Vincent Mallet

9
Documents

Publications

Publications

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Finding antibodies in cryo-EM maps with CrAI

Vincent Mallet , Chiara Rapisarda , Hervé Minoux , Maks Ovsjanikov
Bioinformatics, 2025, 41 (5), pp.btaf157. ⟨10.1093/bioinformatics/btaf157⟩
Article dans une revue hal-05418831 v1
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InDeepNet: a web platform for predicting functional binding sites in proteins using InDeep

Fabien Mareuil , Rachel Torchet , Luis Checa Ruano , Vincent Mallet , Michael Nilges et al.
Nucleic Acids Research, 2025, pp.gkaf403. ⟨10.1093/nar/gkaf403⟩
Article dans une revue pasteur-05117181 v1
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AlignScape, displaying sequence similarity using self-organizing maps

Isaac Filella-Merce , Vincent Mallet , Eric Durand , Michaël Nilges , Guillaume Bouvier et al.
Frontiers in Bioinformatics, 2024, 4, pp.1321508. ⟨10.3389/fbinf.2024.1321508⟩
Article dans une revue hal-04780460 v1
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quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories

Vincent Mallet , Michael Nilges , Guillaume Bouvier
Bioinformatics, 2021, 37 (14), pp.2064-2065. ⟨10.1093/bioinformatics/btaa925⟩
Article dans une revue hal-03122153 v1
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InDeep: 3D fully convolutional neural networks to assist <i>in silico</i> drug design on protein–protein interactions

Vincent Mallet , Luis Checa Ruano , Alexandra Moine Franel , Michael Nilges , Karen Druart et al.
Bioinformatics, 2021, 38 (5), pp.1261 - 1268. ⟨10.1093/bioinformatics/btab849⟩
Article dans une revue pasteur-04102799 v1

OptiMol : Optimization of Binding Affinities in Chemical Space for Drug Discovery

Jacques Boitreaud , Vincent Mallet , Carlos Oliver , Jérôme Waldispühl
Journal of Chemical Information and Modeling, 2020, 60 (12), pp.5658-5666. ⟨10.1021/acs.jcim.0c00833⟩
Article dans une revue hal-03122149 v1
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Augmented base pairing networks encode RNA-small molecule binding preferences

Carlos Oliver , Vincent Mallet , Roman Sarrazin Gendron , Vladimir Reinharz , William l Hamilton et al.
Nucleic Acids Research, 2020, 48 (14), pp.7690-7699. ⟨10.1093/nar/gkaa583⟩
Article dans une revue hal-03122151 v1
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Geometric deep learning for structural bioinformatics

Vincent Mallet
Bioinformatics [q-bio.QM]. Université Paris Cité, 2022. English. ⟨NNT : 2022UNIP7006⟩
Thèse tel-03943950 v1