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Valentin Loux

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Valentin Loux is head of the INRAE Migale bioinformatics facility, part of the MaiAGE laboratory. [The Migale bioinformatics facility]( provides storage, computational resources and standard bioinformatics analyses pipelines and software for sequence analyses. Valentin Loux has an established expertise in the analysis of large scale metagenomics projects, annotation and comparison of bacterial genomes. **POSTIONS** **2015-Present :** Research Engineer in Bioinformatics, head of Migale Bioinformatics Facilty, INRAE, MaIAGE laboratory **2013-2019 :** Member of steering comitee of [France-Genomique project]( in charge of bionformatics development coordination **2002-2015 :** Bioinformatics Staff Engineer , INRAE Mig laboratory **CURSUS** **2002**: Master's degree in Bioinformatics (DESS), Versailles Saint-Quentin University


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Towards a more accurate metabarcoding approach for studying fungal communities of fermented foods

Olivier Rué , Monika Coton , Eric Dugat-Bony , Kate Howell , Françoise Irlinger
Peer Community Journal, 2023, ⟨10.24072/pci.microbiol.100007⟩
Journal articles hal-04234976v1
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Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach

Sandra Dérozier , Robert Bossy , Louise Deléger , Mouhamadou Ba , Estelle Chaix
PLoS ONE, 2023, 18 (1), pp.e0272473. ⟨10.1371/journal.pone.0272473⟩
Journal articles hal-03984703v1
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Comparison of metabarcoding taxonomic markers to describe fungal communities in fermented foods

Olivier Rué , Monika Coton , Eric Dugat-Bony , Kate Howell , Françoise Irlinger
Peer Community Journal, 2023, 3 (e97), pp.1-25. ⟨10.24072/pcjournal.321⟩
Journal articles hal-04237955v2
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Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates

Jeanne Laurentie , Valentin Loux , Christelle Hennequet-Antier , Emilie Chambellon , Julien Deschamps
MSphere, 2023, 8 (2), pp.e0049522. ⟨10.1128/msphere.00495-22⟩
Journal articles hal-04004063v1
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Gene co-expression network analysis of the human gut commensal bacterium Faecalibacterium prausnitzii in R-Shiny

Sandrine Auger , Virginie Mournetas , Hélène Chiapello , Valentin Loux , Philippe Langella
PLoS ONE, 2022, 17 (11), pp. e0271847. ⟨10.1371/journal.pone.0271847⟩
Journal articles hal-04083924v1
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Integration of Multiomic Data to Characterize the Influence of Milk Fat Composition on Cantal-Type Cheese Microbiota

Marie Frétin , Amaury Gérard , Anne Ferlay , Bruno Martin , S Buchin
Microorganisms, 2022, 10 (2), ⟨10.3390/microorganisms10020334⟩
Journal articles hal-03579395v1

Insights into the cyanosphere: capturing the respective metabolisms of cyanobacteria and chemotrophic bacteria in natural conditions?

Noémie Pascault , Olivier Rué , Valentin Loux , Jacques Pédron , Véronique Martin
Environmental Microbiology Reports, 2021, 13 (3), pp.364-374. ⟨10.1111/1758-2229.12944⟩
Journal articles hal-03287195v1

Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions

Franciele Pereira Camargo , Isabel Kimiko Sakamoto , Tiago Palladino Delforno , Mahendra Mariadassou , Valentin Loux
Journal of Environmental Management, 2021, 291, pp.112631. ⟨10.1016/j.jenvman.2021.112631⟩
Journal articles hal-03211333v1

Unraveling the world of halophilic and halotolerant bacteria in cheese by combining cultural, genomic and metagenomic approaches

Caroline Isabel Kothe , Alexander Bolotin , Bochra-Farah Kraïem , Bedis Dridi , Sandra Dérozier
International Journal of Food Microbiology, 2021, 358, pp.109312. ⟨10.1016/j.ijfoodmicro.2021.109312⟩
Journal articles hal-04311697v1
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Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industrially produced meat products subjected to changes in lactate concentration and packaging atmosphere

