Zehra Esra Ilhan

58%

Open access

Documents

Current affiliations

1002254
1136083

Researcher identifiers

zehra-esra-ilhan
0000-0002-3387-9424

Contact

Research domains

Life Sciences [q-bio]

Skills

sequencing metabolomics bioinformatics statistics anaerobic cultivation high-throughput screening isolation molecular extraction

Publications

	Long-Term Continuous Test of H 2 -Induced Denitrification Catalyzed by Palladium Nanoparticles in a Biofilm Matrix Jie Cheng , Min Long , Chen Zhou , Zehra-Esra Ilhan , Diana Calvo Environmental Science and Technology, 2023, 57 (32), pp 11948-11957. ⟨10.1021/acs.est.3c01268⟩ Journal articles hal-04334062v1
	Occurrence of Neonatal Necrotizing Enterocolitis in Premature Neonates and Gut Microbiota: A Case–Control Prospective Multicenter Study Julio Aires , Zehra Esra Ilhan , Lancelot Nicolas , Laurent Ferraris , Johanne Delannoy Microorganisms, 2023, 11 (10), pp 2457. ⟨10.3390/microorganisms11102457⟩ Journal articles hal-04241268v1
	Identifying biodegradation pathways of cetrimonium bromide (CTAB) using metagenome, metatranscriptome, and metabolome tri-omics integration Chen-Wei Zheng , Yi-Hao Luo , Yen-Jung Sean Lai , Zehra Esra Ilhan , Aura Ontiveros-Valencia Water Research, 2023, 246, pp.120738. ⟨10.1016/j.watres.2023.120738⟩ Journal articles hal-04297122v1
	Organic carbon metabolism is a main determinant of hydrogen demand and dynamics in anaerobic soils Megan Meinel , Anca Delgado , Zehra Esra Ilhan , Marisol Luna Aguero , Samuel Aguiar Chemosphere, 2022, 303 (1), pp.134877. ⟨10.1016/j.chemosphere.2022.134877⟩ Journal articles hal-04297109v1
	Exposure to anti-seizure medications impact growth of gut bacterial species and subsequent host response Zehra Esra Ilhan , Vincent Brochard , Nicolas Lapaque , Stéphane Auvin , Patricia Lepage Neurobiology of Disease, 2022, 167, pp.105664. ⟨10.1016/j.nbd.2022.105664⟩ Journal articles hal-03954506v1
	Surgical Menopause and Estrogen Therapy Modulate the Gut Microbiota, Obesity Markers, and Spatial Memory in Rats Lydia Zeibich , Stephanie V Koebele , Victoria E Bernaud , Zehra Esra Ilhan , Blake Dirks Frontiers in Cellular and Infection Microbiology, 2021, 11, ⟨10.3389/fcimb.2021.702628⟩ Journal articles hal-04334077v1
	Increased expression of antibiotic-resistance genes in biofilm communities upon exposure to cetyltrimethylammonium bromide (CTAB) and other stress conditions Yi-Hao Luo , Yenjung Sean Lai , Chenwei Zheng , Zehra Esra Ilhan , Aura Ontiveros-Valencia Science of the Total Environment, 2021, 765, pp.144264. ⟨10.1016/j.scitotenv.2020.144264⟩ Journal articles hal-04334080v1
	MicroNiche: an R package for assessing microbial niche breadth and overlap from amplicon sequencing data D R Finn , J Yu , Z E Ilhan , V M C Fernandes , C R Penton FEMS Microbiology Ecology, 2020, 96 (8), ⟨10.1093/femsec/fiaa131⟩ Journal articles hal-04335754v1
	Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery Zehra Esra Ilhan , John K Dibaise , Sydney E Dautel , Nancy G Isern , Young-Mo Kim npj Biofilms and Microbiomes, 2020, 6 (1), pp.12. ⟨10.1038/s41522-020-0122-5⟩ Journal articles hal-04335789v1
