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tom delmont

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Tracing the invertebrate herpesviruses in the global sequence datasets

Umberto Rosani , Morgan Gaia , Tom O Delmont , Mart Krupovic
Frontiers in Marine Science, 2023, 10, pp.1159754. ⟨10.3389/fmars.2023.1159754⟩
Article dans une revue pasteur-04162270v1
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Genomic adaptation of giant viruses in polar oceans

Lingjie Meng , Tom Delmont , Morgan Gaïa , Eric Pelletier , Antonio Fernàndez-Guerra
Nature Communications, 2023, 14 (1), pp.6233. ⟨10.1038/s41467-023-41910-6⟩
Article dans une revue hal-04385851v1
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Mirusviruses link herpesviruses to giant viruses

Morgan Gaïa , Lingjie Meng , Eric Pelletier , Patrick Forterre , Chiara Vanni
Nature, 2023, 616 (7958), pp.783-789. ⟨10.1038/s41586-023-05962-4⟩
Article dans une revue pasteur-04085734v1
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Daniel Richter , Romain Watteaux , Thomas Vannier , Jade Leconte , Paul Frémont
eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩
Article dans une revue hal-02399723v2
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The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes

Caroline Vernette , Julien Lecubin , Pablo Sánchez , (team) Tara Oceans Coordinators , Shinichi Sunagawa
Nucleic Acids Research, 2022, 11, ⟨10.1093/nar/gkac420⟩
Article dans une revue hal-03696136v1

Unifying the known and unknown microbial coding sequence space

Chiara Vanni , Matthew Schechter , Silvia Acinas , Albert Barberán , Pier Luigi Buttigieg
eLife, 2022, 11, ⟨10.7554/eLife.67667⟩
Article dans une revue cea-04425144v1
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Priorities for ocean microbiome research

Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas
Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩
Article dans une revue hal-03781942v1

Biosynthetic potential of the global ocean microbiome

Lucas Paoli , Hans-Joachim Ruscheweyh , Clarissa Forneris , Florian Hubrich , Satria Kautsar
Nature, 2022, 607 (7917), pp.111-118. ⟨10.1038/s41586-022-04862-3⟩
Article dans une revue hal-04376240v1
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Giant viruses encode actin-related proteins

Violette da Cunha , Morgan Gaia , Hiroyuki Ogata , Olivier Jaillon , Tom O Delmont
Molecular Biology and Evolution, 2022, 39 (2), pp.msac022. ⟨10.1093/molbev/msac022⟩
Article dans une revue cea-04281384v1

In-depth characterization of denitrifier communities across different soil ecosystems in the tundra

Igor Pessi , Sirja Viitamäki , Anna-Maria Virkkala , Eeva Eronen-Rasimus , Tom Delmont
Environmental Microbiome, 2022, 17 (1), pp.30. ⟨10.1186/s40793-022-00424-2⟩
Article dans une revue cea-04425162v1

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Tom Delmont , Morgan Gaia , Damien Hinsinger , Paul Frémont , Chiara Vanni
Cell Genomics, 2022, 2 (5), pp.100123. ⟨10.1016/j.xgen.2022.100123⟩
Article dans une revue hal-03872935v2
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Restructuring of plankton genomic biogeography in the surface ocean under climate change

Paul Frémont , Marion Gehlen , Mathieu Vrac , Jade Leconte , Tom O. Delmont
Nature Climate Change, 2022, 12 (4), pp.393-401. ⟨10.1038/s41558-022-01314-8⟩
Article dans une revue insu-03659872v1

Gut Microbiota Linked with Reduced Fear of Humans in Red Junglefowl Has Implications for Early Domestication

Lara Puetz , Tom Delmont , Ostaizka Aizpurua , Chunxue Guo , Guojie Zhang
Advanced Genetics, 2021, 2 (4), ⟨10.1002/ggn2.202100018⟩
Article dans une revue hal-04376251v1

Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean

Tom Delmont , Juan José Pierella Karlusich , Iva Veseli , Jessika Fuessel , A. Murat Eren
The International Society of Microbiologial Ecology Journal, 2021, 16 (4), pp.927-936. ⟨10.1038/s41396-021-01135-1⟩
Article dans une revue hal-03480646v1
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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses

