistique, Génopole Toulouse, Jun 2014, Toulouse, France. 2014

Poster de conférence hal-01194044v1

Evaluation of the porcine Sscrofa10.2 assembly and associated annotations.

Annie Robic , Laurence Liaubet , Agnès Bonnet , Thomas Faraut

25. International Conference Genetic Days, Sep 2012, Wroclaw, Poland. 2012

Poster de conférence hal-02804016v1

A genome-wide study of ruminants reveals two endogenous retrovirus families still active in goats

Marie Verneret , Caroline Leroux , Thomas Faraut , Vincent Navratil , Emmanuelle Lerat et al.

2024

Pré-publication, Document de travail hal-04706314v1

RH mapping by sequencing: chromosome-scale assembly of the duck genome

Man Rao , Alain Vignal , Mireille Morisson , Valérie Fillon , Sophie Leroux et al.

2019

Pré-publication, Document de travail (preprint/prepublication) hal-02955250v1

A new local score based method applied to behavior-divergent quail lines sequenced in pools precisely detects selection signatures on genes related to autism

Maria Inès Fariello Rico , Simon Boitard , Sabine Mercier , David Robelin , Thomas Faraut et al.

2015

Pré-publication, Document de travail (preprint/prepublication) hal-01194146v1

Comparaison et visualisation de graphes de pangénomes

Siegfried Dubois , Claire Lemaitre , Thomas Faraut , Matthias Zytnicki

Université de rennes. 2023, pp.1-38

Rapport (rapport de recherche) hal-04213245v1

Organisation linéaire du génome et ses variations

Thomas Faraut

Sciences du Vivant [q-bio]. Université Toulouse 3, 2019

HDR tel-04975276v1

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