Simon Poirier , Ngoc-Du Martin Luong , Valérie Anthoine , Sandrine Guillou , Jeanne-Marie Membré
Data in Brief, 2020, 30, pp.1-8. ⟨10.1016/j.dib.2020.105453⟩
Journal articles hal-02914971v1

The complete genome sequence of Mycobacterium bovis Mb3601, a SB0120 spoligotype strain representative of a new clonal group

Maxime Branger , Valentin Loux , Thierry Cochard , Maria Laura Boschiroli , Franck Biet
Infection, Genetics and Evolution, 2020, 82, 4 p. ⟨10.1016/j.meegid.2020.104309⟩
Journal articles hal-02905303v1
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Abundance, Diversity and Role of ICEs and IMEs in the Adaptation of Streptococcus salivarius to the Environment

Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin , Virginie Libante
Journal articles hal-02922962v1

The enemy from within: a prophage of Roseburia intestinalis systematically turns lytic in the mouse gut, driving bacterial adaptation by CRISPR spacer acquisition

Jeffrey Cornuault , Elisabeth Moncaut , Valentin Loux , Aurélie Mathieu , Harry Sokol
The International Society of Microbiologial Ecology Journal, 2020, 14 (3), pp.771-787. ⟨10.1038/s41396-019-0566-x⟩
Journal articles hal-02504597v1

Bioinformatics tools and workflow to select blood biomarkers for early cancer diagnosis: an application to pancreatic cancer

Yves Vandenbrouck , David Christiany , Florence Combes , Valentin Loux , Virginie Brun
Proteomics, 2019, 19 (21-22), pp.e1800489. ⟨10.1002/pmic.201800489⟩
Journal articles hal-02296155v1

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater

Tiago P. Delforno , Thais Z. Macedo , Cedric Midoux , Gileno V. Lacerda , Olivier Rué
Science of the Total Environment, 2019, 2019 (649), pp.482-494. ⟨10.1016/j.scitotenv.2018.08.328⟩
Journal articles hal-01888286v1
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Effect of sodium chloride reduction or partial substitution with potassium chloride on the microbiological, biochemical and sensory characteristics of semi-hard and soft cheeses

Eric Dugat-Bony , Pascal Bonnarme , Sébastien Fraud , Jessie Catellote , Anne-Sophie Sarthou
Food Research International, 2019, 125, pp.108643. ⟨10.1016/j.foodres.2019.108643⟩
Journal articles hal-02349939v1
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Genomic diversity and evolution of the fish pathogen flavobacterium psychrophilum

Éric Duchaud , Tatiana Rochat , Christophe Habib , Paul Barbier , Valentin Loux
Frontiers in Microbiology, 2018, 9, pp.1-20. ⟨10.3389/fmicb.2018.00138⟩
Journal articles hal-02629284v1
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Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing

Simon Poirier , Olivier Rué , Raphaelle Peguilhan , Gwendoline Coeuret , Monique Zagorec
PLoS ONE, 2018, 13 (9), ⟨10.1371/journal.pone.0204629⟩
Journal articles hal-02621350v1
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Complete and Draft Genome Sequences of Nine Lactobacillus sakei Strains Selected from the Three Known Phylogenetic Lineages and Their Main Clonal Complexes

Valentin Loux , Gwendoline Coeuret , Monique Zagorec , Marie-Christine Champomier-Verges , Stephane Chaillou
Genome Announcements, 2018, 6 (16), 3 p. ⟨10.1128/genomeA.00082-18⟩
Journal articles hal-02619093v1

Transcriptomic response of Debaryomyces hansenii during mixed culture in a liquid model cheese medium with Yarrowia lipolytica

Reine Malek , Pascal Bonnarme , Francoise Irlinger , Pascale Frey-Klett , Djamila Onesime
International Journal of Food Microbiology, 2018, 264, pp.53-62. ⟨10.1016/j.ijfoodmicro.2017.10.026⟩
Journal articles hal-01695894v1
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Complete genome sequence of the industrial fast-acidifying strain Streptococcus thermophilus N4L

Lucas Proust , Valentin Loux , Veronique Martin , Cristian Magnabosco , Martin Pedersen
Microbiology Resource Announcements, 2018, 7 (8), ⟨10.1128/MRA.01029-18⟩
Journal articles hal-02628963v1
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Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products

