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Yann Guiguen

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INRAE Research Director (DR1)


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Massive expansion of sex-specific SNPs, transposon-related elements, and neocentromere formation shape the young W-chromosome from the mosquitofish Gambusia affinis

Stefan Müller , Kang Du , Yann Guiguen , Maria Pichler , Shinichi Nakagawa
BMC Biology, 2023, 21, pp.109. ⟨10.1186/s12915-023-01607-0⟩
Journal articles hal-04150914v1

Characterization of the sex determining region of channel catfish (Ictalurus punctatus) and development of a sex-genotyping test

Ming Wen , Qiaowei Pan , Wes Larson , Camille Eché , Yann Guiguen
Gene, 2023, 850, pp.146933. ⟨10.1016/j.gene.2022.146933⟩
Journal articles hal-03886876v1
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques
Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩
Journal articles hal-03765882v1

A nonfunctional copy of the salmonid sex-determining gene ( sdY ) is responsible for the “apparent” XY females in Chinook salmon, Oncorhynchus tshawytscha

Sylvain Bertho , Amaury Herpin , Elodie Jouanno , Ayaka Yano , Julien Bobe
G3, 2022, 12 (2), pp.jkab451. ⟨10.1093/g3journal/jkab451⟩
Journal articles hal-03554338v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm
Molecular Ecology Resources, 2022, pp.1-18. ⟨10.1111/1755-0998.13620⟩
Journal articles hal-03652234v1

Inactivation of the Anti-Müllerian Hormone Receptor Type 2 (amhrII) Gene in Northern Pike (Esox lucius) Results in Male-To-Female Sex Reversal

Qiaowei Pan , Amaury Herpin , Yann Guiguen
Sexual Development, 2022, pp.1-6. ⟨10.1159/000521003⟩
Journal articles hal-03629322v1
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An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication

Elise Parey , Alexandra Louis , Jérôme Montfort , Yann Guiguen , Hugues Roest Crollius
Genome Research, 2022, 32 (9), pp.1685 - 1697. ⟨10.1101/gr.276953.122⟩
Journal articles hal-03876769v1
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Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region

Andrew J. Jasonowicz , Anna Simeon , Margot Zahm , Cédric Cabau , Christophe C. Klopp
Molecular Ecology Resources, 2022, pp.1-16. ⟨10.1111/1755-0998.13641⟩
Journal articles hal-03737450v1

Genome biology of the darkedged splitfin, Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation

Kang Du , Martin Pippel , Susanne Kneitz , Romain Feron , Irene da Cruz
Genome Research, 2022, 32 (3), pp.583-594. ⟨10.1101/gr.275826.121⟩
Journal articles hal-03629328v1

Development of a polymerase chain reaction (PCR)-based genetic sex identification method in the chub mackerel Scomber japonicus and blue mackerel S. australasicus

Reoto Tani , Wataru Kawamura , Tetsuro Morita , Christophe C. Klopp , Marine Milhes
Fisheries Science, 2021, 87 (6), pp.785-793. ⟨10.1007/s12562-021-01548-z⟩
Journal articles hal-03338956v1

Allelic diversification after transposable element exaptation promoted Gsdf as the master sex determining gene of sablefish

Amaury Herpin , Manfred Schartl , Alexandra Depince , Yann Guiguen , Julien Bobe
Genome Research, 2021, ⟨10.1101/gr.274266.120⟩
Journal articles hal-03289901v1
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A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas)

Mateus Adolfi , Kang Du , Susanne Kneitz , Cédric Cabau , Margot Zahm
Scientific Reports, 2021, 11 (1), pp.21544. ⟨10.1038/s41598-021-01066-z⟩
Journal articles hal-03521507v1

RADSex: a computational workflow to study sex determination using Restriction Site‐Associated DNA Sequencing data

Romain Feron , Qiaowei Pan , Ming Wen , Boudjema Imarazene , Elodie Jouanno
Molecular Ecology Resources, 2021, 21 (5), pp.1715-1731. ⟨10.1111/1755-0998.13360⟩
Journal articles hal-03150035v1

