Ariane Bize

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Publications

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Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Archaeal Viruses Subcommittee, 2025

Mart Krupovic , Diana Paola Baquero , Eduardo A Bignon , Ariane Bize , Guillaume Borrel et al.

Journal of General Virology, 2025, 106 (7), pp.002117. ⟨10.1099/jgv.0.002117⟩

Article dans une revue pasteur-05212168v1
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Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data.

Cédric Midoux , Olivier Rué , Olivier Chapleur , Ariane Bize , Valentin Loux et al.

Journal of Open Source Software, 2024, 9 (103), pp.6704. ⟨10.21105/joss.06704⟩

Article dans une revue hal-04785149v1
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Establishing Host–Virus Link Through Host Metabolism: Viral DNA SIP Validation Using T4 Bacteriophage and E. coli

Vuong Quoc Hoang Ngo , Maximilien Sotomski , Angeline Guenne , Mahendra Mariadassou , Mart Krupovic et al.

Current Microbiology, 2024, 81 (9), pp.266. ⟨10.1007/s00284-024-03774-x⟩

Article dans une revue pasteur-04647500v1

Fate of SARS-CoV-2 coronavirus in wastewater treatment sludge during storage and thermophilic anaerobic digestion

Sabrina Guérin-Rechdaoui , Ariane Bize , Camille Levesque-Ninio , Alice Janvier , Carlyne Lacroix et al.

Environmental Research, 2022, 214 (Pt 4), pp.114057. ⟨10.1016/j.envres.2022.114057⟩

Article dans une revue hal-03776208v1
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Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Vuong Quoc Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur et al.

Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16120⟩

Article dans une revue hal-03727436v1

Impacts of disinfected wastewater irrigation on soil characteristics, microbial community composition, and crop yield

Lays Paulino Leonel , Ariane Bize , Mahendra Mariadassou , Cédric Midoux , Jerusa Schneider et al.

Blue-Green Systems, 2022, 4 (2), pp.247-271. ⟨10.2166/bgs.2022.126⟩

Article dans une revue hal-03894086v1

Wild type and variants of SARS-COV-2 in Parisian sewage: presence in raw water and through processes in wastewater treatment plants

Melissa López Viveros , Sam Azimi , Elodie Pichon , C. Roose-Amsaleg , Ariane Bize et al.

Environmental Science and Pollution Research, 2022, 29 (44), pp.67442-67449. ⟨10.1007/s11356-022-22665-x⟩

Article dans une revue hal-03776214v1
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Microbial and functional characterization of granulated sludge from full-scale UASB thermophilic reactor applied to sugarcane vinasse treatment

Franciele Pereira Camargo , Isabel Kimiko Sakamoto , Tiago Palladino Delforno , Cédric Midoux , Iolanda Cristina Silveira Duarte et al.

Environmental Technology, 2022, pp.1-42. ⟨10.1080/09593330.2022.2052361⟩

Article dans une revue hal-03634517v1

Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions

Franciele Pereira Camargo , Isabel Kimiko Sakamoto , Tiago Palladino Delforno , Mahendra Mariadassou , Valentin Loux et al.

Journal of Environmental Management, 2021, 291, pp.112631. ⟨10.1016/j.jenvman.2021.112631⟩

Article dans une revue hal-03211333v1
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Bacterial Consumption of T4 Phages

Jean-Jacques Godon , Ariane Bize , Hoang Ngo , Laurent Cauquil , Mathieu Almeida et al.

Microorganisms, 2021, 9 (9), pp.1852. ⟨10.3390/microorganisms9091852⟩

Article dans une revue hal-03386267v1
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Gradual development of ammonia-induced syntrophic acetate-oxidizing activities under mesophilic and thermophilic conditions quantitatively tracked using multiple isotopic approaches

Liping Hao , Lu Fan , Olivier Chapleur , Angéline Guenne , Ariane Bize et al.

Water Research, 2021, 204, ⟨10.1016/j.watres.2021.117586⟩

Article dans une revue hal-03331143v1
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Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

Ariane Bize , Cédric Midoux , Mahendra Mariadassou , Sophie Schbath , Patrick Forterre et al.

BMC Genomics, 2021, 22, ⟨10.1186/s12864-021-07471-y⟩

Article dans une revue hal-03176011v1

Screening design of nutritional and physicochemical parameters on bio-hydrogen and volatile fatty acids production from Citrus Peel Waste in batch reactors

Franciele Pereira Camargo , Isabel Kimiko Sakamoto , Ariane Bize , Iolanda Cristina Silveira Duarte , Edson Luiz Silva et al.

