
Timothy M. Vogel
217
Documents
Publications
Publications
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EggVio: a user friendly and versatile pipeline for assembly and functional annotation of shallow depth sequenced samples2022
Pré-publication, Document de travail
hal-03827598
v1
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Snow microorganisms colonise Arctic soils following snow melt2022
Pré-publication, Document de travail
hal-03865863
v1
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Microbiology of the Cryosphere: Diversity, Habitat Constraints and EcologyChemistry in the Cryosphere, WORLD SCIENTIFIC, pp.755-794, 2022, ⟨10.1142/9789811230134_0015⟩
Chapitre d'ouvrage
hal-03827601
v1
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Bioaugmentation for Groundwater Remediation: an OverviewHans F. Stroo. Bioaugmentation for Groundwater Remediation, Springer New York, pp.1-37, 2013, SERDP ESTCP Environmental Remediation Technology, 978-1-4614-4114-4. ⟨10.1007/978-1-4614-4115-1_1⟩
Chapitre d'ouvrage
hal-00846124
v1
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Soil Metagenomic Exploration of the Rare BiosphereFrans J. de Bruijn. Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches, Wiley-Blackwell, pp.287-298, 2011, 978-0-470-92418-1
Chapitre d'ouvrage
hal-00925266
v1
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Gene flow in the rhizosphereThe Rhizosphere, Biochemistry and Organic Substances at the Soil-Plant Interface, Marcel Dekker, pp.non connu, 2007
Chapitre d'ouvrage
hal-00338069
v1
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Determining possible origin, structure and function of microbial communitiesPolar & Alpine Microbiology 2019, Feb 2019, Hamilton, New Zealand
Communication dans un congrès
hal-02122119
v1
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Environmental resistome transcriptional response to gentamicin pollution at sub-inhibitory concentrations8th Symposium on Antimicrobial Resistance in Animals and the Environment, Jul 2019, Tours, France
Communication dans un congrès
hal-02458392
v1
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The colonisation and selection processes involved in shaping frost flower communitiesPolar, Jun 2018, Davos, Switzerland
Communication dans un congrès
hal-01977524
v1
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Effect of environmental ARG expression under selective pressure on ARG transfer to bacteriaISME17, Aug 2018, Leipzig, Germany. pp.23
Communication dans un congrès
hal-01973591
v1
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Geographical distribution of bacterial communities in the atmosphere and controlling factors11th International Congress on Aerobiology, Sep 2018, Parma, Italy
Communication dans un congrès
hal-01977530
v1
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Bacterial and fungal diversity along a vertical air column at Mount Sonnblick, Austria11th International Congress on Aerobiology, Sep 2018, Parma, Italy
Communication dans un congrès
hal-01977542
v1
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Bacterial competition for the colonization of anodic surface in microbial fuel cellsISME16, Aug 2016, Montréal, Canada
Communication dans un congrès
hal-01946355
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Bacterial competition for the colonization of anodic surface in microbial fuel cellsEU-ISMET 2016, Sep 2016, Rome, Italy
Communication dans un congrès
hal-01946344
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Optimization of anode current collector in microbial fuel cell for improved power output and bacterial developmentEU-ISMET 2016, Sep 2016, Rome, Italy
Communication dans un congrès
hal-01626861
v1
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Electrochemical analysis of permselective properties of anodic biofilms in microbial fuel cellsEU-ISMET 2016, Sep 2016, Rome, Italy
Communication dans un congrès
hal-01946350
v1
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Microbial diversity and function in Arctic ice and snowBAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy
Communication dans un congrès
hal-01974649
v1
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Electrochemistry and microbial ecology evaluation of anodic biofilms for improved microbial fuel cells scale-upISMET 2015, Oct 2015, Tempe, Arizona, United States
Communication dans un congrès
hal-01976769
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Microbial life in the arctic snowpack photochemical reactorPolar and Alpine Microbiology (PAM) congress, Sep 2015, České Budějovice, Czech Republic
Communication dans un congrès
hal-01976684
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Arctic snowpack-soil interface - strict boundary or ecosystem trading zone?Polar and Alpine Microbiology (PAM) congress, Sep 2015, České Budějovice, Czech Republic
Communication dans un congrès
hal-01976691
v1
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Environmental start-upsIndustrial Fair, Sep 2015, Lyon, France
