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Multilayer Network Analysis Reveals Connectivity Synergies Between Protected Area Levels Across Various Taxonomic Groups
Marie‐caroline Prima
,
Lucia Oliveira-Cruz
,
Vincent Miele
,
Sara Si-Moussi
,
Paul Rouveyrol
et al.
Article dans une revue
hal-05308071v1
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Zero‐shot animal behaviour classification with vision‐language foundation models
Gaspard Dussert
,
Vincent Miele
,
Colin van Reeth
,
Anne Delestrade
,
Stéphane Dray
et al.
Article dans une revue
hal-05093147v1
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ORCHAMP: an observation network formonitoring biodiversity and ecosystem functioning across space and time inmountainous regions
Wilfried Thuiller
,
Amélie Saillard
,
Sylvain Abdulhak
,
Vincent Augé
,
Carole Birck
et al.
Article dans une revue
hal-04793697v1
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Being confident in confidence scores: calibration in deep learning models for camera trap image sequences
Gaspard Dussert
,
Simon Chamaillé-Jammes
,
Stéphane Dray
,
Vincent Miele
Article dans une revue
hal-04749328v1
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The DeepFaune initiative: a collaborative effort towards the automatic identification of European fauna in camera trap images
Noa Rigoudy
,
Gaspard Dussert
,
Abdelbaki Benyoub
,
Aurélien Besnard
,
Carole Birck
et al.
Article dans une revue
hal-04278674v2
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Quantifying the overall effect of biotic interactions on species distributions along environmental gradients
Marc Ohlmann
,
Catherine Matias
,
Giovanni Poggiato
,
Stéphane Dray
,
Wilfried Thuiller
et al.
Article dans une revue
hal-03172480v4
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An appraisal of graph embeddings for comparing trophic network architectures
Christophe Botella
,
Stéphane Dray
,
Catherine Matias
,
Vincent Miele
,
Wilfried Thuiller
Article dans une revue
hal-03191630v2
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Revisiting animal photo-identification using deep metric learning and network analysis
Vincent Miele
,
Gaspard Dussert
,
Bruno Spataro
,
Simon Chamaillé-Jammes
,
Dominique Allainé
et al.
Article dans une revue
hal-03425925v1
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Images, écologie et deep learning
Vincent Miele
,
Stéphane Dray
,
Olivier Gimenez
Regards sur la biodiversité, 2021
Article dans une revue
hal-03142486v1
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Core–periphery dynamics in a plant–pollinator network
Vincent Miele
,
Rodrigo Ramos-Jiliberto
,
Diego Vázquez
Article dans une revue
hal-03418817v1
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Non-trophic interactions strengthen the diversity-functioning relationship in an ecological bioenergetic network model
Vincent Miele
,
Christian Guill
,
Rodrigo Ramos-Jiliberto
,
Sonia Kéfi
Article dans une revue
hal-02331446v1
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Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot
Daphné Reiss
,
Gladys Mialdea
,
Vincent Miele
,
Damien M. de Vienne
,
Jean Peccoud
et al.
Article dans une revue
hal-02140494v1
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The diversity of interaction types drives the functioning of ecological communities
Vincent Miele
,
Christian Guill
,
Rodrigo Ramos-Jiliberto
,
Sonia Kéfi
Article dans une revue
hal-03009740v1
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Diversity indices for ecological networks: a unifying framework using Hill numbers
Marc Ohlmann
,
Vincent Miele
,
Stéphane Dray
,
Loic Chalmandrier
,
Louise O’connor
et al.
Article dans une revue
hal-02078993v1
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Nine Quick Tips for Analyzing Network Data
Vincent Miele
,
Stephane S. Robin
,
Catherine Matias
,
Stéphane Dray
Article dans une revue
hal-02089501v2
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Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads
Leandro Lima
,
Blerina Sinaimeri
,
Gustavo Sacomoto
,
Helene Lopez-Maestre
,
Camille Marchet
et al.
Article dans une revue
hal-01474524v1
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Ecological networks to unravel the routes to horizontal transposon transfers
Samuel Venner
,
Vincent Miele
,
Christophe Terzian
,
Christian Biemont
,
Vincent Daubin
et al.
Article dans une revue
hal-01608245v1
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Statistical clustering of temporal networks through a dynamic stochastic block model
Catherine Matias
,
Vincent Miele
Journal of the Royal Statistical Society: Series B, 2017, 79 (4), pp.1119-1141. ⟨10.1111/rssb.12200⟩
Article dans une revue
hal-01167837v2
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Revealing the hidden structure of dynamic ecological networks
Vincent Miele
,
Catherine Matias
Article dans une revue
hal-01426652v1
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Fruiting Strategies of Perennial Plants: A Resource Budget Model to Couple Mast Seeding to Pollination Efficiency and Resource Allocation Strategies
Samuel Venner
,
A. Siberchicot
,
P.F. Pélisson
,
E. Schermer
,
Marie-Claude Bel-Venner
et al.
Article dans une revue
hal-02049895v1
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How Structured Is the Entangled Bank? The Surprisingly Simple Organization of Multiplex Ecological Networks Leads to Increased Persistence and Resilience
Sonia Kéfi
,
Vincent Miele
,
Evie Wieters
,
Sergio Navarrete
,
Eric Berlow
Article dans une revue
hal-01938697v1
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Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Yvan Le Bras
,
Olivier Collin
,
Cyril Monjeaud
,
Vincent Lacroix
,
Eric Rivals
et al.
