Antoine Danchin

39
Documents

Publications

Publications

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Microbiome Notes—Building a Library of Descriptive Microbial Ecology

Gareth Jenkins , Eric S Boyd , Antoine Danchin , Vincent Hervé
Environmental Microbiology Reports, 2025, 17 (2), ⟨10.1111/1758-2229.70085⟩
Article dans une revue hal-05009644 v1

Environmental Microbiology and Environmental Microbiology Reports : Two Journals, One Goal

Gareth Jenkins , Eric Boyd , Antoine Danchin , Vincent Hervé , Megan Huggett et al.
Environmental Microbiology, 2025, 27 (5), pp.e70078. ⟨10.1111/1462-2920.70078⟩
Article dans une revue hal-05060033 v1
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A model industrial workhorse: $Bacillus\ subtilis$ strain 168 and its genome after a quarter of a century

Erhard Bremer , Alexandra Calteau , Antoine Danchin , Colin Harwood , John D Helmann et al.
Microbial Biotechnology, 2023, 16 (6), pp.1203-1231. ⟨10.1111/1751-7915.14257⟩
Article dans une revue cea-04284953 v1
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A roadmap for the functional annotation of protein families: a community perspective

Valérie De Crecy-Lagard , Rocio Amorin De Hegedus , Cecilia Arighi , Jill Babor , Alex Bateman et al.
Database - The journal of Biological Databases and Curation, 2022, 2022, ⟨10.1093/database/baac062⟩
Article dans une revue hal-04281352 v1
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In vivo , in vitro and in silico : an open space for the development of microbe‐based applications of synthetic biology

Antoine Danchin
Microbial Biotechnology, 2021, 15 (1), pp.42-64. ⟨10.1111/1751-7915.13937⟩
Article dans une revue hal-04542701 v1
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Queuine, a bacterial-derived hypermodified nucleobase, shows protection in in vitro models of neurodegeneration

Patricia Richard , Lucie Kozlowski , Hélène Guillorit , Patrice Garnier , Nicole Mcknight et al.
PLoS ONE, 2021, 16 (8), pp.e0253216. ⟨10.1371/journal.pone.0253216⟩
Article dans une revue hal-04713901 v1
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Visualizing the invisible: class excursions to ignite children’s enthusiasm for microbes

Terry J Mcgenity , Amare Gessesse , John E Hallsworth , Esther Garcia Cela , Carol Verheecke‐vaessen et al.
Microbial Biotechnology, 2020, 13, pp.844-887. ⟨10.1111/1751-7915.13576⟩
Article dans une revue (article de synthèse) hal-02733228 v1
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Evaluating the probability of CRISPR‐based gene drive contaminating another species

Virginie Courtier‐orgogozo , Antoine Danchin , Pierre‐henri Gouyon , Christophe Boëte
Evolutionary Applications, 2020, ⟨10.1111/eva.12939⟩
Article dans une revue mnhn-02559844 v1
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Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli

Yong Wang , Jiao-Mei Huang , Ying-Li Zhou , Alexandre Almeida , Robert D Finn et al.
BMC Genomics, 2020, 21 (1), pp.408. ⟨10.1186/s12864-020-06807-4⟩
Article dans une revue inserm-02972477 v1

A new transmission route for the propagation of the SARS-CoV-2 coronavirus

Antoine Danchin , Tuen Wai Patrick Ng , Gabriel Turinici
Biology, 2020, 10 (1), pp.10. ⟨10.1101/2020.02.14.20022939⟩
Article dans une revue hal-02872801 v1
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Biochemical and mathematical lessons from the evolution of the SARS- CoV-2 virus: paths for novel antiviral warfare

Nicolas Cluzel , Amaury Lambert , Yvon Maday , Gabriel Turinici , Antoine Danchin
Comptes Rendus. Biologies, 2020, 343 (2), pp.177-209. ⟨10.5802/crbiol.16⟩
Article dans une revue hal-02985714 v2

Immunity after COVID-19: protection or sensitization ?