Communication dans un congrès
hal-01976738
v1
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The effect of the potential on bacterial adhesion to the anode in microbial fuel cellBAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy
Communication dans un congrès
hal-01946360
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Microbial community structure and function vertical distribution in snowpack over sea ice from Greenlandic fjordBAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy
Communication dans un congrès
hal-01974636
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Metagenomic and metagenic approaches applied to enhanced anaerobic reductive dechlorination of polychlorinated biphenyls: linking structure and functionBAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy
Communication dans un congrès
hal-01974644
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Electrochemistry and microbial ecology approach of anodic biofilms for the study of scaled-up microbial fuel cellsGoldschmidt Conference, Aug 2015, Prague, Czech Republic. pp.2380
Communication dans un congrès
hal-01626853
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Microbial community structure and function vertical distribution in snowpack over sea ice from Greenlandic fjordGordon Research Conference, Mar 2015, Barga, Italy
Communication dans un congrès
hal-01974570
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Soil and comparative environmental metagenomicsIndo-French Workshop on Environmental Biotechnology (Molecular Ecology & Environmental Engineering), Feb 2015, Bhubaneswar, India
Communication dans un congrès
hal-01974548
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The effect of adhesion force between bacteria and anode on electron transfer from acetate to anode in microbial fuel cellsBAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy
Communication dans un congrès
hal-01974648
v1
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Cold environments as “hot spots” for microbial adaptation and evolution: Arctic snow and ice in the context of changeGoldschmidt Conference, Aug 2015, Prague, Czech Republic
Communication dans un congrès
hal-01976628
v1
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Large Scale Spatial Analysis of Bacterial Communities in Sediments (Chilika Lake), the Role of Physico-Chemical Parameters, Spatial Distance, Land Cover and extreme eventsIndo-French Workshop on Environmental Biotechnology (Molecular Ecology & Environmental Engineering), Feb 2015, Bhubaneswar, India
Communication dans un congrès
hal-01974559
v1
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Microbial ecology approach of anodic biofilms for the study of scaled-up microbial fuel cellsBAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy
Communication dans un congrès
hal-01626839
v1
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Viral-host interactions in glacial ice and their adaptive significancePolar and Alpine Microbiology (PAM) congress, Sep 2015, České Budějovice, Czech Republic
Communication dans un congrès
hal-01976700
v1
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Microbial Social Networks in Contaminated SoilsEcology of soil Microorganisms, Nov 2015, Prague, Czech Republic
Communication dans un congrès
hal-01976791
v1
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Why Metagenomics?BAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy
Communication dans un congrès
hal-01974642
v1
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Large scale spatial analysis of bacterial communities in lake sediments, the role of physico-chemical parameters, spatial distance, land cover and tropical stormsBAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy
Communication dans un congrès
hal-01974628
v1
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Characterization of a Microbial Fuel Cell with a New Configuration for Scale-up in Wastewater Treatment PlantISMET 2015, Oct 2015, Tempe, Arizona, United States
Communication dans un congrès
hal-01626859
v1
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Large Scale Spatial Analysis of Bacterial Communities in Lake Sediments, the Role of Physico-Chemical Parameters, Spatial Distance, Land Cover and Tropical StormsEcology of soil Microorganisms, Nov 2015, Prague, Czech Republic
Communication dans un congrès
hal-01976816
v1
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The effect of the potential on bacterial competition to colonize the anodic surface in Microbial Fuel CellsISMET 2015, Oct 2015, Tempe, Arizona, United States
Communication dans un congrès
hal-01976764
v1
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Comparative MetagenomicsScience without Borders, Apr 2015, Florianópolis, Brazil
Communication dans un congrès
hal-01974581
v1
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Electrochemical analysis of permselective properties of anodic biofilms in microbial fuel cellsISMET 2015, Oct 2015, Tempe, Arizona, United States