International Journal of Hydrogen Energy, 2021, 46 (11), pp.7794-7809. ⟨10.1016/j.ijhydene.2020.06.084⟩

Article dans une revue hal-03351380v1

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater

Tiago P. Delforno , Thais Z. Macedo , Cedric Midoux , Gileno V. Lacerda , Olivier Rué et al.

Science of the Total Environment, 2019, 2019 (649), pp.482-494. ⟨10.1016/j.scitotenv.2018.08.328⟩

Article dans une revue hal-01888286v1

Impact of wet aerobic pretreatments on cellulose accessibility and bacterial communities in rape straw

J.H Tian , A.M. Pourcher , A. Bize , A Wazeri , Pascal Peu

Bioresource Technology, 2017, 237, pp.31-38. ⟨10.1016/j.biortech.2017.03.142⟩

Article dans une revue hal-02606454v1
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Whole Proteome Analyses on Ruminiclostridium cellulolyticum Show a Modulation of the Cellulolysis Machinery in Response to Cellulosic Materials with Subtle Differences in Chemical and Structural Properties

Nelly Badalato , A. Guillot , V. Sabarly , M. Dubois , Nina Pourette et al.

PLoS ONE, 2017, 12 (1), pp.e0170524. ⟨10.1371/journal.pone.0170524⟩

Article dans une revue hal-01555491v1

Community shifts within anaerobic digestion microbiota facing phenol inhibition: Towards early warning microbial indicators?

S. Poirier , A. Bize , C. Bureau , T. Bouchez , O. Chapleur

Water Research, 2016, 100, pp.296-305. ⟨10.1016/j.watres.2016.05.041⟩

Article dans une revue hal-02604543v1

New insights into the key microbial phylotypes of anaerobic sludge digesters under different operational conditions

Liping Hao , Ariane Bize , Delphine Conteau , O. Chapleur , Sophie Courtois et al.

Water Research, 2016, 102 (octobre), pp.158-169. ⟨10.1016/j.watres.2016.06.014⟩

Article dans une revue hal-01602845v1

Shotgun metaproteomic profiling of biomimetic anaerobic digestion processes treating sewage sludge

Ariane Bize , Laëtitia Cardona , Elie Desmond-Le Quéméner , Audrey Battimelli , Nelly Badalato et al.

Proteomics, 2015, 15 (20), pp.3532-43. ⟨10.1002/pmic.201500041⟩

Article dans une revue istex hal-01536494v1

Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity

Fan Lue , Ariane Bize , Alain Guillot , Veronique Monnet , Céline Madigou et al.

The International Society of Microbiologial Ecology Journal, 2014, 8 (1), pp.88-102. ⟨10.1038/ismej.2013.120⟩

Article dans une revue hal-01204297v1

Co-inoculating ruminal content neither provides active hydrolytic microbes nor improves methanization of (13) C-cellulose in batch digesters

O. Chapleur , Ariane Bize , Thibaut Serain , Laurent Mazéas , T. Bouchez

FEMS Microbiology Ecology, 2014, 87 (3), pp.616-619. ⟨10.1111/1574-6941.12249⟩

Article dans une revue hal-02598975v1
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Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon.

Carole Jaubert , Chloë Danioux , Jacques Oberto , Diego Cortez , Ariane Bize et al.

Biology Open, 2013, 3 (4), pp.130010. ⟨10.1098/rsob.130010⟩

Article dans une revue hal-00818894v1

Enigmatiques virus d’archées

A. Bize , G. Sezonov , D. Prangishvili

Biologie Aujourd'hui, 2013, 207 (3), pp.169-179. ⟨10.1051/jbio/2013015⟩

Article dans une revue istex hal-02598943v1

The archeoviruses.

Mery Pina , Ariane Bize , Patrick Forterre , David Prangishvili

FEMS Microbiology Reviews, 2011, 35 (6), pp.1035-54. ⟨10.1111/j.1574-6976.2011.00280.x⟩

Article dans une revue hal-00630550v1

Les virus d'archées : de la morphologie aux nanotechnologies

A. Bize , G. Sezonov

Biofutur, 2010, 29 (309), pp.39-43

Article dans une revue hal-02593538v1

Les archéovirus

A. Bize , P. Forterre , D. Prangishvili

Virologie, 2010, 14 (2), pp.101-117. ⟨10.1684/vir.2010.0288⟩

Article dans une revue hal-02593536v1

A unique virus release mechanism in the Archaea.