Antoine Danchin , Gabriel Turinici
Mathematical Biosciences, 2020, 331, pp.108499. ⟨10.1016/j.mbs.2020.108499⟩
Article dans une revue hal-02872798 v1
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Mutations in the Global Transcription Factor CRP/CAP: Insights from Experimental Evolution and Deep Sequencing

Pernille Ott Frendorf , Ida Lauritsen , Agnieszka Sekowska , Antoine Danchin , Morten H. H. Nørholm
Computational and Structural Biotechnology Journal, 2019, 17, pp.730-736. ⟨10.1016/j.csbj.2019.05.009⟩
Article dans une revue hal-02433736 v1
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The Enigmatic Genome of an Obligate Ancient Spiroplasma Symbiont in a Hadal Holothurian

Li-Sheng He , Pei-Wei Zhang , Jiao-Mei Huang , Fang-Chao Zhu , Antoine Danchin et al.
Applied and Environmental Microbiology, 2018, 84 (1), pp.e01965-17. ⟨10.1128/AEM.01965-17.⟩
Article dans une revue cea-04560397 v1
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Retour sur les origines de la vie

Antoine Danchin
Médecine/Sciences, 2018, 34 (10), pp.857-864. ⟨10.1051/medsci/2018212⟩
Article dans une revue hal-02970083 v1
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Retour sur les origines de la vie

Antoine Danchin
Médecine/Sciences, 2018, 34 (11), pp.984-989. ⟨10.1051/medsci/2018234⟩
Article dans une revue hal-02970159 v1
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Bacillus subtilis, the model Gram-positive bacterium: 20years of annotation refinement

Rainer Borriss , Antoine Danchin , Colin R. Harwood , Claudine Médigue , Eduardo P. C. Rocha et al.
Microbial Biotechnology, 2018, 11 (1), pp.3-17. ⟨10.1111/1751-7915.13043⟩
Article dans une revue cea-02291345 v1

Genomic characterization of symbiotic mycoplasmas from the stomach of deep‐sea isopod bathynomus sp

Yong Wang , Jiao‐mei Huang , Shao‐lu Wang , Zhao‐ming Gao , Ai‐qun Zhang et al.
Environmental Microbiology, 2016, 18 (8), pp.2646-2659. ⟨10.1111/1462-2920.13411⟩
Article dans une revue istex hal-04570966 v1

An updated metabolic view of the Bacillus subtilis 168 genome

Eugeni Belda , Agnieszka Sekowska , François Le Fèvre , Anne Morgat , Damien Mornico et al.
Microbiology, 2013, 159 (Pt_4), pp.757-770. ⟨10.1099/mic.0.064691-0⟩
Article dans une revue hal-04578023 v1
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Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC

Stefan Engelen , David Vallenet , Claudine Médigue , Antoine Danchin
BMC Genomics, 2012, 13 (1), pp.69. ⟨10.1186/1471-2164-13-69⟩
Article dans une revue hal-04579011 v1

Cells need safety valves

Antoine Danchin
BioEssays, 2009, 31 (7), pp.769-773. ⟨10.1002/bies.200900024⟩
Article dans une revue hal-04581563 v1

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

Valérie Barbe , Stéphane Cruveiller , Frank Kunst , Patricia Lenoble , Guillaume Meurice et al.
Microbiology, 2009, 155 (6), pp.1758-1775. ⟨10.1099/mic.0.027839-0⟩
Article dans une revue hal-04581597 v1
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Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli

Ye Jin , Rory M Watt , Antoine Danchin , Jian-Dong Huang
BMC Genomics, 2009, 10 (1), pp.165. ⟨10.1186/1471-2164-10-165⟩
Article dans une revue hal-04581684 v1

Proteome analysis of the phenotypic variation process inPhotorhabdus luminescens

Evelyne Turlin , Géraldine Pascal , Jean-Claude Rousselle , Pascal Lenormand , Saravuth Ngo et al.
Proteomics, 2006, 6 (9), pp.2705-2725. ⟨10.1002/PMIC.200500646⟩
Article dans une revue istex hal-02985560 v1

Persistent biases in the amino acid composition of prokaryotic proteins

Géraldine Pascal , Claudine Médigue , Antoine Danchin
BioEssays, 2006, 28 (7), pp.726-738. ⟨10.1002/BIES.20431⟩
Article dans une revue istex hal-02985564 v1

