Adrien Castinel

27
Documents

Publications

Publications

Unravelling Wood Extractive Resistance in Phanerochaete chrysosporium Through Random Mutagenesis

Delphine Noel , Duy Vuong Nguyen , Marie‐laure Ancel , Emilie Rezer , Adrien Castinel et al.

Environmental Microbiology, 2025, 27 (12), pp.21000-21008. ⟨10.1111/1462-2920.70205⟩

Article dans une revue hal-05459218v1

The Diversity of Oligosaccharide Composition in Rabbit Milk and Its Association with the Development of the Cecal Microbiota and the Survival of Young Rabbits

Sylvie Combes , Christelle Knudsen , Mathilde Rumeau , Géraldine Pascal , Laurent Cauquil et al.

Journal of Nutrition, 2025, 155 (12), pp.4222-4238. ⟨10.1016/j.tjnut.2025.10.013⟩

Article dans une revue hal-05515081v1

The Diversity of Oligosaccharide Composition in Rabbit Milk and Its Association with the Development of the Cecal Microbiota and the Survival of Young Rabbits

Sylvie Combes , Christelle Knudsen , Mathilde Rumeau , Géraldine Pascal , Laurent Cauquil et al.

Journal of Nutrition, 2025, 155 (12), pp.4222-4238. ⟨10.1016/j.tjnut.2025.10.013⟩

Article dans une revue hal-05403529v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

Camille Eché , Carole Iampietro , Clément Birbes , Andreea Dréau , Claire Kuchly et al.

Scientific Data , 2023, 10 (1), pp.369. ⟨10.1038/s41597-023-02249-1⟩

Article dans une revue (data paper) hal-04122201v1
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques et al.

Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩

Article dans une revue hal-03765882v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm et al.

Molecular Ecology Resources, 2022, 22 (6), pp.2411-2428. ⟨10.1111/1755-0998.13620⟩

Article dans une revue hal-03652234v1
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Early Introduction of Plant Polysaccharides Drives the Establishment of Rabbit Gut Bacterial Ecosystems and the Acquisition of Microbial Functions

Charlotte Paës , Thierry Gidenne , Karine Bébin , Joël Duperray , Charly Gohier et al.

mSystems, 2022, 18 p. ⟨10.1128/msystems.00243-22⟩

Article dans une revue hal-03699002v1
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A carvacrol‐based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens

Marion Allaoua , Elsa Bonnafé , Pierre Etienne , Virginie Noirot , Jean‐françois Gabarrou et al.

Journal of Applied Microbiology, 2022, 132 (6), pp.4501-4516. ⟨10.1111/jam.15521⟩

Article dans une revue hal-03607325v1
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A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus

Boudjema Imarazene , Kang Du , Séverine Beille , Elodie Jouanno , Romain Feron et al.

Current Biology, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩

Article dans une revue hal-03337251v1
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A tunable filter for high molecular weight DNA selection and linked-read sequencing

Nicolas Milon , Juan-Luis Fuentes Rojas , Adrien Castinel , Laurent Bigot , Géraud Bouwmans et al.

Lab on a Chip, 2020, 20 (1), pp.175-184. ⟨10.1039/C9LC00965E⟩

Article dans une revue hal-02400601v1

Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs

Francesca Romana Massacci , Alessandra Morelli , Lucilla Cucco , Adrien Castinel , Roberta Ortenzi et al.

Animals, 2020, 10 (4), pp.676. ⟨10.3390/ani10040676⟩

Article dans une revue hal-02964221v1

Host genotype and amoxicillin administration affect the incidence of diarrhoea and faecal microbiota of weaned piglets during a natural multiresistant ETEC infection

Francesca Massacci , Silvia Tofani , Claudio Forte , Micol Bertocchi , Carmela Lovito et al.

Journal of Animal Breeding and Genetics, 2019, ⟨10.1111/jbg.12432⟩

Article dans une revue hal-02618422v1

Limites et avantages du séquençage métabarcoding long-reads ?

Géraldine Pascal , Jean Mainguy , Maelle Pomies , Adrien Castinel , Sylvie Combes et al.

FROGSDays 2025, INRAE, Dec 2025, Castanet Tolosan, France

Communication dans un congrès hal-05492424v1
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Improvement of the Bos taurus Genome Assembly using New Sequencing Technologies

Camille Eché , Carole Iampietro , Clement Birbes , Andreea Dreau , Claire Kuchly et al.

Discoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France

Communication dans un congrès hal-04096124v1

metagWGS : a workflow to analyse short or long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin et al.

Bioinfo Biosta Genotoul day, Dec 2022, Castanet-Tolosan, France

Communication dans un congrès hal-03944382v1
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The benefits of long read HiFi sequencing for metagenomic analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.

France génomique - VIIème Animation Wetlab et Bioinfo, Nov 2022, Strasbourg, France

Communication dans un congrès hal-03896074v1
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The benefits of long read HiFi sequencing for metabarcoding analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.

PACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France

Communication dans un congrès hal-03740586v1
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Volume reduction and automation of DNAprep libraries for low pass sequencing

Marcuzzo Camille , Cervin Guyomar , Amandine Suin , Adrien Castinel , Carole Iampietro et al.

Assemblée générale France Génomique, Jun 2023, Paris, France

Poster de conférence hal-04590691v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin et al.

ECCB2022, Sep 2022, Sitges, Spain

Poster de conférence hal-03788263v1
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Implementation of new methods for metagenomics analysis using PacBio HiFi sequencing

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.

Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States

Poster de conférence hal-03541346v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads Taxonomic profile HiFi vs Short reads assembly

Joanna Fourquet , Jean Mainguy , Maïna Vienne , Céline Noirot , Pierre Martin et al.

JOBIM 2022, Jul 2022, Rennes, France. Actes des exposés (keynotes, contributions orales, mini-symposia) : JOBIM2022_proceedings_oral.pdf (23 Mo) et actes des posters et démos : JOBIM2022_proceedings_posters_demos.pdf (19 Mo). ⟨10.15454/1.5572369328961167E12⟩

Poster de conférence hal-03771202v1
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Strengths and limits of long read metabarcoding

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.

ECCB 2022, Sep 2022, Meliá Sitges, Spain

Poster de conférence hal-03848228v1
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Avancées réalisées en métabarcoding et en métagénomique dans le cadre du projet SeqOccIn grâce au séquençage longs fragments

Denis Milan , Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes et al.

Colloque INRAE Genomics 2022, May 2022, Orléans, France. , 2022

Poster de conférence hal-03776011v1
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Benefits of PacBio HiFi long reads for metagenomic whole genome analysis

Adrien Castinel , Jean Mainguy , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.

Environmental And Agronomical Genomics Symposium, Oct 2021, Tours, France

Poster de conférence hal-03538657v1
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Improving microbial taxonomic profiling with long read technologies

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.

JOBIM2020, Jun 2020, Online, France

Poster de conférence hal-03177058v1
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis

Carole Iampietro , Camille Eché , Adrien Castinel , Rémy-Félix Serre , Christophe Klopp et al.

PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020

Poster de conférence hal-02947690v1
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Identification of genomic regions for high-resolution taxonomic profiling using long-read sequencing technology

Jean Mainguy , Olivier Bouchez , Adrien Castinel , Sylvie Combes , Christine Gaspin et al.

JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France. , 2019

Poster de conférence hal-02791605v1