Primordial germ cell migration and histological and molecular characterization of gonadal differentiation in Pachón Cavefish Astyanax mexicanus

Boudjema Imarazene , Séverine Beille , Elodie Jouanno , Adèle Branthonne , Violette Thermes
Sexual Development, 2021, pp.1-18. ⟨10.1159/000513378⟩
Journal articles hal-03166084v1
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Evolution of sex hormone binding globulins reveals early gene duplication at the root of vertebrates

Yann Guiguen , Jérémy Pasquier , Alexis Fostier , Julien Bobe
General and Comparative Endocrinology, 2021, 300, pp.1-8. ⟨10.1016/j.ygcen.2020.113646⟩
Journal articles hal-02987822v1
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The bowfin genome illuminates the developmental evolution of ray-finned fishes

Andrew W Thompson , M Brent Hawkins , Elise Parey , Dustin J Wcisel , Tatsuya Ota
Nature Genetics, 2021, 53, pp.1373 - 1384. ⟨10.1038/s41588-021-00914-y⟩
Journal articles hal-03457561v1
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A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus

Boudjema Imarazene , Kang Du , Séverine Beille , Elodie Jouanno , Romain Feron
Current Biology - CB, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩
Journal articles hal-03337251v1
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The rise and fall of the ancient northern pike master sex-determining gene

Qiaowei Pan , Romain Feron , Elodie Jouanno , Hugo Darras , Amaury Herpin
eLife, 2021, 10, pp.e62858. ⟨10.7554/eLife.62858⟩
Journal articles hal-03139073v2

A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes

Heiner Kuhl , Yann Guiguen , Christin Höhne , Eva Kreuz , Kang Du
Philosophical Transactions of the Royal Society B: Biological Sciences, 2021, 376 (1832), pp.20200089. ⟨10.1098/rstb.2020.0089⟩
Journal articles hal-03329961v1

A Y-linked anti-Müllerian hormone type-II receptor is the sex-determining gene in ayu, Plecoglossus altivelis

Masatoshi Nakamoto , Tsubasa Uchino , Eriko Koshimizu , Yudai Kuchiishi , Ryota Sekiguchi
PLoS Genetics, 2021, 17 (8), pp.e1009705. ⟨10.1371/journal.pgen.1009705⟩
Journal articles hal-03329953v1
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A brief review of vertebrate sex evolution with a pledge for integrative research: towards ‘ sexomics ’

Matthias Stöck , Lukáš Kratochvíl , Heiner Kuhl , Michail Rovatsos , Ben Evans
Philosophical Transactions of the Royal Society B: Biological Sciences, 2021, 376 (1832), pp.20200426. ⟨10.1098/rstb.2020.0426⟩
Journal articles hal-03329947v1

Evolution of master sex determiners: TGF-β signalling pathways at regulatory crossroads

Qiaowei Pan , Tomas Kay , Alexandra Depincé , Mateus Adolfi , Manfred Schartl
Philosophical Transactions of the Royal Society B: Biological Sciences, 2021, 376 (1832), pp.20200091. ⟨10.1098/rstb.2020.0091⟩
Journal articles hal-03289911v1

Lessons from an unusual vertebrate sex-determining gene

Sylvain Bertho , Amaury Herpin , Manfred Schartl , Yann Guiguen
Philosophical Transactions of the Royal Society B: Biological Sciences, 2021, 376 (1832), pp.20200092. ⟨10.1098/rstb.2020.0092⟩
Journal articles hal-03289913v1

The bowfin genome illuminates the developmental evolution of ray-finned fishes

Andrew Thompson , M. Brent Hawkins , Elise Parey , Dustin Wcisel , Tatsuya Ota
Nature Genetics, 2021, ⟨10.1038/s41588-021-00914-y⟩
Journal articles hal-03329977v1

Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques
Molecular Ecology Resources, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩
Journal articles hal-02623895v1