Simon Poirier , Olivier Rué , Gwendoline Coeuret , Marie-Christine Champomier-Verges , Valentin Loux
BMC Research Notes, 2018, 11 (1), pp.1-5. ⟨10.1186/s13104-018-3908-2⟩
Journal articles hal-02048857v1
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Draft Genome Sequences of 18 Psychrotolerant and 2 Thermotolerant Strains Representative of Particular Ecotypes in the Bacillus cereus Group

Marie Helene Guinebretière , Valentin Loux , Véronique Martin , Pierre Nicolas , Vincent Sanchis Borja
Genome Announcements, 2017, 5 (5), 3 p. ⟨10.1128/genomeA.01568-16⟩
Journal articles hal-01602632v1
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Complete Genome Sequence of Flavobacteriumpsychrophilum Strain OSU THCO2-90, Used for Functional Genetic Analysis.

Tatiana Rochat , Paul Barbier , Pierre Nicolas , Valentin Loux , David Perez Pascual
Genome Announcements, 2017, 5 (23), 2 p. ⟨10.1128/genomeA.01665-16⟩
Journal articles hal-01607798v1
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Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue

Hela El Kafsi , Valentin Loux , Mahendra Mariadassou , Camille Blin , Hélène Chiapello
Scientific Reports, 2017, 7, pp.1-11. ⟨10.1038/srep44331⟩
Journal articles hal-01509688v1
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A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins

Charles Coluzzi , Gérard Guédon , Marie-Dominique Devignes , Chloé C. Ambroset , Valentin Loux
Frontiers in Microbiology, 2017, 8, pp.16. ⟨10.3389/fmicb.2017.00443⟩
Journal articles hal-01580789v1

Whole genome sequencing of 7 strains of Staphylococcus lugdunensis allows identification of mobile genetic elements

Xavier Argemi , Veronique Martin , Valentin Loux , Sandrine Dahyot , Jérémie Lebeurre
Genome Biology and Evolution, 2017, 9 (5), pp.1183-1189. ⟨10.1093/gbe/evx077⟩
Journal articles hal-01604276v1
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Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study

Stéphanie-Marie Deutsch , Mahendra Mariadassou , Pierre Nicolas , Sandrine Parayre , Rozenn Le Guellec
Scientific Reports, 2017, 7, pp.46409. ⟨10.1038/srep46409⟩
Journal articles hal-01510019v1
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The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes

Vincent J. Henry , Anne Goelzer , Arnaud Ferré , Stéphan Fischer , Marc Dinh
Journal of Biomedical Semantics, 2017, 8 (53), 16 p. ⟨10.1186/s13326-017-0165-6⟩
Journal articles hal-01652923v1

Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: a reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group

Eugene Christo-Foroux , Tatiana Vallaeys , Valentin Loux , Elie Dassa , Josef Deutscher
Systematic and Applied Microbiology, 2017, 40 (7), pp.401-410. ⟨10.1016/j.syapm.2017.07.002⟩
Journal articles hal-01604275v1

La génomique comparative à l’ère des technologies NGS

Thomas Lacroix , Jean-Francois Gibrat , Valentin Loux
Biofutur, 2017, 36 (382), pp.42-45
Journal articles hal-01603170v1

Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT.

Thomas Lacroix , Sylvie Thérond , Marc Rugeri , Pierre P. Nicolas , Annie Gendrault
Bioinformatics, 2016, 32 (7), pp.1083-1084. ⟨10.1093/bioinformatics/btv689⟩
Journal articles hal-02630699v1
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Draft genome sequence of Corynebacterium variabile Mu292, isolated from Munster, a french smear-ripened cheese

Eric Dugat-Bony , Anne-Sophie Sarthou , Valentin Loux , Marie Vidal , Pascal Bonnarme
Genome Announcements, 2016, 4 (4), ⟨10.1128/genomeA.00669-16⟩
Journal articles hal-01480898v1
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Complete Genome Sequence of Lactococcus lactissubsp. lactis A12, a Strain Isolated from Wheat Sourdough

Maeva Guellerin , Delphine Passerini , Catherine Fontagné-Faucher , Hervé Robert , Valérie Gabriel
Genome Announcements, 2016, 4 (5), pp.2 P. ⟨10.1128/genomeA.00692-16⟩
Journal articles hal-01578250v1
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Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20).