	The microbiome and gynaecological cancer development, prevention and therapy Paweł Łaniewski , Zehra Esra Ilhan , Melissa Herbst-Kralovetz Nature Reviews Urology, 2020, 17 (4), pp.232-250. ⟨10.1038/s41585-020-0286-z⟩ Journal articles hal-04335776v1
	Integrative and quantitative bioenergetics: Design of a study to assess the impact of the gut microbiome on host energy balance Karen Corbin , Rosa Krajmalnik-Brown , Elvis Carnero , Christopher Bock , Rita Emerson Contemporary Clinical Trials Communications, 2020, 19, pp.100646. ⟨10.1016/j.conctc.2020.100646⟩ Journal articles hal-03351349v1
	Deciphering the complex interplay between microbiota, HPV, inflammation and cancer through cervicovaginal metabolic profiling Zehra Esra Ilhan , Paweł Łaniewski , Natalie Thomas , Denise J Roe , Dana M Chase EBioMedicine, 2019, 44, pp.675-690. ⟨10.1016/j.ebiom.2019.04.028⟩ Journal articles hal-04335797v1
	Complete dechlorination and mineralization of pentachlorophenol (PCP) in a hydrogen-based membrane biofilm reactor (MBfR) Min Long , Zehra Esra Ilhan , Siqing Xia , Chen Zhou , Bruce Rittmann Water Research, 2018, 144, pp.134-144. ⟨10.1016/j.watres.2018.06.071⟩ Journal articles hal-04335738v1
	Differences in fecal microbial metabolites and microbiota of children with autism spectrum disorders Dae-Wook Kang , Zehra Esra Ilhan , Nancy Isern , David Hoyt , Daniel Howsmon Anaerobe, 2018, 49, pp.121-131. ⟨10.1016/j.anaerobe.2017.12.007⟩ Journal articles hal-04335814v1
	Microbiota–drug interactions: Impact on metabolism and efficacy of therapeutics Ellen Wilkinson , Zehra Esra Ilhan , Melissa Herbst-Kralovetz Maturitas, 2018, 112, pp.53-63. ⟨10.1016/j.maturitas.2018.03.012⟩ Journal articles hal-04335800v1
	pH-Mediated Microbial and Metabolic Interactions in Fecal Enrichment Cultures Zehra Esra Ilhan , Andrew K Marcus , Dae-Wook Kang , Bruce E Rittmann , Rosa Krajmalnik-Brown MSphere, 2017, 2 (3), ⟨10.1128/mSphere⟩ Journal articles hal-04335936v1
	Insights into Butyrate Production in a Controlled Fermentation System via Gene Predictions S. Esquivel-Elizondo , Z E Ilhan , E I Garcia-Peña , R. Krajmalnik-Brown mSystems, 2017, 2 (4), ⟨10.1128/mSystems.00051-17.⟩ Journal articles hal-04335916v1
	Enhancing biodegradation of C16-alkyl quaternary ammonium compounds using an oxygen-based membrane biofilm reactor Yenjung Sean Lai , Aura Ontiveros-Valencia , Zehra Esra Ilhan , Yun Zhou , Evelyn Miranda Water Research, 2017, 123, pp.825-833. ⟨10.1016/j.watres.2017.07.003⟩ Journal articles hal-04335851v1
	Total electron acceptor loading and composition affect hexavalent uranium reduction and microbial community structure in a membrane biofilm reactor Aura Ontiveros-Valencia , Chen Zhou , Zehra Esra Ilhan , Louis Cornette de Saint Cyr , Rosa Krajmalnik-Brown Water Research, 2017, 125, pp.341-349. ⟨10.1016/j.watres.2017.08.060⟩ Journal articles hal-04335843v1
	Distinctive microbiomes and metabolites linked with weight loss after gastric bypass, but not gastric banding Zehra Esra Ilhan , John Dibaise , Nancy Isern , David Hoyt , Andrew Marcus The International Society of Microbiologial Ecology Journal, 2017, 11 (9), pp.2047-2058. ⟨10.1038/ismej.2017.71⟩ Journal articles hal-04678889v1
