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Transcriptomic data reveal divergent paths of chitinase evolution underlying dietary convergence in anteaters and pangolins
Rémi Allio
,
Sophie Teullet
,
Dave Lutgen
,
Amandine Magdeleine
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Rachid Koual
Journal articles
hal-04890530v1
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Both nuclear and cytoplasmic polymorphisms are involved in genetic conflicts over male fertility in the gynodioecious snail, Physa acuta
Fanny Laugier
,
Nathanaëlle Saclier
,
Kévin Béthune
,
Axelle Braun
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Lara Konecny-Dupré
Journal articles
hal-04707802v1
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Environmental DNA Particle Size Distribution and Quantity Differ Across Taxa and Organelles
Héloïse Verdier
,
T. Datry
,
Maxime Logez
,
Lara Konecny-Dupré
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Maïlys Gauthier
Journal articles
hal-04739432v1
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A collaborative backbone resource for comparative studies of subterranean evolution: The World Asellidae database
Nathanaelle Saclier
,
Louis Duchemin
,
Lara Konecny-Dupré
,
Philippe Grison
,
David Eme
Journal articles
hal-04313500v1
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Subterranean species inventory in the molecular era
Florian Malard
,
Héloïse Verdier
,
Lara Konecny-Dupré
,
David Eme
,
Christophe J Douady
Karstologia, 2022
Journal articles
hal-03810304v1
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Transcriptome-wide deregulation of gene expression by artificial light at night in tadpoles of common toads
Morgane Touzot
,
Tristan Lefebure
,
Thierry Lengagne
,
Jean Secondi
,
Adeline Dumet
Journal articles
hal-03440101v1
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Passive sampling of environmental DNA in aquatic environments using 3D‐printed hydroxyapatite samplers
Héloïse Verdier
,
Lara Konecny‐dupre
,
Christophe Marquette
,
Helen Reveron
,
Solène Tadier
Journal articles
hal-03601922v1
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Extreme mitochondrial DNA divergence underlies genetic conflict over sex determination
Patrice David
,
Cyril Degletagne
,
Nathanaelle Saclier
,
Aurel Jennan
,
Philippe Jarne
Journal articles
hal-03765839v1
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Unlocking our understanding of intermittent rivers and ephemeral streams with genomic tools
Rosetta C Blackman
,
Florian Altermatt
,
Arnaud Foulquier
,
Tristan Lefébure
,
Maïlys Gauthier
Journal articles
hal-03369170v1
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Bedrock radioactivity influences the rate and spectrum of mutation
Nathanaëlle Saclier
,
Patrick Chardon
,
Florian Malard
,
Lara Konecny-Dupré
,
David Eme
Journal articles
hal-03051267v1
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Trophic selectivity in aquatic isopods increases with the availability of resources
Clémentine François
,
Laurent Simon
,
Florian Malard
,
Tristan Lefébure
,
Christophe Jean Douady
Journal articles
hal-02492518v1
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GOTIT: A laboratory application software for optimizing multi‐criteria species‐based research
Florian Malard
,
Philippe Grison
,
Louis Duchemin
,
Lara Konecny-Dupré
,
Tristan Lefébure
Journal articles
hal-02329439v1
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Enhancing DNA metabarcoding performance and applicability with bait capture enrichment and DNA from conservative ethanol
Maïlys Gauthier
,
Lara Konecny-Dupré
,
Agnès Nguyen
,
Vasco Elbrecht
,
T. Datry
Journal articles
hal-02328256v1
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Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods
Nathanaëlle Saclier
,
Clémentine François
,
Lara Konecny-Dupré
,
Nicolas Lartillot
,
Laurent Guéguen
Journal articles
hal-01951580v1
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Less effective selection leads to larger genomes
Tristan Lefébure
,
Claire Morvan
,
Florian Malard
,
Clémentine François
,
Lara Konecny-Dupré
Journal articles
hal-01544879v2
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Genome Content and Phylogenomics Reveal both Ancestral and Lateral Evolutionary Pathways in Plant-Pathogenic Streptomyces Species
José Huguet-Tapia
,
Tristan Lefébure
,
Jonathan H Badger
,
Dongli Guan
,
Gregg S. Pettis
Journal articles
hal-01329447v1
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No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes
Clémentine François
,
L. Duret
,
Laurent Simon
,
Florian Mermillod-Blondin
,
Florian Malard
Journal articles
hal-01370129v1
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Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli.
