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Valentin Loux

19
Documents
Identifiants chercheurs

Présentation

Valentin Loux is head of the INRAE Migale bioinformatics facility, part of the MaiAGE laboratory. [The Migale bioinformatics facility](https://migale.inrae.fr) provides storage, computational resources and standard bioinformatics analyses pipelines and software for sequence analyses. Valentin Loux has an established expertise in the analysis of large scale metagenomics projects, annotation and comparison of bacterial genomes. **POSTIONS** **2015-Present :** Research Engineer in Bioinformatics, head of Migale Bioinformatics Facilty, INRAE, MaIAGE laboratory **2013-2019 :** Member of steering comitee of [France-Genomique project](https://www.france-genomique.org) in charge of bionformatics development coordination **2002-2015 :** Bioinformatics Staff Engineer , INRAE Mig laboratory **CURSUS** **2002**: Master's degree in Bioinformatics (DESS), Versailles Saint-Quentin University

Publications

"lacroix-thomas"
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Abundance, Diversity and Role of ICEs and IMEs in the Adaptation of Streptococcus salivarius to the Environment

Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin , Virginie Libante
Article dans une revue hal-02922962v1
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A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins

Charles Coluzzi , Gérard Guédon , Marie-Dominique Devignes , Chloé C. Ambroset , Valentin Loux
Frontiers in Microbiology, 2017, 8, pp.16. ⟨10.3389/fmicb.2017.00443⟩
Article dans une revue hal-01580789v1

La génomique comparative à l’ère des technologies NGS

Thomas Lacroix , Jean-Francois Gibrat , Valentin Loux
Biofutur, 2017, 36 (382), pp.42-45
Article dans une revue hal-01603170v1

Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT.

Thomas Lacroix , Sylvie Thérond , Marc Rugeri , Pierre P. Nicolas , Annie Gendrault
Bioinformatics, 2016, 32 (7), pp.1083-1084. ⟨10.1093/bioinformatics/btv689⟩
Article dans une revue hal-02630699v1
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New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration

Chloé C. Ambroset , Charles Coluzzi , Gérard Guédon , Marie-Dominique Devignes , Valentin Loux
Frontiers in Microbiology, 2016, 6 (6), pp.1483. ⟨10.3389/fmicb.2015.01483⟩
Article dans une revue hal-01262284v1
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Insyght: navigating amongst abundant homologues, syntenies and gene functional annotations in bacteria, it's that symbol!

Thomas Lacroix , Valentin Loux , Annie Gendrault , Mark Hoebeke , Jean-François Gibrat
Nucleic Acids Research, 2014, 42 (21), pp.e162. ⟨10.1093/nar/gku867⟩
Article dans une revue hal-01332638v1
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CompaGB: An open framework for genome browsers comparison

Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Jean-François Gibrat , Hélène Chiapello
BMC Research Notes, 2011, 4, pp.133. ⟨10.1186/1756-0500-4-133⟩
Article dans une revue hal-02644023v1

Prebiotics for digestive health and wellness: how to successfully promote the gut microbiome?

Cassandre Bedu-Ferrari , Paul Biscarrat , Sarah Vati , Cyril Chaudemanche , Valerie Benoit
Society for Applied Microbiology Early Career Scientist Research Symposium, Mar 2021, Online Conference, France
Communication dans un congrès hal-04285885v1

Mobile Genetic Elements transferring by conjugation in the human commensal bacterium Streptococcus salivarius: abundance, diversity and role in the adaptation to environment.

Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin , Virginie Libante
Réunion du GDR3546 Eléments transposables, Dec 2021, Paris, France
Communication dans un congrès hal-03495840v1

Evidences for different abilities of human gut bacteria to metabolise prebiotics for the benefits of the digestive health and wellness.

Cassandre Bedu-Ferrari , Paul Biscarrat , Sarah Vati , Cyril Chaudemanche , Valérie Benoit
International Scientific Association for Probiotics and Prebiotics Annual Meeting, Jun 2021, Online conference, France
Communication dans un congrès hal-04285897v1

Impact of dietary fibers and prebiotics on the gut microbiota: consequences on the digestive health and wellness.

Cassandre Bedu-Ferrari , Sarah Vati , Cyril Chaudemanche , Valérie Benoit , Thomas Lacroix
ABIES Days, Sep 2020, Paris, France
Communication dans un congrès hal-04285875v1
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Evaluating Genome Browsers Using a Software Qualification Method Evaluation

Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Jean-François Gibrat , Helene H. Chiapello
JOBIM 2010, Sep 2010, Montpellier, France. pp.196
Communication dans un congrès hal-02751310v1
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INSYGT : a multi-genes multi-genomes browser that highlights synteny conservation in prokaryotes.

Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Mark M. Hoebeke , Jean-François Gibrat
JOBIM 2008, Jun 2008, Lille, France. 2 p
Communication dans un congrès hal-02824485v1

Abundance and diversity of Mobile Genetic Elements carrying antibiotic resistance genes and transferring by conjugation in the human commensal bacterium Streptococcus salivarius.

Sophie Payot , Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin
5th International Caparica Congress in Antibiotic Resistance (IC2AR 2022), Sep 2022, Caparica, Lisbon, Portugal
Poster de conférence hal-04232454v1

Functional characterisation of keystone intestinal bacteria to metabolize prebiotics for the benefits of the digestive health and wellness.

Cassandre Bedu-Ferrari , Paul Biscarrat , Sarah Vati , Cyril Chaudemanche , Valérie Benoit
12th International Symposium on Gut Microbiology, Oct 2021, Online conference, France
Poster de conférence hal-04285893v1
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Insyght : Analyse evolutionary conserved CDS, orthologs, syntenies, pan-genome, fusion, etc., for your bacteria of interest​

Thomas Lacroix , Valentin Loux , Jonathan Lorenzo , Bryan Brancotte , Christophe Blanchet
Annual Research in Computational Molecular Biology (RECOMB), Apr 2018, Paris, France. , 2018
Poster de conférence hal-02736501v1
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Insyght: Using symbols to visualize homologies, conserved syntenies and genomic insertions across multiple genomes

Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Mark M. Hoebeke , Jean-François Gibrat
JOBIM 2013 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France. Société Française de Bio-Informatique -SFBI, pp.231, 2013, JOBIM TOULOUSE 2013 RÉSUMÉS COURS (affiches) - Volume 2/2
Poster de conférence hal-02748920v1
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IGO, Integration from Genomes to Organisms

Sandra S. Derozier , Helene H. Chiapello , Thomas Lacroix , Cyprien Guerin Guérin , Valentin Loux
JOBIM 2013, Jul 2013, Toulouse, France. , pp.246, 2013, JOBIM TOULOUSE 2013 - RÉSUMÉS COURTS (affiches)
Poster de conférence hal-02746442v1