|
Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom
Matthieu Muffato
,
Alexandra Louis
,
Nga Thi Thuy Nguyen
,
Joseph Lucas
,
Camille Berthelot
Journal articles
hal-03943655v1
|
|
Genome structures resolve the early diversification of teleost fishes
Elise Parey
,
Alexandra Louis
,
Jérôme Montfort
,
Olivier Bouchez
,
Céline Lopez-Roques
Journal articles
hal-04065839v1
|
|
Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors
Nga thi thuy Nguyen
,
Pierre Vincens
,
Jean François Dufayard
,
Hugues Roest crollius
,
Alexandra Louis
Journal articles
hal-03438462v1
|
|
An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication
Elise Parey
,
Alexandra Louis
,
Jérôme Montfort
,
Yann Guiguen
,
Hugues Roest Crollius
Journal articles
hal-03876769v1
|
|
Classification of non-coding variants with high pathogenic impact
Lambert Moyon
,
Camille Berthelot
,
Alexandra Louis
,
Nga Thi Thuy Nguyen
,
Hugues Roest Crollius
Journal articles
hal-03698847v1
|
|
RapGreen, an interactive software and web package to explore and analyze phylogenetic trees
Jean-François Dufayard
,
Stéphanie Bocs
,
Valentin Guignon
,
Delphine Larivière
,
Alexandra Louis
Journal articles
hal-03541670v1
|
|
The bowfin genome illuminates the developmental evolution of ray-finned fishes
Andrew Thompson
,
M. Brent Hawkins
,
Elise Parey
,
Dustin Wcisel
,
Tatsuya Ota
Journal articles
hal-03329977v1
|
|
Synteny-Guided Resolution of Gene Trees Clarifies the Functional Impact of Whole-Genome Duplications
Elise Parey
,
Alexandra Louis
,
Cédric Cabau
,
Yann Guiguen
,
Hugues Roest Crollius
Journal articles
hal-03457579v1
|
|
Synteny-guided resolution of gene trees clarifies the functional impact of whole-genome duplications
Elise Parey
,
Alexandra Louis
,
Cédric Cabau
,
Yann Guiguen
,
Hugues Roest Crollius
Journal articles
hal-03038540v1
|
|
ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates
Justine Dardaillon
,
Delphine Dauga
,
Paul Simion
,
Emmanuel Faure
,
Takeshi Onuma
Journal articles
hal-02415680v1
|
|
Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing
Nga thi thuy Nguyen
,
Pierre Vincens
,
Hugues Roest Crollius
,
Alexandra Louis
Journal articles
hal-02415691v1
|
|
Chromosome evolution at the origin of the ancestral vertebrate genome
Christine Sacerdot
,
Alexandra Louis
,
Céline Bon
,
Camille Berthelot
,
Hugues Roest Crollius
Journal articles
hal-02415626v1
|
|
Amphioxus functional genomics and the origins of vertebrate gene regulation
Ferdinand Marletaz
,
Panos N. Firbas
,
Ignacio Maeso
,
Juan J. Tena
,
Ozren Bogdanovic
Journal articles
hal-02000511v1
|
|
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets
Matija Brozovic
,
Christelle Dantec
,
Justine Dardaillon
,
Delphine Dauga
,
Emmanuel Faure
Journal articles
hal-01636650v1
|
|
Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation
Claudia Chica
,
Alexandra Louis
,
Hugues Roest Crollius
,
Vincent Colot
,
François Roudier
Journal articles
hal-02415743v1
|
|
Erratum to :"Understanding Brassicaceae evolution through ancestral genome reconstruction" (vol 16, 262, 2015)
Florent Murat
,
Alexandra Louis
,
Florian Maumus
,
Alix Armero
,
Richard Cooke
Journal articles
hal-02630062v1
|
|
GenomicusPlants: a web resource to study genome evolution in flowering plants
Alexandra Louis
,
Florent Murat
,
Jerome Salse
,
Hugues Roest Crollius
Journal articles
hal-01168460v1
|
|
Genomicus update 2015: KaryoView and MatrixView provide a genome-wide perspective to multispecies comparative genomics
Alexandra Louis
,
Nga thi thuy Nguyen
,
Matthieu Muffato
,
Hugues Roest crollius
Journal articles
hal-03352660v1
|
|
Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome.
Magali Naville
,
Minaka Ishibashi
,
Marco Ferg
,
Hemant Bengani
,
Silke Rinkwitz
Journal articles
hal-01156469v1
|
|
Understanding Brassicaceae evolution through ancestral genome reconstruction
Florent Murat
,
Alexandra Louis
,
Florian Maumus
,
Alix Armero Villanueva
,
Richard Cooke
Journal articles
hal-01281832v1
|
|
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.
Camille Berthelot
,
Frédéric Brunet
,
Domitille Chalopin
,
Amélie Juanchich
,
Maria Bernard
Journal articles
hal-01193812v1
|
|
Genomicus: five genome browsers for comparative genomics in eukaryota
Alexandra Louis
,
Matthieu Muffato
,
Hugues Roest Crollius
Journal articles
hal-03352666v1
|
|
How much does the amphioxus genome represent the ancestor of chordates?
A. Louis
,
H. Roest Crollius
,
M. Robinson-Rechavi
Journal articles
hal-03352669v1
|
|
Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes
M. Muffato
,
A. Louis
,
C. Poisnel
,
H. Crollius
Journal articles
hal-03352670v1
|
|
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
France Denoeud
,
Simon Henriet
,
Sutada Mungpakdee
,
Jean-Marc Aury
,
Corinne da Silva
Journal articles
halsde-00544648v1
|
|
Identification of genomic features using microsyntenies of domains: Domain teams
S. Pasek
,
Anne Bergeron
,
Jean Loup Risler
,
Alexandra Louis
,
Emmanuelle Ollivier
Journal articles
hal-03352673v1
|
|
PHYTOPROT: a database of clusters of plant proteins
S. Mohseni-Zadeh
,
Alexandra Louis
Journal articles
hal-03352674v1
|
|
An incremental algorithm for Z-value computations
J.-C. Aude
,
A. Louis
Journal articles
hal-03352687v1
|
|
Deciphering Arabidopsis thaliana gene neighborhoods through bibliographic co-citations
A. Louis
,
H. Chiapello
,
C. Fabry
,
E. Ollivier
,
A. Hénaut
Journal articles
hal-03352685v1
|
|
Deciphering Arabidopsis thaliana gene neighborhoods through bibliographic co-citations
A. Louis
,
Hélène Chiapello
,
C. Fabry
,
E. Ollivier
,
A. Henaut
Journal articles
hal-02676436v1
|
|
Massive Sequence Comparisons as a Help in Annotating Genomic Sequences
Alexandra Louis
,
Emmanuelle Ollivier
,
Jean-Christophe Aude
,
Jean Loup Risler
Genome Research, 2001
Journal articles
hal-03352694v1
|