Ariane Bize , Erik A Karlsson , Karin Ekefjärd , Tessa E F Quax , Mery Pina et al.

Proceedings of the National Academy of Sciences of the United States of America, 2009, epub ahead of print. ⟨10.1073/pnas.0901238106⟩

Article dans une revue hal-00401136v1

Viruses in acidic geothermal environments of the Kamchatka Peninsula.

Ariane Bize , Xu Peng , Maria Prokofeva , Kirsty Maclellan , Soizick Lucas et al.

Research in Microbiology, 2008, 159 (5), pp.358-66. ⟨10.1016/j.resmic.2008.04.009⟩

Article dans une revue istex hal-00326293v1
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Inhibition of anaerobic digestion of urban sewage sludge by sodium propionate: biogas production and microbial community shift in continuous reactors

Joel Awinzure Agumah , Xiaojun Liu , Laura André , Sophie Thibault , Camille Auneau et al.

18th IWA World Conference On Anaerobic Digestion, Jun 2024, Istanbul, Turkey. 18th IWA World Conference on Anaerobic Digestion CONFERENCE PROCEEDINGS, 2024

Poster de conférence hal-04647882v1
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Combining the analysis of omics data and bioprocess data in environmental biorefineries

Emilie Fernandez , Ariane Bize , Elie Desmond-Le Quéméner , Virginie Rossard , Eric Latrille

JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France.

Poster de conférence hal-04664121v1
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DeepOmics, a Digital Environnemental Engineering Platform for Omics data

Véronique Jamilloux , Ariane Bize , Cédric Midoux , Aurélie Gramusset , Cédric Gil et al.

JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France.

Poster de conférence hal-04619395v1
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Deciphering the effect of propionic acid on anaerobic digestion of sludge: gas production and microbial community structure

Chloé Soulard , Xiaojun Liu , André Pauss , Laura André , Thierry Ribeiro et al.

18th IWA World Conference On Anaerobic Digestion, Jun 2024, Istanbul, Turkey. , 18th IWA World Conference on Anaerobic Digestion CONFERENCE PROCEEDINGS, 2024

Poster de conférence hal-04647849v1
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Design and production of a plug-in tool facilitating the submission of microbial meta-omics data to an international repository

Baptiste Rousseau , Véronique Jamilloux , Thomas Denecker , Hélène Chiapello , Ariane Bize

JOBIM 2023, Jun 2023, Nancy, France.

Poster de conférence hal-04139284v1
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Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Vuong Quoc Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur et al.

ISME18, 18th International Symposium on Microbial Ecology, Aug 2022, Lausanne, Switzerland.

Poster de conférence hal-04359643v1
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Deciphering the effect of propionic acid on anaerobic digestion of sludge: gas production and microbial community structure

Xiaojun Liu , Chloé Soulard , André Pauss , Sabrina Guérin-Rechdaoui , Vincent Rocher et al.

18th International Symposium on Microbial Ecology (ISME18), Aug 2022, Lausanne ( CH), Switzerland

Poster de conférence hal-04482086v1
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Characterization of virus-host dynamics in anaerobic digesters under abiotic stress

Marion Coves , Laurent Mazéas , Olivier Chapleur , Cédric Midoux , Ludwig E Jardillier et al.

Viruses of Microbes, Jul 2022, Braga, Portugal.

Poster de conférence hal-04356367v1
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Microbial community dynamics during the co-digestion of manure and the organic fraction of household waste

Franciele Pereira Camargo , Céline Roose-Amsaleg , Sabrina Guérin-Rechdaoui , Vincent Rocher , Elise Alibert et al.

4th International Conference on Biogas Microbiology (ICBM-4), May 2022, Braga, Portugal

Poster de conférence hal-04486518v1
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Antibiotic resistance genes in sewage sludge submitted to anaerobic digestion

C. Roose-Amsaleg , Romain Causse , Cédric Wolf , Garance Demarquest , Thomas Lehembre et al.

ISME symposium, Aug 2022, Lausanne, Switzerland

Poster de conférence hal-05202715v1
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A bioinformatic pipeline to elucidate the links between viruses and their hosts in microbial communities, applied to viruses in anaerobic digestion processes

Vuong Quoc Hoang Ngo , Cédric Midoux , Mahendra Mariadassou , Valentin Loux , François Enault et al.