	Insights into Butyrate Production in a Controlled Fermentation System via Gene Predictions S. Esquivel-Elizondo , Z. E. Ilhan , E. Garcia-Peña , R. Krajmalnik-Brown mSystems, 2017, 2 (4), ⟨10.1128/msystems.00051-17⟩ Journal articles hal-04678867v1
	Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease Timothy Sampson , Justine Debelius , Taren Thron , Stefan Janssen , Gauri Shastri Cell, 2016, 167 (6), pp.1469-1480.e12. ⟨10.1016/j.cell.2016.11.018⟩ Journal articles hal-04678869v1
	Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone Dae-Wook Kang , John Dibaise , Zehra Esra Ilhan , Michael Crowell , Jai Ram Rideout Anaerobe, 2015, 33, pp.33-41. ⟨10.1016/j.anaerobe.2015.01.005⟩ Journal articles hal-04678863v1
	The source of inoculum plays a defining role in the development of MEC microbial consortia fed with acetic and propionic acid mixtures Vianey Ruiz , Zehra Esra Ilhan , Dae-Wook Kang , Rosa Krajmalnik-Brown , Germán Buitrón Journal of Biotechnology, 2014, 182-183, pp.11-18. ⟨10.1016/j.jbiotec.2014.04.016⟩ Journal articles hal-04336424v1
	Using a Two-Stage Hydrogen-Based Membrane Biofilm Reactor (MBfR) to Achieve Complete Perchlorate Reduction in the Presence of Nitrate and Sulfate He-Ping Zhao , Aura Ontiveros-Valencia , Youneng Tang , Zehra Esra Ilhan , Rosa Krajmalnik-Brown Environmental Science and Technology, 2013, 47 (3), pp. 1565-1572. ⟨10.1021/es303823n⟩ Journal articles hal-04297104v1
	Reduced Incidence of Prevotella and Other Fermenters in Intestinal Microflora of Autistic Children Dae-Wook Kang , Jin Gyoon Park , Zehra Esra Ilhan , Garrick Wallstrom , Joshua Labaer PLoS ONE, 2013, 8 (7), pp.e68322. ⟨10.1371/journal.pone.0068322⟩ Journal articles hal-04297115v1
	Phylogenetic analysis of nitrate- and sulfate-reducing bacteria in a hydrogen-fed biofilm Aura Ontiveros-Valencia , Zehra Esra Ilhan , Dae-Wook Kang , Bruce Rittmann , Rosa Krajmalnik-Brown FEMS Microbiology Ecology, 2013, 85 (1), pp. 158-167. ⟨10.1111/1574-6941.12107⟩ Journal articles hal-04297107v1
	Effects of Multiple Electron Acceptors on Microbial Interactions in a Hydrogen-Based Biofilm He-Ping Zhao , Zehra Esra Ilhan , Aura Ontiveros-Valencia , Youneng Tang , Bruce Rittmann Environmental Science and Technology, 2013, 47 (13), pp. 7396-7403. ⟨10.1021/es401310j⟩ Journal articles hal-04297110v1
	Effects of Gut Microbes on Nutrient Absorption and Energy Regulation Rosa Krajmalnik-Brown , Zehra‐esra Ilhan , Dae‐wook Kang , John Dibaise Nutrition in Clinical Practice, 2012, 27 (2), pp.201-214. ⟨10.1177/0884533611436116⟩ Journal articles hal-04336415v1
	Herbicide and Antibiotic Removal by Woodchip Denitrification Filters: Sorption Processes Z. Esra Ilhan , Say Kee Ong , Thomas Moorman Water, Air, and Soil Pollution, 2011, 223 (5), pp. 2651-2662. ⟨10.1007/s11270-011-1057-5⟩ Journal articles hal-04297099v1
	Dissipation of Atrazine, Enrofloxacin, and Sulfamethazine in Wood Chip Bioreactors and Impact on Denitrification Z. Ilhan , S. Ong , T. Moorman Journal of Environmental Quality, 2011, 40 (6), pp.1816-1823. ⟨10.2134/jeq2011.0082⟩ Journal articles hal-04336410v1
	Herbicide and Antibiotic Removal by Woodchip Denitrification Filters: Sorption Processes Z. Esra Ilhan , Say Kee Ong , Thomas Moorman Water, Air, and Soil Pollution, 2011, 223 (5), pp.2651-2662. ⟨10.1007/s11270-011-1057-5⟩ Journal articles hal-04336420v1