Jiarong R. Guo , Ben Bolduc , Ahmed A. Zayed , Arvind Varsani , Guillermo Dominguez-Huerta
Microbiome, 2021, 9 (1), pp.37. ⟨10.1186/s40168-020-00990-y⟩
Article dans une revue cea-04284766v1
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Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean

Hiroto Kaneko , Romain Blanc-Mathieu , Hisashi Endo , Samuel Chaffron , Tom Delmont
iScience, 2021, 24 (1), pp.102002. ⟨10.1016/j.isci.2020.102002⟩
Article dans une revue hal-03097258v3

Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms

Petra Bulankova , Mirna Sekulić , Denis Jallet , Charlotte Nef , Cock van Oosterhout
Current Biology - CB, 2021, 31 (15), pp.3221-+. ⟨10.1016/j.cub.2021.05.013⟩
Article dans une revue hal-03333507v1
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Discovery of viral myosin genes with complex evolutionary history within plankton

Soichiro Kijima , Tom O. Delmont , Urara Miyazaki , Morgan Gaia , Hisashi Endo
Frontiers in Microbiology, 2021, 12, pp.e683294. ⟨10.3389/fmicb.2021.683294⟩
Article dans une revue hal-04288984v1
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Genome-resolved metagenomics suggests a mutualistic relationship between $Mycoplasma$ and salmonid hosts

Jacob A. Rasmussen , Kasper R. Villumsen , David A. Duchene , Lara C. Puetz , Tom O. Delmont
Communications Biology, 2021, 4 (1), pp.e579. ⟨10.1038/s42003-021-02105-1⟩
Article dans une revue hal-04288991v1

Early-life microbial restitution reduces colitis risk promoted by antibiotic-induced gut dysbiosis in interleukin 10(-/-) mice

Jun Miyoshi , Sawako Miyoshi , Tom O. Delmont , Candace Cham , Sonny T. M. Lee
Gastroenterology, 2021, 161 (3), pp.940-952. ⟨10.1053/j.gastro.2021.05.054⟩
Article dans une revue hal-04288988v1

Community-led, integrated, reproducible multi-omics with anvi'o

A. Murat Eren , Evan Kiefl , Alon Shaiber , Iva Veseli , Samuel E. Miller
Nature Microbiology, 2021, 6 (1), pp.3-6. ⟨10.1038/s41564-020-00834-3⟩
Article dans une revue cea-04284764v1

Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean

Tom O. Delmont
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (46), pp.e2112355118. ⟨10.1073/pnas.2112355118j1of10⟩
Article dans une revue cea-04284763v1
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Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Alon Shaiber , Amy D. Willis , Tom O. Delmont , Simon Roux , Lin-Xing Chen
Genome Biology, 2020, 21, pp.292. ⟨10.1186/s13059-020-02195-w⟩
Article dans une revue cea-04300151v1
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Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics

Alexey Vorobev , Marion Dupouy , Quentin Carradec , Tom O. Delmont , Anita Annamalé
Genome Research, 2020, 30 (4), pp.647-659. ⟨10.1101/gr.253070.119⟩
Article dans une revue hal-02573621v1
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Effects of iron and light availability on phytoplankton photosynthetic properties in the Ross Sea

Anne-Carlijn Alderkamp , Gert L. Van Dijken , Kate E. Lowry , Kate M. Lewis , Hannah L. Joy-Warren
Marine Ecology Progress Series, 2019, 621, pp.33-50. ⟨10.3354/meps13000⟩
Article dans une revue cea-04307620v1

Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota

Luke J. Mckay , Mensur Dlakic , Matthew W. Fields , Tom O. Delmont , A. Murat Eren
Nature Microbiology, 2019, 4 (4), pp.614-622. ⟨10.1038/s41564-019-0362-4⟩
Article dans une revue cea-04309464v1
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Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents

Rika E. Anderson , Julie Reveillaud , Emily Reddington , Tom O. Delmont , A. Murat Eren
Nature Communications, 2017, 8, ⟨10.1038/s41467-017-01228-6⟩
Article dans une revue hal-02622497v1

Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics

Tom O. Delmont , A. Murat Eren , Lorrie Maccario , Emmanuel Prestat , Özcan C. Esen
Frontiers in Microbiology, 2015, 6, ⟨10.3389/fmicb.2015.00358⟩
Article dans une revue hal-01589179v1

Functional Basis of Microorganism Classification

Chengsheng Zhu , Tom O. Delmont , Timothy M. Vogel , Yana Bromberg
PLoS Computational Biology, 2015, 11 (8), ⟨10.1371/journal.pcbi.1004472⟩
Article dans une revue hal-01589154v1

Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment

Joseph Nesme , Sébastien Cecillon , Tom Delmont , Jean-Michel Monier , Timothy M. Vogel
Current Biology - CB, 2014, pp.voir DOI. ⟨10.1016/j.cub.2014.03.036⟩
Article dans une revue hal-00988678v1

Microbial community development and unseen diversity recovery in inoculated sterile soil

Tom Delmont , Davide Francioli , Sophie Jacquesson , Sandra Laoudi , Alban Mathieu
Biology and Fertility of Soils, 2014, 50 (7), pp.1069 - 1076. ⟨10.1007/s00374-014-0925-8⟩
Article dans une revue hal-01928111v1

Mastering methodological pitfalls for surviving the metagenomic jungle.

Tom Delmont , Pascal Simonet , Timothy M. Vogel
BioEssays, 2013, 35 (8), pp.744-54. ⟨10.1002/bies.201200155⟩
Article dans une revue hal-00846141v1

Life on Human Surfaces: Skin Metagenomics

Alban Mathieu , Tom Delmont , Timothy M. Vogel , Patrick Robe , Renaud Nalin
PLoS ONE, 2013, 8 (6), pp.e65288. ⟨10.1371/journal.pone.0065288⟩
Article dans une revue hal-00846134v1

Describing microbial communities and performing global comparisons in the 'omic era.

Tom Delmont , Pascal Simonet , Timothy M. Vogel
The International Society of Microbiologial Ecology Journal, 2012, 6 (9), pp.1625-8. ⟨10.1038/ismej.2012.55⟩
Article dans une revue hal-00747239v1

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

Tom Delmont , Emmanuel Prestat , Kevin P. Keegan , Michael Faubladier , Patrick Robe
The International Society of Microbiologial Ecology Journal, 2012, 6 (9), pp.1677-87. ⟨10.1038/ismej.2011.197⟩
Article dans une revue hal-00747243v1

Metagenomic exploration of antibiotic resistance in soil

Jean-Michel Monier , Sandrine Demanèche , Tom Delmont , Alban Mathieu , Timothy M Vogel
Current Opinion in Microbiology, 2011, 14 (3), pp.229-235. ⟨10.1016/j.mib.2011.04.010⟩
Article dans une revue hal-00629407v1

Metagenomic mining for microbiologists

Tom Delmont , Cédric Malandain , Emmanuel Prestat , Catherine Larose , Jean-Michel Monier
The International Society of Microbiologial Ecology Journal, 2011, 5 (12), pp.1837-1843. ⟨10.1038/ismej.2011.61⟩
Article dans une revue hal-00747250v1

Metagenomic comparison of direct and indirect soil DNA extraction approaches

Tom Delmont , Patrick Robe , Ian M. Clark , Pascal Simonet , Timothy M Vogel
Journal of Microbiological Methods, 2011, 86 (3), pp.397-400. ⟨10.1016/j.mimet.2011.06.013⟩
Article dans une revue hal-00629399v1

Accessing the Soil Metagenome for Studies of Microbial Diversity

Tom Delmont , Patrick Robe , Sébastien Cecillon , Ian M. Clark , Florentin Constancias
Applied and Environmental Microbiology, 2011, 77 (4), pp.1315-1324. ⟨10.1128/AEM.01526-10⟩
Article dans une revue hal-00579312v1

Mirusviruses link herpesviruses to giant viruses

Tom O. Delmont
Ringberg Symposium on Giant Virus Biology, Dec 2023, Ringberg, Germany
Communication dans un congrès hal-04412065v1