Communication dans un congrès
hal-01946357
v1
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Microbial diversity and function during different bioremediation strategies of diesel-polluted soilBAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy
Communication dans un congrès
hal-01974638
v1
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Viral-host interactions in the environment and their adaptive significanceBAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy
Communication dans un congrès
hal-01974633
v1
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Application of Molecular Biology for the Understanding, Engineering and Modeling of Chlorinated Solvent BioremediationBATTELLE BIOREMEDIATION CONFERENCE Third International Symposium on Bioremediation and Sustainable Environmental Technologies, May 2015, Miami, FL, United States
Communication dans un congrès
hal-01974596
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CRISPRs based phage-host interactions in glacial ice10th International Congress on Extremophiles, Sep 2014, Saint-Pétersbourg, Russia
Communication dans un congrès
hal-01973799
v1
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Système microfluidique en configuration piles à combustible microbienne pour étudier les performances électrocatalytiques de biofilms bactériensCongrès dans le cadre des 9èmes journées Maghreb Europe : Matériaux et Application aux DIspositifs et CApteurs (MADICA), Nov 2014, Madhia, Tunisie
Communication dans un congrès
hal-01974055
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La biologie moléculaire : le management des ressources microbiennes et la gestion des sites pollués3e Rencontres nationales de la Recherche sur les sites & sols pollués (ADEME), Nov 2014, Paris, France
Communication dans un congrès
hal-01974067
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Biodechlord search for evidence for microbial degradation of chlordecone in French West Indies contaminated soilsIntersol'2014, Mar 2014, Lille, France. 1p
Communication dans un congrès
hal-01192455
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Enhancing microbial degradation of recalcitrant chlorinated compounds by microbial stimulation and metal additionCSME-SARCLE, Oct 2014, Bruxelles, Belgium
Communication dans un congrès
hal-01973979
v1
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Development of q-PCR analysis of water and soil to estimate the biodegradation kinetics of chloroethenesCSME-SARCLE, Oct 2014, Bruxelles, Belgium
Communication dans un congrès
hal-01973995
v1
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GIS Improves Microbial Ecology Spatial Analysis of Bacterial Communities6th Argonne Soil Metagenomic Meeting, Oct 2014, St Charles, United States
Communication dans un congrès
hal-01973916
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Un nouveau système microfluidique en configuration pile à combustible microbienne pour étudier les performances électrocatalytiques des biofilms bactériensMADICA, Nov 2014, Mahdia, Tunisie
Communication dans un congrès
hal-01946359
v1
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Dynamic of the snow Ecosystem in polar RegionsRéunion de Préparation à la campagne de terrain Svalbard, Mar 2014, Bremerhaven, Germany
Communication dans un congrès
hal-01973634
v1
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Metagenomic and metagenic approaches to link structure and function6th Argonne Soil Metagenomic Meeting, Oct 2014, St Charles, United States
Communication dans un congrès
hal-01973894
v1
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The Dynamic Arctic Snowpack Microbial HabitatPAM5, Sep 2013, Big Sky, Montana, United States. pp.30
Communication dans un congrès
hal-00932225
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Viruses keep Arctic microbial adaptation from its breaking pointPAM5, Sep 2013, Big Sky, Montana, United States. pp.23
Communication dans un congrès
hal-00932236
v1
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Bactéries, foudre et transfert latéral dans les nuagesMicrobAERO : Microbiologie des Aérosols, Université Blaise Pascal (Clermont Ferrand 2) (UBP). FRA., Oct 2013, La Bourboule, France
Communication dans un congrès
hal-00932186
v1
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The Arctic snowpack microbial community highlighted by metagenomics and metatranscriptomics2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany
Communication dans un congrès
hal-00925332
v1
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Managing microbial communities for sequentially reconstruct genomes from complex metagenomesEGU, Apr 2013, Vienne, Austria. pp.1147
Communication dans un congrès
hal-00821702
v1
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Emerging issues - An opinion2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany
Communication dans un congrès
hal-00925329