	Chronic exposure to antiseizure drugs impacts the gut microbiome community and function Camille Dop , Stéphane Auvin , Patricia Lepage , Zehra Esra Ilhan 15TH SEEON CONFERENCE, Jun 2023, Seeon Monastery, Germany, Germany Conference papers hal-04296650v1

	Members of the gut microbiota modulate the bioavailability of the antiseizure medication lamotrigine Zehra Esra Ilhan , Catherine Philippe , Andrea Marchetto , Philippe Gérard , Stéphane Auvin 19th International Symposium on Microbial Ecology, Aug 2024, Cape Town / Le Cap, South Africa Conference poster hal-04678898v1
	Longitudinal exposure to antiseizure medications shapes gut-derived microbiome composition, resistome, and metabolome Camille Dop , Stéphane Auvin , Patricia Lepage , Zehra Esra Ilhan ISME19 (19th International Symposium on Microbial Ecology), Aug 2024, Cape Town / Le Cap, South Africa Conference poster hal-04680478v1
	Parabens impact interactions among key bacterial members of the early-life gut microbiome Zehra Esra Ilhan , Marie Aerts , Patricia Lepage 3rd International Conference on Microbial Ecotoxicology, Nov 2022, Montpellier, France Conference poster hal-04679185v1
	Bi-directional interactions between anti-seizure medications and gut microbial communities mediate host drug response Zehra Esra Ilhan , Vincent Brochard , Catherine Philippe , Nicolas Lapaque , Stéphane Auvin 18th International Symposium on Microbial Ecology, ISME18, Aug 2022, Lausanne, Switzerland Conference poster hal-04338203v1
	Chronic exposure to antiseizure drugs impacts the gut microbiota community and function. Camille Dop , Stéphane Auvin , Patricia Lepage , Zehra Esra Ilhan 3rd International Conference on Microbial Ecotoxicology-EcotoxicoMic, Nov 2022, Montpellier (FRANCE), France Conference poster hal-04296248v1

	Microbial Drug Interactions and Human Health Zehra Esra Ilhan , Melissa Herbst-Kralovetz Metabolism of Nutrients by Gut Microbiota, The Royal Society of Chemistry, pp.120-149, 2022, ⟨10.1039/9781839160950-00120⟩ Book sections hal-04334073v1

	What happens to microbes after bariatric surgery? Zehra Esra Ilhan 2020 Scientific blog post hal-04679193v1
	Streptococcus Zehra Esra Ilhan 2016 Scientific blog post hal-04679205v1

	Microbiome markers and therapies for autism spectrum disorders Rosa Krajmalnik-Brown , Dae-Wook Kang , Jin Gyoon Park , Joshua Labaer , Zehra Esra Ilhan United States, Patent n° : 11542560. 2018 Patents hal-04678910v1

	Microbiome After Bariatric Surgery and Microbial Insights into Surgical Weight Loss Zehra Esra Ilhan Life Sciences [q-bio]. Arizona State University, 2016. English. ⟨NNT : ⟩ Theses tel-04338142v1