JOBIM 2021 (JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques), Jul 2021, Paris, France.

Poster de conférence hal-04359920v1
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Inhibition de la digestion anaérobie : cas de l'acide propionique

Chloé Soulard , Ariane Bize , Sabrina Guérin-Rechdaoui , Celine Roose-Amsaleg

10ème colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Nov 2021, Marseille (Colloque distanciel), France

Poster de conférence hal-04482021v1
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DeepOmics, a Digital Environmental Engineering Platform for meta-omics data

Ariane Bize , Guillaume Perréal , Aurélie Gramusset , Marion Predhumeau , Cédric Midoux et al.

Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM2020), Jun 2020, Montpellier, France.

Poster de conférence hal-04493150v1
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A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste

Cedric Midoux , Franciele Camargo , Olivier Rué , Mahendra Mariadassou , Valentin Loux et al.

JOBIM, Jun 2020, Montpellier, France

Poster de conférence hal-02902758v1
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Mining anaerobic digestion data with Deep-omics, a new digital environmental engineering platform for omics data

Cédric Midoux , Guillaume Perréal , Manon Prédhumeau , Olivier Rué , Yannick Fayolle et al.

AD16 (16th IWA World Conference on Anaerobic Digestion), Jun 2019, Delft, Netherlands

Poster de conférence hal-04361137v1
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Feedback on a c omparative metatranscriptomic analysis

Cedric Midoux , Tiago P. Delforno , Thais Z. Macedo , Gileno V. Lacerda , Olivier Rué et al.

JOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. , 2019, JOBIM 2019

Poster de conférence hal-02735859v1
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Detection of an archaeal-specific viral family, previously thought to infect exclusively hyperthermophiles, in human gut metaviromes

Vuong Quoc Hoang Ngo , Cédric Midoux , Olivier Rué , Mahendra Mariadassou , Violette Da Cunha et al.

Phages in Grenoble, Oct 2019, Grenoble, France.

Poster de conférence hal-04360160v1
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A molecular ecology approach using Stable Isotope Probing and metagenomics to study viruses of methanogens' diversity Context

Vuong Quoc Hoang Ngo , Maximilien Sotomski , Mart Krupovic , François Enault , Olivier Chapleur et al.

Phages in Grenoble, Oct 2019, Grenoble, France

Poster de conférence hal-04360049v1
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Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data

Cedric Midoux , Olivier Rué , Olivier Chapleur , Mahendra Mariadassou , Théodore Bouchez et al.

JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018

Poster de conférence hal-02737257v1

Combination of bioanode and biocathode for the conversion of wastes into biocommodities using microbial electrosynthesis

Arnaud Bridier , Elie Desmond-Le Quéméner , Lenaic Rouillac , Celine Madigou , Elise Blanchet et al.

15. International Symposium on Microbial Ecology ISME 15, Aug 2014, Seoul, South Korea. , 2014, ISME15 - Abstract Book

Poster de conférence hal-02743656v1
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Combination of bioanode and biocathode for the conversion of wastes into biocommodities using microbial electrosynthesis

Arnaud Bridier , Elie Desmond-Le Quéméner , Lenaic Rouillac , Céline Madigou , E. Blanchet et al.

2. European meeting of the International Society for Microbial Electrochemistry and Technology (EU-ISMET 2014), Sep 2014, Alcala de Henares, Spain. EU-ISMET 2014 Book of Abstracts, 2014, EU-ISMET 2014 Book of Abstracts

Poster de conférence hal-01595413v1

Converting biowaste into biomolecules using saline and non-saline microbial electrolyzers

Louise Rigaud , Chrystelle Bureau , Ariane Bize , Théodore Bouchez

Microbes, 19e Congrès National de la SFM, Société Française de Microbiologie (SFM), Oct 2024, Lille, France

Communication dans un congrès hal-04926148v1
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Inhibition de la digestion anaérobie des boues d'épuration urbaines par le propionate de sodium : production de biogaz et évolution de la communauté microbienne dans des réacteurs semi-continus

Joel Awinzure Agumah , Xiaojun Liu , Chloé Soulard , Laura André , André Pauss et al.

