Valentin Loux
182
Documents
Identifiants chercheurs
- valentin-loux
- 0000-0002-8268-915X
- Google Scholar : https://scholar.google.fr/citations?user=j4FDjDgAAAAJ&hl=fr&oi=ao
- IdRef : 253136016
Présentation
Valentin Loux is head of the INRAE Migale bioinformatics facility, part of the MaiAGE laboratory. [The Migale bioinformatics facility](https://migale.inrae.fr) provides storage, computational resources and standard bioinformatics analyses pipelines and software for sequence analyses.
Valentin Loux has an established expertise in the analysis of large scale metagenomics projects, annotation and comparison of bacterial genomes.
**POSTIONS**
**2015-Present :** Research Engineer in Bioinformatics, head of Migale Bioinformatics Facilty, INRAE, MaIAGE laboratory
**2013-2019 :** Member of steering comitee of [France-Genomique project](https://www.france-genomique.org) in charge of bionformatics development coordination
**2002-2015 :** Bioinformatics Staff Engineer , INRAE Mig laboratory
**CURSUS**
**2002**: Master's degree in Bioinformatics (DESS), Versailles Saint-Quentin University
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Origins and rate of mutations in bacteriophage LambdaPhages in Lyon 2023, phages.fr, Nov 2023, Lyon, France
Communication dans un congrès
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MetaPDOcheese : investigation of the drivers of microbial communities from French PDO milks and cheesesFORUM ON FERMENTED FOODS, COST PIMENTO, May 2023, Lyon, France
Communication dans un congrès
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Variable and core functional rhizosphere microbiota associated with seven Medicago truncatula genotypesJournée doctorants UMR Agroécologie, Nov 2023, Dijon, France
Communication dans un congrès
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Variable and core functional microbiota associated with seven Medicago truncatula genotypes12th International PGPR Workshop 2023, May 2023, Toulouse, France
Communication dans un congrès
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Migale et son offre de service de text-miningJournées du PEPI IBIS, INRAE, Sep 2023, Paris, France
Communication dans un congrès
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Mobile Genetic Elements transferring by conjugation in the human commensal bacterium Streptococcus salivarius: abundance, diversity and role in the adaptation to environment.Réunion du GDR3546 Eléments transposables, Dec 2021, Paris, France
Communication dans un congrès
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Evidences for different abilities of human gut bacteria to metabolise prebiotics for the benefits of the digestive health and wellness.International Scientific Association for Probiotics and Prebiotics Annual Meeting, Jun 2021, Online conference, France
Communication dans un congrès
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Prebiotics for digestive health and wellness: how to successfully promote the gut microbiome?Society for Applied Microbiology Early Career Scientist Research Symposium, Mar 2021, Online Conference, France
Communication dans un congrès
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Impact of dietary fibers and prebiotics on the gut microbiota: consequences on the digestive health and wellness.ABIES Days, Sep 2020, Paris, France
Communication dans un congrès
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A workflow to build a relevant and reduced bacterial dataset from NCBIJOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France
Communication dans un congrès
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Shotgun metagenomics sequencing of the rhizosphere microbiota associated to seven ecotypes of Medicago truncatulaRhizosphere 5, Jul 2019, Saskatoon, Saskatchewan, Canada
Communication dans un congrès
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Evaluation of gyrB amplicon sequencing in comparison to 16S rDNA amplicon sequencing to evaluate intra-species bacterial diversity in food microbiotaJOBIM 20. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France
Communication dans un congrès
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A metagenomic tool for cheese ecosystems17. European Conference on Computational Biology (ECCB 2018, Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2018, Athenes, Greece
Communication dans un congrès
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L'ontologie OntoBiotope pour l'étude de la biodiversité microbienneEGC'2018: 18èmes Conférence Internationale sur l'Extraction et la Gestion des Connaissances, Jan 2018, Paris, France
Communication dans un congrès
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Functional signatures of soil fungal communities in response to forest tree phenology revealed by metatranscriptome analysis3rd MPItM-Labex ARBRE Workshop, Nov 2018, cologne, Germany
Communication dans un congrès
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The journey of a team of engineers in learning packaging technologyGalaxy Community Conference - GCC2018, Jun 2018, Portland, United States
Communication dans un congrès
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Des microbes dans mon fromage ?Journées Nationales de la Science Ouverte, Dec 2018, Paris, France
Communication dans un congrès
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Florilège: a database gathering microbial phenotypes of food interest2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Communication dans un congrès
