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Valentin Loux

10
Documents
Identifiants chercheurs

Présentation

Valentin Loux is head of the INRAE Migale bioinformatics facility, part of the MaiAGE laboratory. [The Migale bioinformatics facility](https://migale.inrae.fr) provides storage, computational resources and standard bioinformatics analyses pipelines and software for sequence analyses. Valentin Loux has an established expertise in the analysis of large scale metagenomics projects, annotation and comparison of bacterial genomes. **POSTIONS** **2015-Present :** Research Engineer in Bioinformatics, head of Migale Bioinformatics Facilty, INRAE, MaIAGE laboratory **2013-2019 :** Member of steering comitee of [France-Genomique project](https://www.france-genomique.org) in charge of bionformatics development coordination **2002-2015 :** Bioinformatics Staff Engineer , INRAE Mig laboratory **CURSUS** **2002**: Master's degree in Bioinformatics (DESS), Versailles Saint-Quentin University

Publications

"valerie-barbe"
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Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20).

Hélène Falentin , Stéphanie-Marie Deutsch , Valentin Loux , Amal Hammani , Julien Buratti
Standards in Genomic Sciences, 2016, 11, pp.6. ⟨10.1186/s40793-015-0120-z⟩
Article dans une revue hal-02640172v1
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida , Hélène Chiapello , Amal Hammani
BMC Genomics, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩
Article dans une revue hal-01142363v1
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The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese

Christophe Monnet , Valentin Loux , Jean-Francois Gibrat , Valérie Barbe , Benoit Vacherie
PLoS ONE, 2010, 5 (11), pp.e15489. ⟨10.1371/journal.pone.0015489⟩
Article dans une revue hal-01195440v1
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The complete genome of Propionibacterium freudenreichii CIRM-BIA1T, a Hardy actinobacterium with food and probiotic applications

Hélène Falentin , Stéphanie-Marie Deutsch , Gwénaël Jan , Valentin Loux , Anne Thierry
PLoS ONE, 2010, 5 (7), pp.1-12. ⟨10.1371/journal.pone.0011748⟩
Article dans une revue hal-01204238v1
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The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution

Maarten van de Guchte , Stéphanie Penaud , Christine Grimaldi , Valérie Barbe , K. Bryson
Proceedings of the National Academy of Sciences of the United States of America, 2006, 103 (24), pp.9274-9279. ⟨10.1073/pnas.0603024103⟩
Article dans une revue hal-02668654v1

MetaPDOcheese : investigation of the drivers of microbial communities from French PDO milks and cheeses

Francoise Irlinger , Mahendra Mariadassou , Eric Dugat-Bony , Cécile Neuvéglise , Olivier Rué
FORUM ON FERMENTED FOODS, COST PIMENTO, May 2023, Lyon, France
Communication dans un congrès hal-04221356v1

Genomic diversity of 24 Propionibacterium freudenreichii 1 strains

Hélène Falentin , Valentin Loux , Valérie Barbe , Amal Plaudet Hammani , Stéphanie-Marie Deutsch
6 Conference on Functional Genomics of Gram-positive Microorganisms 16 International Conference on Bacilli, Jun 2011, Montecatini, Italy
Communication dans un congrès hal-01454328v1

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida da Silva , Helene Chiapello , Amal Hammami
JOBIM 16. Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015, ⟨10.1186/s12864-015-1467-7⟩
Poster de conférence hal-01209851v1

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida da Silva , Hélène Chiapello , Amal Hammami
20. Colloque du Club des Bactéries Lactiques, Jun 2015, Lille, France. , 2015
Poster de conférence hal-01170054v1

The complete genome of Propionibacterium freudenreichii CIRM 1 a hardy actinobacteria with food and probiotic applications

Hélène Falentin , Stéphanie-Marie Deutsch , Sandrine Parayre-Breton , Julien Dherbecourt , Gwénaël Jan
3 International Symposium on Propionibacteria and Bifidobacteria: Dairy and Probiotic, Jun 2010, Oviédo, Spain. , International Journal of Food Microbiology, Volume 149, Issue 1, Pages 1-112 (1 September 2011), 2010, International Journal of Food Microbiology
Poster de conférence hal-01454344v1