A la découverte des génomes du plancton avec TARA Oceans

Tom O. Delmont
AFEM (French national microbial ecology association), Oct 2023, Carqueiranne, France
Communication dans un congrès hal-04423118v1

Plankton genomics with Tara Oceans

Tom O. Delmont
Plankton genomics with Tara Oceans, Sep 2022, Dijon, France
Communication dans un congrès hal-04423087v1

Plankton genomics with Tara Oceans

Tom O. Delmont
AFEM (French national microbial ecology association), Jun 2022, Clermont - Ferrand, France
Communication dans un congrès hal-04423093v1

Plankton genomics with Tara Oceans

Tom O. Delmont
Symposium on Polar Microbes and Viruses, May 2022, Tvärminne Zoological Station, Finland
Communication dans un congrès hal-04423089v1

Plankton genomics with Tara Oceans

Tom O. Delmont
NeLLi Symposium on New Lineages of Life, JGI, Oct 2021, Online, United States
Communication dans un congrès hal-04423098v1

Diatom environmental genomes

Tom O. Delmont
Molecular Life Of Diatoms, Jul 2021, Online, United States
Communication dans un congrès hal-04423102v1

Genome-resolved metagenomics applied to marine microbial ecology

Tom O. Delmont
Nordic meeting in molecular microbial ecology, Sep 2019, Duhrevägen, Sweden
Communication dans un congrès hal-04423108v1

Soil and comparative environmental metagenomics

Timothy M Vogel , Catherine Larose , Pascal Simonet , Tom O. Delmont
Indo-French Workshop on Environmental Biotechnology (Molecular Ecology & Environmental Engineering), Feb 2015, Bhubaneswar, India
Communication dans un congrès hal-01974548v1

Managing microbial communities for finding new enzymes and sequentially reconstruct genomes from complex metagenomes

Pascal Simonet , Tom Delmont , Samuel Jacquiod , Laure Franqueville , Timothy M. Vogel
5th Congress of European Microbiologists (FEMS 2013), Jul 2013, Leipzig, Germany. pp.S32, SOIL METAGENOMICS, Hall 5
Communication dans un congrès hal-00932256v1

Criblage génétique d'une banque fosmidique d'ADN métagénomique d'un sol de référence pour la recherche de gènes fonctionnels d'intérêt industriel

Samuel Jacquiod , Sandrine Demanèche , Tom Delmont , Timothy M. Vogel , Pascal Simonet
VIème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Oct 2013, Parent, France
Communication dans un congrès hal-00925344v1

Managing microbial communities for sequentially reconstruct genomes from complex metagenomes

Tom Delmont , Timothy M. Vogel , Pascal Simonet
EGU, Apr 2013, Vienne, Austria. pp.1147
Communication dans un congrès hal-00821702v1

SOIL METAGENOMIC: WHERE IS THE DIVERSITY?

Tom Delmont , Florentin Constancias , Sébastien Cecillon , Elisabeth Navarro , Pascal Simonet
BAGECO 10 : Bacterial Genetics and Ecology – Coexisting on a Changing Planet, Jun 2009, Uppsala, Sweden
Communication dans un congrès hal-00399234v1

Mirusviruses: a complex evolutionary trajectory beyond realms

Morgan Gaïa , Lingjie Meng , Antonio Fernandez-Guerra , Hiroyuki Ogata , Mart Krupovic
5th Ringberg Symposium on Giant Virus Biology, Dec 2023, Tegernsee, Germany
Poster de conférence hal-04394603v1

Genome Sequence Databases: Types of Data and Bioinformatic Tools

Ana Gutiérrez-Preciado , Philippe Deschamps , Tom Delmont , Claudia Chica , Nathan A.M. Chrismas
Reference Module in Biomedical Sciences, Elsevier, 2019, ⟨10.1016/b978-0-12-801238-3.99223-7⟩
Chapitre d'ouvrage hal-02378810v1

Soil Metagenomic Exploration of the Rare Biosphere

Tom Delmont , Laure Franqueville , Samuel Jacquiod , Pascal Simonet , Timothy M. Vogel
Frans J. de Bruijn. Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches, Wiley-Blackwell, pp.287-298, 2011, 978-0-470-92418-1
Chapitre d'ouvrage hal-00925266v1