Vincent P. Richards
,
Tristan Lefébure
,
Paulina Pavinski Bitar
,
Belgin Dogan
,
Kenneth Simpson
Journal articles
hal-01292456v1
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Current developments in groundwater ecology -- from biodiversity to ecosystem function and services
Christian Griebler
,
Florian Malard
,
Tristan Lefébure
Journal articles
halsde-00958792v1
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Inflammation-associated adherent-invasive Escherichia coli are enriched in pathways for use of Propanediol and Iron and M-cell translocation
Belgin Dogan
,
Haruo Suzuki
,
Deepali Herlekar
,
Balfour Sartor
,
Barry J Campbell
Journal articles
hal-01332099v1
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Outcome of infection of C57BL/6 IL-10 mice with Campylobacter jejuni strains is correlated with genome content of open reading frames up- and down-regulated invivo
A. Bell, J.
,
J.P. Jerome
,
A.E. Plovanich-Jones
,
E.J. Smith
,
J.R. Gettings
Journal articles
halsde-00786264v1
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Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species. Infection
P. Richards Vincent
,
Tristan Lefébure
,
Paulina Pavinski Bitar
,
Michael J Stanhope
Journal articles
halsde-00787604v1
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Timetree of aselloidea reveals species diversification dynamics in groundwater
Claire Morvan
,
Florian Malard
,
Emmanuel Paradis
,
Tristan Lefébure
,
Lara Konecny-Dupré
Journal articles
halsde-00837844v1
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Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods
David Eme
,
Florian Malard
,
Lara Konecny-Dupré
,
Tristan Lefébure
,
Christophe Jean Douady
Journal articles
halsde-00921300v1
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Microsatellite Development and First Population Size Estimates for the Groundwater Isopod Proasellus walteri
Cécile Capderrey
,
Bernard Kaufmann
,
Pauline Jean
,
Florian Malard
,
Lara Konecny-Dupré
Journal articles
halsde-00876955v1
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Evolutionary and Population Genomics of the Cavity Causing Bacteria Streptococcus mutans
E. Cornejo Omar
,
Tristan Lefébure
,
Paulina Pavinski Bitar
,
Ping Lang
,
Vincent P. Richards
Journal articles
halsde-00814175v1
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Phenotypic Heterogeneity of Genomically-Diverse Isolates of Streptococcus mutans
R. Palmer Sara
,
H. Miller James
,
Jacqueline Abranches
,
Lin Zeng
,
Tristan Lefébure
Journal articles
halsde-00837811v1
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Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78T.
Changyou Lin
,
C. den Bakker Henk
,
Haruo Suzuki
,
Tristan Lefébure
,
Lalit Ponnala
Journal articles
halsde-00804898v1
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Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis
Vincent P Richards
,
Ruth N. Zadoks
,
Paulina D Pavinski Bitar
,
Tristan Lefébure
,
Ping Lang
Journal articles
halsde-00786423v1
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Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae
Haruo Suzuki
,
Tristan Lefébure
,
Paulina Pavinski Bitar
,
J. Stanhope Michael
Journal articles
halsde-00685689v1
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Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae
Tristan Lefébure
,
P. Richards Vince
,
Ping Lang
,
Paulina Pavinski Bitar
,
J. Stanhope Michael
Journal articles
halsde-00705729v1
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Progress dissecting the oral microbiome in caries and health
R.A. Burne
,
L. Zeng,
,
S.J. Ahn
,
S.R. Palmer
,
Yehan Liu
Journal articles
halsde-00734401v1
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Comparative genomic analysis of the streptococcus dysgalactiae species group : Gene content, molecular adaptation, and promoter evolution
Haruo Suzuki
,
Tristan Lefébure
,
Melissa Jane Hubisz
,
Paulina Pavinski Bitar
,
Ping Lang
Journal articles
halsde-00579903v1
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Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae
P. Richards Vincent
,
Ping Lang
,
D. Bitar Paulina
,
