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Vincent Lefort

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FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards

Alban Gaignard , Thomas Rosnet , Frédéric de Lamotte , Vincent Lefort , Marie-Dominique Devignes
Journal of Biomedical Semantics, 2023, 14 (1), pp.7. ⟨10.1186/s13326-023-00289-5⟩
Journal articles hal-04148181v1
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Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions

Valentin Guignon , Catherine Breton , Jérôme J. Mariette , Francois Sabot , Julien Fumey
PLoS Computational Biology, 2021, 17 (10), pp.e1009321. ⟨10.1371/journal.pcbi.1009321⟩
Journal articles lirmm-03385026v1
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Accounting for ambiguity in ancestral sequence reconstruction

Adrien Oliva , Sylvain Pulicani , Vincent Lefort , Laurent Brehelin , Olivier Gascuel
Bioinformatics, 2019, 35 (21), pp.4290-4297. ⟨10.1093/bioinformatics/btz249⟩
Journal articles pasteur-02404399v1
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WAVES: a web application for versatile enhanced bioinformatic services

Marc Chakiachvili , Sylvain Milanesi , Anne-Muriel Arigon Chifolleau , Vincent Lefort
Bioinformatics, 2019, 35 (11), pp.140-142. ⟨10.1093/bioinformatics/bty639⟩
Journal articles lirmm-01888794v1
Image document new generation phylogenetic services for non-specialists

Frédéric Lemoine , Damien Correia , Vincent Lefort , Olivia Doppelt-Azeroual , Fabien Mareuil
Nucleic Acids Research, 2019, 47 (W1), pp.W260-W265. ⟨10.1093/nar/gkz303⟩
Journal articles hal-02341225v1
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SMS: Smart Model Selection in PhyML

Vincent Lefort , Jean-Emmanuel Longueville , Olivier Gascuel
Molecular Biology and Evolution, 2017, 34 (9), pp.2422-2424. ⟨10.1093/molbev/msx149⟩
Journal articles lirmm-01794206v1
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TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction

Jia-Ming Chang , Paolo Di tommaso , Vincent Lefort , Olivier Gascuel , Cedric Notredame
Nucleic Acids Research, 2015, 43 (W1), pp.W3-W6. ⟨10.1093/nar/gkv310⟩
Journal articles lirmm-01283940v1
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FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program

Vincent Lefort , Richard Desper , Olivier Gascuel
Molecular Biology and Evolution, 2015, 32 (10), pp.2798-2800. ⟨10.1093/molbev/msv150⟩
Journal articles lirmm-01283927v1
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CompPhy: a web-based collaborative platform for comparing phylogenies

Nicolas Fiorini , Vincent Lefort , François Chevenet , Vincent Berry , Anne-Muriel Arigon Chifolleau
BMC Evolutionary Biology, 2014, 14 (1), pp.253-255. ⟨10.1186/s12862-014-0253-5⟩
Journal articles lirmm-01140756v1
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Computational discovery of regulatory elements in a continuous expression space

Mathieu Lajoie , Olivier Gascuel , Vincent Lefort , Laurent Brehelin
Genome Biology, 2012, 13 (11), pp.41. ⟨10.1186/gb-2012-13-11-r109⟩
Journal articles lirmm-00796453v1
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ReplacementMatrix: a Web Server for Maximum Likelihood Estimation of Amino Acid Replacement Rate Matrices

Cao Cuong Dang , Vincent Lefort , Vinh S. Le , Quang Le Si , Olivier Gascuel
Bioinformatics, 2011, 27 (19), pp.2758-2760. ⟨10.1093/bioinformatics/btr435⟩
Journal articles lirmm-00646393v1
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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

Stéphane Guindon , Jean-François Dufayard , Vincent Lefort , Maria Anisimova , Wim Hordijk
Systematic Biology, 2010, 59 (3), pp.307-321. ⟨10.1093/sysbio/syq010⟩
Journal articles lirmm-00511784v2
Image document robust phylogenetic analysis for the non-specialist

Alexis Dereeper , Valentin Guignon , Guillaume Blanc , Stéphane Audic , Sylvain Buffet
Nucleic Acids Research, 2008, 36 (Web Server), pp.W465-W469. ⟨10.1093/nar/gkn180⟩
Journal articles lirmm-00324099v1
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PhySIC IST : cleaning source trees to infer more informative supertrees

Celine Scornavacca , Vincent Berry , Vincent Lefort , Emmanuel J.P. Douzery , Vincent Ranwez
BMC Bioinformatics, 2008, 9 (413), pp.1471-2105. ⟨10.1186/1471-2105-9-413⟩
Journal articles lirmm-00324069v1
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Genomics, biogeography, and the diversification of placental mammals

Derek E. Wildman , Monica Uddin , Juan C. Opazo , Guozhen Liu , Vincent Lefort
Proceedings of the National Academy of Sciences of the United States of America, 2007, 104 (36), pp.14395-14400. ⟨10.1073/pnas.0704342104⟩
Journal articles lirmm-00193171v1

GPS@ bioinformatics portal: from network to EGEE grid

Christophe Blanchet , Vincent Lefort , Christophe Combet , Gilbert Deléage
Studies in Health Technology and Informatics, 2006, 120 (1), pp.187-193
Journal articles hal-00313733v1

Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts

Judith Hirsch , Vincent Lefort , Marion Vankersschaver , Adnane Boualem , Antoine Lucas
Plant Physiology, 2006, 140 (4), pp.1192-1204. ⟨10.1104/pp.105.073817⟩
Journal articles hal-00118293v1