19e Congrès de la Société Française du Génie des Procédés (SFGP 2024), Société Française du Génie des Procédés, Oct 2024, Deauville, France

Communication dans un congrès hal-05306554v1

Creating a comprehensive framework for leveraging meta-omic data in environmental biotechnology processes

Emilie Fernandez , Ariane Bize , Elie Desmond-Le Quéméner , Virginie Rossard , Eric Latrille

Séminaire résidentiel INRAE Semantic Linked Data, CATI DIISCICO; CATI CODEX; réseau In-OVIVE, Oct 2023, Cap d'Agde, France

Communication dans un congrès hal-04664508v1
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Diversity of novel viruses infecting methanogenic archaea, discovered through coupling of stable isotope probing and metagenomics

Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur et al.

Phages in Paris, Phages.fr, Oct 2022, Paris, France

Communication dans un congrès hal-04357012v1
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Characterization of virus-host dynamics in anaerobic digesters under abiotic stress

Marion Coves , Laurent Mazéas , Olivier Chapleur , Cédric Midoux , Ludwig E Jardillier et al.

17e Congrès National de la Société Française de Microbiologie, Société Française de Microbiologie, Oct 2022, Montpellier, France

Communication dans un congrès hal-04356630v1
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Co-digestion anaérobie de boues urbaines : effets du fumier et de la fraction organique des déchets ménagers employés comme cosubstrats, sur la composition des communautés microbienne

Ariane Bize , Sabrina Guérin-Rechdaoui , Franciele Pereira Camargo , Vincent Rocher , Elise Alibert et al.

25ème édition des Journées Information Eaux (JIE), Oct 2022, Poitiera, France

Communication dans un congrès hal-04493115v1
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Mining anaerobic digestion data with DeepOmics and Easy16S, user-friendly tools for environmental engineering meta-omics data

Ariane Bize

ICBM-4 ( 4th International Conference on Biogas Microbiology), May 2022, Braga, Portugal

Communication dans un congrès hal-04362416v1
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Exploration de la diversité des virus d'archées méthanogènes dans les procédés de digestion anaérobie, par des approches isotopiques et métagénomiques

Ariane Bize

10ème Colloque de l'Association Francophone d'Ecologie Microbienne, AFEM (Association Francophone d'Ecologie Microbienne), Nov 2021, Marseille, France

Communication dans un congrès hal-04359744v1
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Utiliser des données méta-omiques pour piloter les procédés de méthanisation : le projet DeepOmics Ariane Bize

Ariane Bize

JRI Biogaz méthanisation 2020 (journées recherche innovation), CTBM (ATEE), Sep 2020, Toulouse, France

Communication dans un congrès hal-04362402v1
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K-mer approaches provide valuable insight into mobilome evolution in the domain Archaea

Ariane Bize , Violette Da Cunha , Cédric Midoux , Sophie Schbath , Patrick Forterre

Viruses of Microbes 2018, Jul 2018, Wroclaw, Poland

Communication dans un congrès hal-04360247v1
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K-mer approaches provide valuable insight into mobilome evolution in the domain Archaea

Ariane Bize , Violette Da Cunha , Cédric Midoux , Sophie Schbath , Patrick Forterre

Phages in Bordeaux, Phages.fr, Sep 2018, Bordeaux, France

Communication dans un congrès hal-04360213v1
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Degradation potential of S-metolachlor in an artificial wetland ecosystem: microcosm assessment

Carolina Hoyos-Hernandez , Ariane Bize , T. Bouchez , Laurent Mazéas , Elodie Passeport et al.

Meeting of SWS/WETPOL and Biogeochemistry symposium, Jul 2011, Prague, Czech Republic. 8 p

Communication dans un congrès hal-01111052v1

From cow and termite to lab-scale anaerobic processes? Two experiments with biomimetism

Jean-Jacques Godon , Renaud Escudié , Audrey Battimelli , Michel Torrijos , Ariane Bize et al.

IWA 2012 World Water Congress & Exhibition, International Water Association (IWA). INT., Sep 2012, Busan, South Korea

Communication dans un congrès hal-01204492v1

How to get 500 million years of experience in anaerobic digestion: animal mimicking

Jean-Jacques Godon , Laure Arcemisbehere , Renaud Escudie , Ariane Bize , Alain Guillot et al.

12th World Congress on anaerobic digestion, Oct 2010, Guadalajara, Mexico

Communication dans un congrès hal-01204250v1