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Etat des lieux des outils et des technologies de biologie moléculaireBiomInnov : La biologie moléculaire appliquée à l'Environnement et au service de l'innovation industrielle, Dec 2013, Romainville, France
Communication dans un congrès
hal-00925337
v1
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Soil microbial community structure vs. function - Who's driving?2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany
Communication dans un congrès
hal-00925336
v1
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Spatial diversity of sediment bacteria, an approach using GIS and 16S rRNA gene sequence profiling: The case of Chilika Lake5th Annual Argonne Soil Metagenomics Meeting, Oct 2013, Bloomingdale, Illinois, United States
Communication dans un congrès
hal-00932200
v1
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La neige : Un milieu vivant avec un rôle fondamental dans la régulation de la planète9èmes Journées Scientifiques du CNFRA, May 2013, Paris, France
Communication dans un congrès
hal-00988705
v1
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Use of CRISPRs in the search for a viral global metacommunityCRISPR: Evolution, Mechanisms and Infection, Jun 2013, St Andrews, United Kingdom
Communication dans un congrès
hal-00988702
v1
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Criblage génétique d'une banque fosmidique d'ADN métagénomique d'un sol de référence pour la recherche de gènes fonctionnels d'intérêt industrielVIème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Oct 2013, Parent, France
Communication dans un congrès
hal-00925344
v1
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The Arctic snowpack microbial community highlighted by metagenomics and metatranscriptomicsPAM5, Sep 2013, Big Sky, Montana, United States. pp.36
Communication dans un congrès
hal-00932231
v1
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TerraGenomeGordon Research Conference : Applied & Environmental Microbiology - Exploring and Exploiting the Depths of the Microbial Biosphere, Jul 2013, South Hadley, United States
Communication dans un congrès
hal-00988699
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Managing microbial communities for finding new enzymes and sequentially reconstruct genomes from complex metagenomes5th Congress of European Microbiologists (FEMS 2013), Jul 2013, Leipzig, Germany. pp.S32, SOIL METAGENOMICS, Hall 5
Communication dans un congrès
hal-00932256
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Quantification of plasmids in soils stressed by different conditions2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany
Communication dans un congrès
hal-00925335
v1
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Assessing the impact of genetically modified plants on the environment using NGS; a case study on transgenic grapevine rootstocks expressing viral coat protein and bacterial nptII transgenesBiomInnov : La biologie moléculaire appliquée à l'Environnement et au service de l'innovation industrielle, Dec 2013, Romainville, France
Communication dans un congrès
hal-00925339
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Seasonal changes in snow chemistry lead to new insights into mercury methylation in the ArcticInternational Polar Year Oslo Conference 2010, Norway: 'Polar Science - Global Impact', Jun 2010, Oslo, Norway
Communication dans un congrès
hal-00925324
v1
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Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach10. Symposium on Bacterial Genetics and Ecology - Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-02753844
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LIGHTNING-ASSISTED ENVIRONMENTAL GENETIC THERAPYBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399257
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ASSESSING INTERACTIONS BETWEEN MERCURY AND MICROBIAL POPULATIONS IN THE SNOWPACK: A METAGENOMIC APPROACHBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399256
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Apport du séquençage massif à l'étude de la diversité et du fonctionnement des communautés bactériennesÉVOLUTION ET BIODIVERSITÉ MICROBIENNE IMPACT DU SÉQUENÇAGE DE NOUVELLE GÉNÉRATION, Dec 2009, Paris, France
Communication dans un congrès
hal-00440051
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FROM “OMICS” TO “OHMICS”: ELECTRICITYPRODUCING BACTERIAL COMMUNITY STRUCTURES IN MICROBIAL FUEL CELLSBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399261
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COMPARATIVE ANALYSIS OF MICROARRAY, RISA AND SEQUENCING APPROACHES FOR MICROBIAL COMMUNITY ANALYSESBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399230
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STRUCTURE AND PERFORMANCE OF ELECTRO-ACTIVE BACTERIAL COMMUNITIES IN MICROBIAL FUEL CELLS UNDER VARYING OPERATING CONDITIONSBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399263
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COMPARISON BETWEEN TOTAL AND ACTIVE BACTERIAL COMMUNITIES IN SOIL CONTAMINATED BY CHLORINATED COMPOUNDS, USING PYROSEQUENCING AND MICROARRAYSBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399231