Tristan Lefébure
,
Ynte H. Schukken
Journal articles
halsde-00623049v1
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Evolutionary Dynamics of Complete Campylobacter Pan-Genomes and the Bacterial Species Concept
Tristan Lefébure
,
Paulina Pavinski Bitar
,
Haruo Suzuki
,
Michael J Stanhope
Journal articles
halsde-00958687v1
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Expanded Multilocus Sequence Typing and Comparative Genomic Hybridization of Campylobacter coli Isolates from Multiple Hosts
Ping Lang
,
Tristan Lefébure
,
Wei Wang
,
Paulina Pavinski Bitar
,
Richard J. Meinersmann
Journal articles
halsde-00958684v1
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Gene content differences across strains of Streptococcus uberis identified using oligonucleotide microarray comparative genomic hybridization
Ping Lang
,
Tristan Lefébure
,
W. Wang
,
Ruth N. Zadoks
,
Ynte Schukken
Journal articles
hal-03034836v1
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Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter
T. Lefébure
,
M. Stanhope
Journal articles
hal-03034739v1
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A molecular test for cryptic diversity in ground water : how large are the ranges of macro-stygobionts ? In: Freshwater Biology Special Issue, Assessing and Conserving Groundwater Biodiversity (Eds. J. Gibert & D.C. Culver)
Peter Trontelj
,
Christophe Jean Douady
,
Cene Fiser
,
Janine Gibert
,
Spela Goricki
Journal articles
halsde-00378197v1
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Relationships between environmental variables and groundwater biodiversity at the regional scale. In: Freshwater Biology Special Issue, Assessing and Conserving Groundwater Biodiversity (Eds. J. Gibert & D.C. Culver)
Marie-José Dole-Olivier
,
Florian Malard
,
Dominique P. Martin
,
Tristan Lefébure
,
Janine Gibert
Journal articles
halsde-00370421v1
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The imprint of quaternary glaciers on the present-day distribution of the obligate groundwater amphipod Niphargus virei (Niphargidae)
Arnaud Foulquier
,
Florian Malard
,
Tristan Lefébure
,
Christophe Jean Douady
,
Janine Gibert
Journal articles
halsde-00264658v1
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Positive selection in penicillin-binding proteins 1a, 2b, and 2x from Streptococcus pneumoniae and its correlation with amoxicillin resistance development
Michael Stanhope
,
Tristan Lefébure
,
Stacey Walsh
,
Julie Becker
,
Ping Lang
Journal articles
hal-03034737v1
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Testing dispersal and cryptic diversity in a widely distributed groundwater amphipod (Niphargus rhenorhodanensis).
T. Lefébure
,
Christophe Jean Douady
,
Florian Malard
,
Janine Gibert
Journal articles
halsde-00157625v1
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The relative frequency of intraspecific lateral gene transfer of penicillin binding proteins 1a, 2b, and 2x, in amoxicillin resistant Streptococcus pneumoniae
Michael Stanhope
,
Stacey Walsh
,
Tristan Lefébure
,
Ping Lang
,
Paulina Bitar
Journal articles
hal-03034686v1
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Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition
Tristan Lefébure
,
Michael J Stanhope
Journal articles
hal-03034694v1
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Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments
T. Lefébure
,
C.J. Douady
,
Manolo Gouy
,
P. Trontel
,
J. Briolay
Journal articles
hal-00427985v1
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Relationship between morphological taxonomy and molecular divergence within Crustacea : Proposal of a molecular threshold to help species delimitation
T. Lefébure
,
C.J. Douady
,
Manolo Gouy
,
J. Gibert
Journal articles
hal-00427988v1
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De l'influence des glaciations du Quaternaire sur les crustacés aquatiques souterains.
Christophe Jean Douady
,
Florian Malard
,
T. Lefébure
,
Julien Issartel
,
J. Azzarotto
Nature et Patrimoine en Pays de Savoie, 2006, 18 (3), pp.26-29
Journal articles
halsde-00157681v1
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