Hélène Falentin , Stéphanie-Marie Deutsch , Valentin Loux , Amal Hammani , Julien Buratti
Standards in Genomic Sciences, 2016, 11, pp.6. ⟨10.1186/s40793-015-0120-z⟩
Journal articles hal-02640172v1
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Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus CFL1, a Lactic Acid Bacterium Isolated from French Handcrafted Fermented Milk

Julie Meneghel , Eric Dugat-Bony , Françoise Irlinger , Valentin Loux , Marie Vidal
Genome Announcements, 2016, 4 (2), pp.e00052-16. ⟨10.1128/genomeA.00052-16⟩
Journal articles hal-01511494v1
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New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration

Chloé C. Ambroset , Charles Coluzzi , Gérard Guédon , Marie-Dominique Devignes , Valentin Loux
Frontiers in Microbiology, 2016, 6 (6), pp.1483. ⟨10.3389/fmicb.2015.01483⟩
Journal articles hal-01262284v1
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Draft Anaplasma phagocytophilum Genome Sequences from Five Cows, Two Horses, and One Roe Deer Collected in Europe.

Thibaud Dugat , Marie-Noelle Rossignol , Olivier Rué , Valentin Loux , Sylvain Marthey
Genome Announcements, 2016, 4 (6), 2 p. ⟨10.1128/genomeA.00950-16⟩
Journal articles hal-01594527v1
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Genome Sequences of Two Bovine Mastitis-Causing [i]Escherichia coli[/i] Strains

Florent Kempf , Valentin Loux , Pierre Germon
Genome Announcements, 2015, 3 (2), pp.1. ⟨10.1128/genomeA.00259-15⟩
Journal articles hal-01171499v1
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Overview of a surface-ripened cheese community functioning by meta-omics analyses

Eric Dugat-Bony , Cecile Straub , Aurélie Teissandier , Djamila Onesime , Valentin Loux
PLoS ONE, 2015, 10 (4), pp.e0124360. ⟨10.1371/journal.pone.0124360⟩
Journal articles hal-01195505v1

Inventory of the GH70 enzymes encoded by Leuconostoc citreum NRRL B-1299 - identification of three novel -transglucosylases

Delphine Passerini , Marlène Vuillemin , Lisa Ufarté , Sandrine Morel , Valentin Loux
FEBS Journal, 2015, 282 (11), pp.2115-2130. ⟨10.1111/febs.13261⟩
Journal articles hal-02630462v1
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Surface proteins of Propionibacterium freudenreichii are involved in its anti-inflammatory properties.

Caroline Le Maréchal , Vincent Péton , Coline Plé , Christophe Vroland , Julien Jardin
Journal of Proteomics, 2015, 113, pp.447-461. ⟨10.1016/j.jprot.2014.07.018⟩
Journal articles hal-01209735v1
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida , Hélène Chiapello , Amal Hammani
BMC Genomics, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩
Journal articles hal-01142363v1

Data from an integrative approach decipher the surface proteome of [i]Propionibacterium freudenreichii[/i]

Caroline Le Maréchal , Vincent Péton , Coline Le Plenier , Christophe Vroland , Julien Jardin
Data in Brief, 2014, 1, pp.46-50. ⟨10.1016/j.dib.2014.08.009⟩
Journal articles hal-01209746v1
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Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products

Mathieu Almeida , Agnes Hebert , Anne-Laure Abraham , Simon Rasmussen , Christophe Monnet
BMC Genomics, 2014, 15, article 1101 (16 p.). ⟨10.1186/1471-2164-15-1101⟩
Journal articles hal-01195502v1
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Bacterial protein signals are associated with Crohn's disease.

