Adrien Castinel

24
Documents

Publications

Publications

The Diversity of Oligosaccharide Composition in Rabbit Milk and Its Association with the Development of the Cecal Microbiota and the Survival of Young Rabbits

Sylvie Combes , Christelle Knudsen , Mathilde Rumeau , Géraldine Pascal , Laurent Cauquil et al.
Journal of Nutrition, 2025, 155 (12), pp.4222-4238. ⟨10.1016/j.tjnut.2025.10.013⟩
Article dans une revue hal-05403529 v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

Camille Eché , Carole Iampietro , Clément Birbes , Andreea Dréau , Claire Kuchly et al.
Scientific Data , 2023, 10 (1), pp.369. ⟨10.1038/s41597-023-02249-1⟩
Article dans une revue (data paper) hal-04122201 v1
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques et al.
Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩
Article dans une revue hal-03765882 v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm et al.
Molecular Ecology Resources, 2022, 22 (6), pp.2411-2428. ⟨10.1111/1755-0998.13620⟩
Article dans une revue hal-03652234 v1
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Early Introduction of Plant Polysaccharides Drives the Establishment of Rabbit Gut Bacterial Ecosystems and the Acquisition of Microbial Functions

Charlotte Paës , Thierry Gidenne , Karine Bébin , Joël Duperray , Charly Gohier et al.
mSystems, 2022, 18 p. ⟨10.1128/msystems.00243-22⟩
Article dans une revue hal-03699002 v1
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A carvacrol‐based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens

Marion Allaoua , Elsa Bonnafé , Pierre Etienne , Virginie Noirot , Jean‐françois Gabarrou et al.
Journal of Applied Microbiology, 2022, 132 (6), pp.4501-4516. ⟨10.1111/jam.15521⟩
Article dans une revue hal-03607325 v1
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A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus

Boudjema Imarazene , Kang Du , Séverine Beille , Elodie Jouanno , Romain Feron et al.
Current Biology, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩
Article dans une revue hal-03337251 v1

Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs

Francesca Romana Massacci , Alessandra Morelli , Lucilla Cucco , Adrien Castinel , Roberta Ortenzi et al.
Animals, 2020, 10 (4), pp.676. ⟨10.3390/ani10040676⟩
Article dans une revue hal-02964221 v1
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A tunable filter for high molecular weight DNA selection and linked-read sequencing

Nicolas Milon , Juan-Luis Fuentes Rojas , Adrien Castinel , Laurent Bigot , Géraud Bouwmans et al.
Lab on a Chip, 2020, 20 (1), pp.175-184. ⟨10.1039/C9LC00965E⟩
Article dans une revue hal-02400601 v1

Host genotype and amoxicillin administration affect the incidence of diarrhoea and faecal microbiota of weaned piglets during a natural multiresistant ETEC infection

Francesca Massacci , Silvia Tofani , Claudio Forte , Micol Bertocchi , Carmela Lovito et al.
Journal of Animal Breeding and Genetics, 2019, ⟨10.1111/jbg.12432⟩
Article dans une revue hal-02618422 v1
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Volume reduction and automation of DNAprep libraries for low pass sequencing

Marcuzzo Camille , Cervin Guyomar , Amandine Suin , Adrien Castinel , Carole Iampietro et al.
Assemblée générale France Génomique, Jun 2023, Paris, France
Poster de conférence hal-04590691 v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin et al.
ECCB2022, Sep 2022, Sitges, Spain
Poster de conférence hal-03788263 v1
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Implementation of new methods for metagenomics analysis using PacBio HiFi sequencing

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence hal-03541346 v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads Taxonomic profile HiFi vs Short reads assembly

Joanna Fourquet , Jean Mainguy , Maïna Vienne , Céline Noirot , Pierre Martin et al.
JOBIM 2022, Jul 2022, Rennes, France. Actes des exposés (keynotes, contributions orales, mini-symposia) : JOBIM2022_proceedings_oral.pdf (23 Mo) et actes des posters et démos : JOBIM2022_proceedings_posters_demos.pdf (19 Mo). ⟨10.15454/1.5572369328961167E12⟩
Poster de conférence hal-03771202 v1
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Strengths and limits of long read metabarcoding

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.
ECCB 2022, Sep 2022, Meliá Sitges, Spain
Poster de conférence hal-03848228 v1
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Avancées réalisées en métabarcoding et en métagénomique dans le cadre du projet SeqOccIn grâce au séquençage longs fragments

Denis Milan , Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes et al.
Colloque INRAE Genomics 2022, May 2022, Orléans, France. , 2022
Poster de conférence hal-03776011 v1
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Benefits of PacBio HiFi long reads for metagenomic whole genome analysis

Adrien Castinel , Jean Mainguy , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.
Environmental And Agronomical Genomics Symposium, Oct 2021, Tours, France
Poster de conférence hal-03538657 v1
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Improving microbial taxonomic profiling with long read technologies

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.
JOBIM2020, Jun 2020, Online, France
Poster de conférence hal-03177058 v1
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis

Carole Iampietro , Camille Eché , Adrien Castinel , Rémy-Félix Serre , Christophe Klopp et al.
PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020
Poster de conférence hal-02947690 v1
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Identification of genomic regions for high-resolution taxonomic profiling using long-read sequencing technology

Jean Mainguy , Olivier Bouchez , Adrien Castinel , Sylvie Combes , Christine Gaspin et al.
JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France. , 2019
Poster de conférence hal-02791605 v1
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Improvement of the Bos taurus Genome Assembly using New Sequencing Technologies

Camille Eché , Carole Iampietro , Clement Birbes , Andreea Dreau , Claire Kuchly et al.
Discoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France
Communication dans un congrès hal-04096124 v1
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The benefits of long read HiFi sequencing for metabarcoding analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.
PACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France
Communication dans un congrès hal-03740586 v1
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The benefits of long read HiFi sequencing for metagenomic analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.
France génomique - VIIème Animation Wetlab et Bioinfo, Nov 2022, Strasbourg, France
Communication dans un congrès hal-03896074 v1

metagWGS : a workflow to analyse short or long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin et al.
Bioinfo Biosta Genotoul day, Dec 2022, Castanet-Tolosan, France
Communication dans un congrès hal-03944382 v1