Zehra Esra Ilhan

Research domains

Skills

Publications

Long-Term Continuous Test of H 2 -Induced Denitrification Catalyzed by Palladium Nanoparticles in a Biofilm Matrix

Occurrence of Neonatal Necrotizing Enterocolitis in Premature Neonates and Gut Microbiota: A Case–Control Prospective Multicenter Study

Identifying biodegradation pathways of cetrimonium bromide (CTAB) using metagenome, metatranscriptome, and metabolome tri-omics integration

Organic carbon metabolism is a main determinant of hydrogen demand and dynamics in anaerobic soils

Exposure to anti-seizure medications impact growth of gut bacterial species and subsequent host response

Surgical Menopause and Estrogen Therapy Modulate the Gut Microbiota, Obesity Markers, and Spatial Memory in Rats

Increased expression of antibiotic-resistance genes in biofilm communities upon exposure to cetyltrimethylammonium bromide (CTAB) and other stress conditions

MicroNiche: an R package for assessing microbial niche breadth and overlap from amplicon sequencing data

Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery

The microbiome and gynaecological cancer development, prevention and therapy

Integrative and quantitative bioenergetics: Design of a study to assess the impact of the gut microbiome on host energy balance

Deciphering the complex interplay between microbiota, HPV, inflammation and cancer through cervicovaginal metabolic profiling

Complete dechlorination and mineralization of pentachlorophenol (PCP) in a hydrogen-based membrane biofilm reactor (MBfR)

Differences in fecal microbial metabolites and microbiota of children with autism spectrum disorders

Microbiota–drug interactions: Impact on metabolism and efficacy of therapeutics

pH-Mediated Microbial and Metabolic Interactions in Fecal Enrichment Cultures

Insights into Butyrate Production in a Controlled Fermentation System via Gene Predictions

Enhancing biodegradation of C16-alkyl quaternary ammonium compounds using an oxygen-based membrane biofilm reactor

Total electron acceptor loading and composition affect hexavalent uranium reduction and microbial community structure in a membrane biofilm reactor

Distinctive microbiomes and metabolites linked with weight loss after gastric bypass, but not gastric banding

Insights into Butyrate Production in a Controlled Fermentation System via Gene Predictions

Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease

Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone

The source of inoculum plays a defining role in the development of MEC microbial consortia fed with acetic and propionic acid mixtures

Using a Two-Stage Hydrogen-Based Membrane Biofilm Reactor (MBfR) to Achieve Complete Perchlorate Reduction in the Presence of Nitrate and Sulfate

Reduced Incidence of Prevotella and Other Fermenters in Intestinal Microflora of Autistic Children

Phylogenetic analysis of nitrate- and sulfate-reducing bacteria in a hydrogen-fed biofilm

Effects of Multiple Electron Acceptors on Microbial Interactions in a Hydrogen-Based Biofilm

Effects of Gut Microbes on Nutrient Absorption and Energy Regulation

Herbicide and Antibiotic Removal by Woodchip Denitrification Filters: Sorption Processes

Dissipation of Atrazine, Enrofloxacin, and Sulfamethazine in Wood Chip Bioreactors and Impact on Denitrification

Herbicide and Antibiotic Removal by Woodchip Denitrification Filters: Sorption Processes

Chronic exposure to antiseizure drugs impacts the gut microbiome community and function

Members of the gut microbiota modulate the bioavailability of the antiseizure medication lamotrigine

Longitudinal exposure to antiseizure medications shapes gut-derived microbiome composition, resistome, and metabolome

Parabens impact interactions among key bacterial members of the early-life gut microbiome

Bi-directional interactions between anti-seizure medications and gut microbial communities mediate host drug response

Chronic exposure to antiseizure drugs impacts the gut microbiota community and function.

Microbial Drug Interactions and Human Health

What happens to microbes after bariatric surgery?

Streptococcus

Microbiome markers and therapies for autism spectrum disorders

Microbiome After Bariatric Surgery and Microbial Insights into Surgical Weight Loss