Catherine Juste , David P Kreil , Christian Beauvallet , Alain Guillot , Sebastian Vaca
Gut, 2014, 63 (10), pp.1566-1577. ⟨10.1136/gutjnl-2012-303786⟩
Journal articles hal-00933734v1
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Transcriptomic analysis of Staphylococcus xylosus in the presence of nitrate and nitrite in meat reveals its response to nitrosative stress

Aurore Vermassen , Anne de La Foye , Valentin Loux , Régine Talon , Sabine Leroy
Frontiers in Microbiology, 2014, 5, n.p. ⟨10.3389/fmicb.2014.00691⟩
Journal articles hal-02631923v1
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Genome Sequence of "Candidatus Arthromitus" sp. Strain SFB-Mouse-NL, a Commensal Bacterium with a Key Role in Postnatal Maturation of Gut Immune Functions.

Alexandre Bolotine , Tomas de Wouters , Pamela Schnupf , Christiane Bouchier , Valentin Loux
Genome Announcements, 2014, 2 (4), ⟨10.1128/genomeA.00705-14⟩
Journal articles hal-01204391v1
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Genome sequence of[i] Lactobacillus delbrueckii[/i] subsp. [i]lactis[/i] CNRZ327, a dairy bacterium with anti-inflammatory properties.

Hela El Kafsi , Johan Binesse , Valentin Loux , Julien Buratti , Samira Boudebbouze
Genome Announcements, 2014, 2 (4), pp.1-2. ⟨10.1128/genomeA.00328-14⟩
Journal articles hal-01204323v1
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Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61.

Hélène Falentin , Delphine Naquin , Valentin Loux , Frédérique Barloy-Hubler , Pascal Loubière
Genome Announcements, 2014, 2 (1), pp.1. ⟨10.1128/genomeA.01176-13⟩
Journal articles hal-01019560v1
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Insyght: navigating amongst abundant homologues, syntenies and gene functional annotations in bacteria, it's that symbol!

Thomas Lacroix , Valentin Loux , Annie Gendrault , Mark Hoebeke , Jean-François Gibrat
Nucleic Acids Research, 2014, 42 (21), pp.e162. ⟨10.1093/nar/gku867⟩
Journal articles hal-01332638v1

Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems

Noémie Pascault , Valentin Loux , Sandra Derozier , Véronique Martin , Didier Debroas
Genetica, 2014, 143 (2), pp.25216965. ⟨10.1007/s10709-014-9783-4⟩
Journal articles hal-01110172v1
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Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis subsp. lactis TOMSC161, Isolated from a Nonscalded Curd Pressed Cheese

Hélène Velly , Pierre Renault , Anne-Laure Abraham , Valentin Loux , Agnes Delacroix-Buchet
Genome Announcements, 2014, 2 (6), ⟨10.1128/genomeA.01121-14⟩
Journal articles hal-01193999v1
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Complete Genome Sequence of Leuconostoc citreum Strain NRRL B-742

Delphine Passerini , Marlène Vuillemin , S. Laguerre , Myriam Amarir , Valentin Loux
Genome Announcements, 2014, 2 (6), ⟨10.1128/genomeA.01179-14⟩
Journal articles hal-02637077v1
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Lactobacillus delbrueckii ssp. lactis and ssp. bulgaricus: a chronicle of evolution in action.

Hela El Kafsi , Johan Binesse , Valentin Loux , Julien Buratti , Samira Boudebbouze
BMC Genomics, 2014, 15 (1), pp.407. ⟨10.1186/1471-2164-15-407⟩
Journal articles pasteur-01017376v1
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Comparative genomics of first available bovine Anaplasma phagocytophilum genome obtained with targeted sequence capture.

Thibaud Dugat , Valentin Loux , Sylvain Marthey , Marco Moroldo , Anne-Claire Lagrée
BMC Genomics, 2014, 15 (1), pp.973. ⟨10.1186/1471-2164-15-973⟩
Journal articles hal-01193998v1
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Draft genome sequence of Lactobacillus hominis strain CRBIP 24.179τ, isolated from human intestine

Sylvie Cousin , Sophie Creno , Laurence Ma , Dominique Clermont , Valentin Loux
Genome Announcements, 2013, 1 (4), pp.1. ⟨10.1128/genomeA.00662-13⟩
Journal articles hal-00939673v1