Article dans une revue
hal-01280238v1
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DNA Physical Properties and Nucleosome Positions Are Major Determinants of HIV-1 Integrase Selectivity
Monica Naughtin
,
Zofia Haftek-Terreau
,
Johan Xavier
,
Sam Meyer
,
Maud Silvain
et al.
Article dans une revue
pasteur-01416841v1
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Fast and Parallel Algorithm for Population-Based Segmentation of Copy-Number Profiles
Guillem Rigaill
,
Vincent Miele
,
Franck Picard
Lecture Notes in Computer Science, 2014, 8452, pp.248-258
Article dans une revue
hal-02045097v1
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Spatially constrained clustering of ecological networks
Vincent Miele
,
Franck Picard
,
S. Dray
Article dans une revue
hal-02045124v1
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High-quality sequence clustering guided by network topology and multiple alignment likelihood.
Vincent Miele
,
Simon Penel
,
Vincent Daubin
,
Franck Picard
,
Daniel Kahn
et al.
Article dans une revue
hal-00965711v1
|
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Toward community standards in the quest for orthologs
Christophe Dessimoz
,
Toni Gabaldon
,
David Roos
,
Erik L L Sonnhammer
,
Javier Herrero
et al.
Article dans une revue
hal-01636872v1
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Ultra-fast sequence clustering from similarity networks with SiLiX
V. Miele
,
Simon Penel
,
L. Duret
Article dans une revue
hal-00698365v1
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Strategies for online inference of model-based clustering in large and growing networks
H. Zanghi
,
Franck Picard
,
V. Miele
,
C. Ambroise
Article dans une revue
hal-00539318v1
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Deciphering the connectivity structure of biological networks using MixNet
Franck Picard
,
Vincent Miele
,
Jean-Jacques J.-J. Daudin
,
Ludovic Cottret
,
Stephane S. Robin
Article dans une revue
hal-02658961v1
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Deciphering the connectivity structure of biological networks using MixNet
Franck Picard
,
V. Miele
,
L. Cottret
,
J.J. Daudin
,
S. Robin
BMC Bioinformatics, 2009, in press, pp.1-1
Article dans une revue
hal-00391483v1
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Deciphering the connectivity structure of biological networks using MixNet
Franck Picard
,
V. Miele
,
J.J. Daudin
,
L. Cottret
,
S. Robin
BMC Bioinformatics, 2009, 10, pp.1-11
Article dans une revue
hal-00428390v1
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DNA physical properties determine nucleosome occupancy from yeast to fly.
Vincent Miele
,
Cédric Vaillant
,
Yves d'Aubenton-Carafa
,
Claude Thermes
,
Thierry Grange
Article dans une revue
hal-00319296v1
|
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Fast online graph clustering via Erdos–Rényimixture
H. Zanghi
,
C. Ambroise
,
V. Miele
Pattern Recognition, 2008, 41, pp.3592-3599
Article dans une revue
hal-00428182v1
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DNA physical properties determine nucleosome occupancy from yeast to fly
V. Miele
,
C. Vaillant
,
Y. d'Aubenton-Carafa
,
C. Thermes
,
T. Grange
Nucleic Acids Research, 2008, 36, pp.3746-3756
Article dans une revue
hal-00428131v1
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Taking into account missing genotypes and errors in Family Based Association Testing using an Expectation-Maximization framework
V. Miele
,
Y. Slaoui
,
A. Rebai
incollection, 2008, --, pp.508-514
Article dans une revue
hal-00428088v1
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|
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DNA sequence drives nucleosome occupancy of yeast promoters
V. Miele
,
C. Vaillant
,
Y. d'Aubenton
,
David Robelin
,
B. Prum
et al.
incollection, 2006, --, pp.2783-2784
Article dans une revue
hal-00427880v1
|
|
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A reversible jump Markov chain Monte Carlo algorithm for bacterial promoter motifs discovery
P. Nicolas
,
A.-S. Tocquet
,
V. Miele
,
F. Muri
Journal of Computational Biology, 2006, 13, pp.651-667
Article dans une revue
hal-00428049v1
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|
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A reversible jump Markov chain Monte Carlo algorithm for bacterial promoter motifs discovery
Pierre P. Nicolas
,
Anne-Sophie Tocquet
,
Vincent Miele
,
Florence Muri
Journal of Computational Biology, 2006, 13 (3), pp.651-667
Article dans une revue
hal-02654141v1
|
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Uncovering structure in biological networks
J.J. Daudin
,
Vincent Lacroix
,
M. Mariadassou
,
V. Miele
,
Franck Picard
et al.
incollection, 2006, --, pp.471-483
Article dans une revue
hal-00427936v1
|
|
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seq++: a package for biological sequences analysis with a range of Markov-related models
V. Miele
,
P.Y. Bourguignon
,
David Robelin
,
Gregory Nuel
,
H. Richard
Bioinformatics, 2005, 21, pp.2783-2784
Article dans une revue
hal-00427832v1
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