Regulation of the Bacillus subtilis ytmI operon, involved in sulfur metabolism

Pierre Burguière , Juliette Fert , Isabelle Guillouard , Sandrine Auger , Antoine Danchin et al.
Journal of Bacteriology, 2005, 87 (17), pp.6019-6030. ⟨10.1128/JB.187.17.6019-6030.2005⟩
Article dans une revue hal-02681047 v1

Universal biases in protein composition of model prokaryotes

Géraldine Pascal , Claudine Médigue , Antoine Danchin
Proteins - Structure, Function and Bioinformatics, 2005, 60 (1), pp.27-35. ⟨10.1002/PROT.20475⟩
Article dans une revue istex hal-02985536 v1

Three different systems participate in l-Cystine uptake in Bacillus subtilis

Pierre Burguière , Sandrine Auger , Marie-Françoise Hullo , Antoine Danchin , Isabelle Martin-Verstraete
Journal of Bacteriology, 2004, 186 (15), pp.4875-4884. ⟨10.1128/JB.186.15.4875-4884.2004⟩
Article dans une revue hal-02889124 v1

The PhoP-PhoQ two-component regulatory system of Photorhabdus luminescens is essential for virulence in insects

Sylviane Derzelle , Evelyne Turlin , Éric Duchaud , Sylvie Pages , Franck Kunst et al.
Journal of Bacteriology, 2004, 186 (5), pp.1270-1279. ⟨10.1128/JB.186.5.1270-1279.2004⟩
Article dans une revue hal-02681185 v1

The metNPQ operon of Bacillus subtilis encodes an ABC permease transporting methionine sulfoxide, D-and L-methionine.

Marie-Françoise Hullo , Sandrine Auger , Elie Dassa , Antoine Danchin , Isabelle Martin-Verstraete
Research in Microbiology, 2004, 155 (2), pp.80-86. ⟨10.1016/j.resmic.2003.11.008⟩
Article dans une revue istex hal-00020363 v1

Exploring the Penicillium marneffei genome

Kwok-Yung Yuen , Géraldine Pascal , Samson Wong , Philippe Glaser , Patrick Woo et al.
Archives of Microbiology, 2003, 179 (5), pp.339-353. ⟨10.1007/S00203-003-0533-8⟩
Article dans une revue istex hal-02985518 v1

Identification of Bacillus subtilis CysL, a regulator of the cysJI Operon, which encodes sulfite reductase

Isabelle Guillouard , Sandrine Auger , Marie-Françoise Hullo , Farid Chetouani , Antoine Danchin et al.
Journal of Bacteriology, 2002, 184 (17), pp.4681-4689. ⟨10.1128/jb.184.17.4681-4689.2002⟩
Article dans une revue hal-02889129 v1

The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination

Sandrine Auger , W. Yuen , Antoine Danchin , Isabelle Martin-Verstraete
Microbiology, 2002, 148 (2), pp.507-518. ⟨10.1099/00221287-148-2-507⟩
Article dans une revue hal-02889132 v1

Global Expression Profile of Bacillus subtilis Grown in the Presence of Sulfate or Methionine

Sandrine Auger , Antoine Danchin , Isabelle Martin-Verstraete
Journal of Bacteriology, 2002, 184 (18), pp.5179-5186. ⟨10.1128/jb.184.18.5179-5186.2002⟩
Article dans une revue hal-02889134 v1

Sulfur-limitation-regulated proteins in Bacillus subtilis: a two-dimensional gel electrophoresis study

Jean-Yves Coppée , Sandrine Auger , Evelyne Turlin , Agnieszka Sekowska , Jean-Pierre Le Caer et al.
Microbiology, 2001, 147 (6), pp.1631-1640. ⟨10.1099/00221287-147-6-1631⟩
Article dans une revue hal-02889151 v1
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The SARS Case Study: An Alarm Clock?

Gabriel Turinici , Antoine Danchin
M. Tibayrenc. Encyclopedia of Infectious Diseases: Modern Methodologies, John Wiley & Sons, Inc., Hoboken, NJ, USA., pp.151-162, 2006, ⟨10.1002/9780470114209.ch9⟩
Chapitre d'ouvrage hal-00536581 v1