Draft genome sequences of five strains of [i]Lactobacillus acidophilus[/i] , strain CIP 76.13 T , isolated from humans, strains CIRM-BIA 442 and CIRM-BIA 445, isolated from dairy products, and strains DSM 20242 and DSM 9126 of unknown origin

Hélène Falentin , Sylvie Cousin , Dominique Clermont , Sophie Creno , Florence Ma
Genome Announcements, 2013, 1 (4), pp.e00658-13. ⟨10.1128/genomeA.00658-13⟩
Journal articles hal-01209470v1
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Draft genome sequences of Lactobacillus equicursoris CIP 110162τ and Lactobacillus sp. strain CRBIP 24.137, isolated from thoroughbred racehorse feces and human urine, respectively

Sylvie Cousin , Valentin Loux , Laurence Ma , Sophie Creno , Dominique Clermont
Genome Announcements, 2013, 1 (4), pp.1-2. ⟨10.1128/genomeA.00663-13⟩
Journal articles hal-02645656v1
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Complete chromosome sequence of Carnobacterium maltaromaticum LMA 28.

Catherine C. Cailliez-Grimal , Stephane S. Chaillou , Jamila J. Anba-Mondoloni , Valentin Loux , Muhammad Inam M. I. Afzal
Genome Announcements, 2013, 1 (1), pp.1-2. ⟨10.1128/genomeA.00115-12⟩
Journal articles hal-00939584v1
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Draft Genome Sequence of [i][/i] Lactobacillus pasteurii[i][/i] CRBIP 24.76T.

Sylvie Cousin , Dominique Clermont , Sophie Creno , Laurence Ma , Valentin Loux
Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00660-13⟩
Journal articles hal-01190531v1
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A unique in vivo experimental approach reveals metabolic adaptation of the probiotic Propionibacterium freudenreichii to the colon environment.

Taous Saraoui , Sandrine Parayre , Grégory Guernec , Valentin Loux , Jérôme Montfort
BMC Genomics, 2013, 14 (1), pp.911. ⟨10.1186/1471-2164-14-911⟩
Journal articles inserm-00923652v1

Accumulation of Intracellular Glycogen and Trehalose by Propionibacterium freudenreichii under Conditions Mimicking Cheese Ripening in the Cold

Marion Dalmasso , Julie Aubert , Sergine Even , Hélène Falentin , Marie-Bernadette Maillard
Applied and Environmental Microbiology, 2012, 78 (17), pp.6357-6364. ⟨10.1128/AEM.00561-12⟩
Journal articles hal-02363390v1
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Genome sequence of Staphylococcus equorum subsp equorum Mu2, Isolated from a french smear-ripened cheese

Francoise Irlinger , Valentin Loux , Pascal Bento , Jean-Francois Gibrat , Cecile Straub
Journal of Bacteriology, 2012, 194 (18), pp.5141-5142. ⟨10.1128/JB.01038-12⟩
Journal articles hal-01019837v1
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Genome sequence of weissella confusa LBAE C39-2, isolated from a wheat sourdough

Myriam Amari , Sandrine Laguerre , Marlène Vuillemin , Hervé Robert , Valentin Loux
Journal of Bacteriology, 2012, 194 (6), pp.1608-1609. ⟨10.1128/JB.06788-11⟩
Journal articles hal-01267779v1
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Genome sequence of corynebacterium casei UCMA 3821, isolated from a smear-ripened cheese

Christophe C. Monnet , Valentin Loux , Pascal P. Bento , Jean-Francois J.-F. Gibrat , Cecile C. Straub
Journal of Bacteriology, 2012, 194 (3), pp.738-739. ⟨10.1128/JB.06496-11⟩
Journal articles hal-01000221v1
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Genome sequence of Lactococcus raffinolactis strain 4877, isolated from natural dairy starter culture

Victoria Meslier Meslier , Valentin Loux , Pierre Renault
Journal of Bacteriology, 2012, 194 (22), pp.6364. ⟨10.1128/JB.01697-12⟩
Journal articles hal-01000376v1
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Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysis