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Food-Microbiomes Transfert, a shotgun metagenomic tool and a database to analyze cheese ecosystemsJOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France
Communication dans un congrès
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Représentation systémique multi-échelle des processus biologiques de la bactérieIC2016 - Ingénierie des Connaissances, Jun 2016, Montpellier, France
Communication dans un congrès
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Représentation systémique multi-échelle des processus biologiques de la bactérieIC201: 27es Journées francophones d'Ingénierie des Connaissances, Jun 2016, Montpellier, France
Communication dans un congrès
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Deciphering why Salmonella Gallinarum is less invasive in vitro than Salmonella EnteritidisI3S International Symposium Salmonella and Salmonellosis, Institut National de la Recherche Agronomique (INRA). FRA., May 2013, Saint Malo, France
Communication dans un congrès
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Mapping reads on a genomic sequence: a practical comparative analysisKick-of meeting of PF7 RADIANT project, Jan 2013, Manchester, United Kingdom. 19 diapos
Communication dans un congrès
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Mapping reads on a genomic sequence: a practical comparative analysisJournées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jul 2012, Rennes, France. pp.496
Communication dans un congrès
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Genomic diversity of Flavobacterium species.Flavobacterium 2012, 2012, Turku, Finland
Communication dans un congrès
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Genomic diversity of 24 Propionibacterium freudenreichii 1 strains6 Conference on Functional Genomics of Gram-positive Microorganisms 16 International Conference on Bacilli, Jun 2011, Montecatini, Italy
Communication dans un congrès
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SURFING: A national project to understand immunomodulatury effects of dairy starters2nd International Symposium "Microbes For Health", Dec 2011, Paris, France
Communication dans un congrès
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Web services for microbial genome annotation using data integrationJOBIM 2010 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France
Communication dans un congrès
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Evaluating Genome Browsers Using a Software Qualification Method EvaluationJOBIM 2010, Sep 2010, Montpellier, France. pp.196
Communication dans un congrès
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Bactéries pathogènes des poissons du genre Flavobacterium2. Journées de la Recherche Filière Piscicole, Jul 2009, Paris, France. 1 p
Communication dans un congrès
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INSYGT : a multi-genes multi-genomes browser that highlights synteny conservation in prokaryotes.JOBIM 2008, Jun 2008, Lille, France. 2 p
Communication dans un congrès
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Towards a semi-automatic functional annotation tool based on decision tree techniquesMachine Learning in Systems Biology: MLSB 2007, Sep 2007, Evry, France
Communication dans un congrès
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La séquence complète du génome de la bactérie de la viande Lactobacillus sakeiSymposium SFM, Interactions Bactériennes dans les Environnements Agroalimentaires : Apport des Nouvelles Approches., Société Française de Microbiologie (SFM). FRA., Nov 2006, Paris, France
Communication dans un congrès
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Genome project of the meat born lactic acid bacterium Lactobacillus sakei 23K: understanding bacterial adaptation to meat and paving the way to the development of biopreservative cultures2. European Conference on Prokaryotic Genomes, Oct 2005, Göttingen, Germany
Communication dans un congrès
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Premiers regards sur le génome d’une bactérie lactique originale : structure, polymorphisme et analyse génétique ciblée du chromosome de Lactobacillus sakei 23K13. Colloque du Club des Bactéries Lactiques, Sep 2004, Nantes, France. 142 p
Communication dans un congrès
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GO enrichment analysis for differential proteomics using ProteoREProteomics Data Analysis, 2361, pp.179-196, 2021, Methods in Molecular Biology book series (MIMB), ⟨10.1007/978-1-0716-1641-3_11⟩
Chapitre d'ouvrage
hal-03324650v1
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Designing an in silico strategy to select tissue-leakage biomarkers using the galaxy frameworkProteomics for biomarker discovery: Methods and protocols, 1959, pp.275-289, 2019, Methods in Molecular Biology book series (MIMB), ISBN: 978-1-4939-9164-8. ⟨10.1007/978-1-4939-9164-8_18⟩
Chapitre d'ouvrage
hal-02284981v1
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Introduction à l'annotation fonctionnelle in silicoBio-informatique - principes d'utilisation des outils, Editions Quae, 2010, 978-2-7592-0870-8
Chapitre d'ouvrage
hal-02812661v1
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Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach2022
Pré-publication, Document de travail
hal-03828105v1
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Insyght2014
Logiciel
hal-02795962v1
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