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ASSESSING DEHALOGENASE ACTIVITIES UTILIZING INTEGRATING QUANTITATIVE PCR AND MICROARRAYS DURING PCE BIOREMEDIATION : THE CONTRUCTION OF A NEW DEGRADATION MODELBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399232
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Characterization of denitrification gene clusters of soil bacteria via a metagenomic approachFEMS 2009 – Third Congress of European Microbiologists : Microbes and Man – Interdependence and Future Challenges, Jun 2009, Goteborg, Sweden
Communication dans un congrès
hal-00411820
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GENOME FLEXIBILITY ACROSS DIFFERENT STRAINS OF THE HEXACHLOROCYCLANE-DEGRADING BACTERIUM SPHINGOBIUM FRANCENSE SP+ IDENTIFIED BY A GLOBAL APPROACH OF GENOME SEQUENCING AND MICROARRAY COMPARATIVE GENOMIC HYBRIDIZATIONBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399182
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IS EVERYTHING EVERYWHERE?BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399250
v1
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MICROBIAL CANNIBALISM IN EXTREME STARVED ENVIRONMENTBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399177
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SOIL METAGENOMIC: WHERE IS THE DIVERSITY?BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399234
v1
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DISTRIBUTION AND REGULATION OF CYTOCHROMES P450 INVOLVED IN FUEL OXYGENATES DEGRADATIONBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399251
v1
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WHERE DO DEHALOGENASES COME FROM ? A MULTIDISCIPLINARY STUDY HIGHLIGHTS THE PRIMARY ROLE OF HORIZONTAL GENE TRANSFER DURING RECENT FUNCTIONAL ADAPTATIONBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399233
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Characterization of soil bacteria denitrification gene cluster via a metagenomic approach3. FEMS Congress of European Microbiologists :microbes and man-interdependence and future challenges, Jun 2009, Gothenburg, Sweden. 1 p
Communication dans un congrès
hal-02818354
v1
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Maîtrise de la dispersion des gènes de résistance aux antibiotiques en milieux naturels (AntiReSol)Congrès AFEM, Aug 2009, Ecully, France
Communication dans un congrès
hal-00411821
v1
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COMPLETE SEQUENCING OF THE SOIL METAGENOME: AN ATTAINABLE UTOPIA?BAGECO 10 : Bacterial Genetics and Ecology - Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399175
v1
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GEOMICROBIOLOGY OF EXTREME SOILSBAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès
hal-00399260
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Geomicrobiology of extreme soils along a transect-slopeThe 12th International Symposium on Microbial Ecology (ISME 12), Aug 2008, Caims, Australia
Communication dans un congrès
hal-00399434
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Analyse et exploitation de la diversité génétique des polykétides synthases de type I dans l'ADN metagénomique d'un sol7ème colloque national "Ressources génétiques", Oct 2008, Strasbourg, France. pp.201-213
Communication dans un congrès
hal-00338083
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Diversité et évolution des déshalogénases bactériennes : détection bioinformatique et perspectives de recherche7ème colloque national "Ressources génétiques", Oct 2008, Strasbourg, France. pp.83-94
Communication dans un congrès
hal-00338089
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Metagenomic library selection and validation by pyrosequencingISME 12. International Symposium on Microbial Ecology, Aug 2008, Cairns, Australia. 1 p
Communication dans un congrès
hal-01190317
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HOW MICROBIAL COMMUNITY STRUCTURE AND FUNCTION RELATE TO EACH OTHER WHEN CHLORINATED COMPOUNDS ARE INVOLVEDThe 12th International Symposium on Microbial Ecology (ISME 12), Aug 2008, Caims, Australia
Communication dans un congrès
hal-00399439
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METAGENOMIC: INSIGHTS ON EXTREME METABOLISMThe 12th International Symposium on Microbial Ecology (ISME 12), Aug 2008, Caims, Australia
Communication dans un congrès
hal-00399436
v1
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Environmental resistome transcriptional response to gentamicin pollution5th International Symposium on the Environmental Dimension of Antibiotic Resistance, Jun 2019, Hong Kong, China
Poster de conférence
hal-04768802
v1
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Production d'un biofilm sur une électrode pour biopile, électrode et biopile obtenuesN° de brevet: 08 53441. 2008
Brevet
hal-00369250
v1
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