Sophie S. Schbath , Veronique V. Martin , Matthias Zytnicki , Julien Fayolle , Valentin Loux
Journal of Computational Biology, 2012, 19 (6), pp.796-813. ⟨10.1089/cmb.2012.0022⟩
Journal articles hal-02645697v1

Genome sequence of Leuconostoc pseudomesenteroides strain 4882, isolated from a dairy starter culture

Victoria Meslier Meslier , Valentin Loux , Pierre Renault
Journal of Bacteriology, 2012, 194 (23), pp.6637. ⟨10.1128/JB.01696-12⟩
Journal articles hal-01000375v1

Genome sequence of the persistent Salmonella enterica subsp enterica Serotype Senftenberg Strain SS209

Olivier Grépinet , Zineb Boumart , Isabelle Virlogeux-Payant , Valentin Loux , Hélène Chiapello
Journal of Bacteriology, 2012, 194 (9), pp.2385-2386. ⟨10.1128/JB.00255-12⟩
Journal articles hal-02643377v1

Genome sequences of three Leuconostoc Citreum Strains, LBAE C10, LBAE C11, and LBAE E16, isolated from wheat sourdoughs

Sandrine Laguerre , Myriam Amari , Marlène Vuillemin , Hervé Robert , Valentin Loux
Journal of Bacteriology, 2012, 194 (6), pp.1610-1611. ⟨10.1128/JB.06789-11⟩
Journal articles hal-01267778v1

Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water

Paul Barbier , Armel A. Houel , Valentin Loux , Julie Poulain , Jean Francois J. F. Bernardet
Journal of Bacteriology, 2012, 194 (11), pp.3024-3025. ⟨10.1128/JB.00420-12⟩
Journal articles hal-02643519v1

Genome Sequence of the Invasive Salmonella enterica subsp. enterica Serotype Enteritidis Strain LA5

Olivier Grépinet , Aurore Rossignol , Valentin Loux , Helene Chiapello , Annie Gendrault
Journal of Bacteriology, 2012, 194 (9), pp.2387-2388. ⟨10.1128/JB.00256-12⟩
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Accumulation of intracellular glycogen and trehalose by [i]Propionibacterium Freudenreichii[/i] under conditions mimicking cheese ripening in the cold

Marion Dalmasso , Julie Aubert , Sergine Even , Hélène Falentin , Marie-Bernadette Maillard
Applied and Environmental Microbiology, 2012, 78 (17), pp.6357-6364. ⟨10.1128/AEM.00561-12⟩
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Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232

Christine C. Delorme , Claire C. Bartholini , Mélanie M. Luraschi , Nicolas N. Pons , Valentin Loux
Journal of Bacteriology, 2011, 193 (19), pp.5581-5582. ⟨10.1128/JB.05404-11⟩
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Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777

Eric Guédon , Christine Delorme , Nicolas Pons , Corinne Cruaud , Valentin Loux
Journal of Bacteriology, 2011, 193 (18), pp.5024-5025. ⟨10.1128/JB.05390-11⟩
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Exploration of sulfur metabolism in the yeast Kluyveromyces lactis

Agnes A. Hebert , Marie-Pierre Forquin Forquin-Gomez , Aurélie A. Roux , Julie J. Aubert , Christophe C. Junot
Applied Microbiology and Biotechnology, 2011, 91 (5), pp.1409-1423. ⟨10.1007/s00253-011-3481-2⟩
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CompaGB: An open framework for genome browsers comparison

Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Jean-François Gibrat , Hélène Chiapello
BMC Research Notes, 2011, 4, pp.133. ⟨10.1186/1756-0500-4-133⟩
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Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3

Christine C. Delorme , Eric Guédon , Nicolas N. Pons , Corinne Cruaud , Arnaud A. Couloux
Journal of Bacteriology, 2011, 193 (18), pp.5041-5042. ⟨10.1128/JB.05416-11⟩
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Characterization of the insoluble proteome of lactococcus lactis by SDS-PAGE LC-MS/MS leads to the identification of new markers of adaptation of the bacteria to the mouse digestive tract

Jasna Beganovic , Alain A. Guillot , Maarten van de Guchte , Anne Jouan , Christophe C. Gitton
Journal of Proteome Research, 2010, 9 (2), pp.677-688
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