Benjamin Bardiaux

63
Documents
Affiliation actuelle
  • Systèmes transmembranaires bactériens - Bacterial transmembrane systems

Publications

Publications

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HTRF-based identification of small molecules targeting SARS-CoV-2 E protein interaction with ZO-1 PDZ2

Flavio Alvarez , Florence Larrous , Ariel Mechaly , Benjamin Bardiaux , Quentin Goor et al.

Scientific Reports, In press, Online ahead of print. ⟨10.1038/s41598-025-31755-y⟩

Article dans une revue hal-05449164v1
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Antibiotics and phages drive region-specific diversity of OmpK36 in <i>Klebsiella pneumoniae</i>

Guilhem Royer , Raphaël Laurenceau , Nicolas Cabanel , Benjamin Bardiaux , Karol Melissa Cerdas-Mejías et al.

mBio, 2025, 16 (9), pp.e0134325. ⟨10.1128/mbio.01343-25⟩

Article dans une revue hal-05235939v1
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Ton motor conformational switch and peptidoglycan role in bacterial nutrient uptake

Maximilian Zinke , Maylis Lejeune , Ariel Mechaly , Benjamin Bardiaux , Ivo Gomperts Boneca et al.

Nature Communications, 2024, 15, pp.331. ⟨10.1038/s41467-023-44606-z⟩

Article dans une revue hal-04378918v2
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Atomic resolution structure of full-length human insulin fibrils

Saba Suladze , Riddhiman Sarkar , Natalia Rodina , Krister Bokvist , Manuel Krewinkel et al.

Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (23), pp.e2401458121. ⟨10.1073/pnas.2401458121⟩

Article dans une revue hal-04594552v1
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Restraint validation of biomolecular structures determined by NMR in the Protein Data Bank

Kumaran Baskaran , Eliza Ploskon , Roberto Tejero , Masashi Yokochi , Deborah Harrus et al.

Structure, 2024, 32 (6), pp.824-837.e1. ⟨10.1016/j.str.2024.02.011⟩

Article dans une revue hal-04594578v2
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Dynamic interplay between a TonB-dependent heme transporter and a TonB protein in a membrane environment

Kamolrat Somboon , Oliver Melling , Maylis Lejeune , Glaucia M S Pinheiro , Annick Paquelin et al.

mBio, 2024, 15 (12), pp.e0178124. ⟨10.1128/mbio.01781-24⟩

Article dans une revue hal-04760782v1

NMR resonance assignment of the cell death execution domain BELL2 from multicellular bacterial signalosomes

Loic Delcourte , Corinne Sanchez , Estelle Morvan , Mélanie Berbon , Axelle Grélard et al.

Biomolecular NMR Assignments, 2024, 18 (2), pp.159-164. ⟨10.1007/s12104-024-10183-5⟩

Article dans une revue hal-05392067v1
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A Poly‐Proline II Helix in YadA from Yersinia enterocolitica serotype O:9 Facilitates Heparin Binding through Electrostatic Interactions

Ina Meuskens , Per Eugen Kristiansen , Benjamin Bardiaux , Vladimir Rosenov Koynarev , Daniel Hatlem et al.

FEBS Journal, 2024, 291 (4), pp.761-777. ⟨10.1111/febs.17001⟩

Article dans une revue hal-04290267v1
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Biophysical insights into sugar-dependent medium acidification promoting YfaL protein-mediated Escherichia coli self-aggregation, biofilm formation and acid stress resistance

Yankel Chekli , Stanislas Thiriet-Rupert , Céline Caillet , Fabienne Quilès , Hélène Le Cordier et al.

Nanoscale, 2024, 16, pp.17567. ⟨10.1039/D4NR01884B⟩

Article dans une revue hal-04693551v2
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Membrane platform protein PulF of the Klebsiella type II secretion system forms a trimeric ion channel essential for endopilus assembly and protein secretion

Ingrid Guilvout , Firdaus Samsudin , Roland G Huber , Peter J Bond , Benjamin Bardiaux et al.

mBio, 2024, 15 (1), pp.e0142323. ⟨10.1128/mbio.01423-23⟩

Article dans une revue hal-04331781v1
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Der starre Kern und die flexible Oberfläche von Amyloidfibrillen – Magic‐Angle‐Spinning NMR Spektroskopie von aromatischen Resten

Lea Marie Becker , Mélanie Berbon , Alicia Vallet , Axelle Grélard , Estelle Morvan et al.

Angewandte Chemie, 2023, 135 (19), pp.e202219314. ⟨10.1002/ange.202219314⟩

Article dans une revue hal-05514199v1
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Structure and dynamic association of an assembly platform subcomplex of the bacterial type II secretion system

Régine Dazzoni , Yuanyuan Li , Aracelys López-Castilla , Sébastien Brier , Ariel Mechaly et al. Article dans une revue pasteur-03932612v2
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The Mla system of diderm Firmicute Veillonella parvula reveals an ancestral transenvelope bridge for phospholipid trafficking

Kyrie P Grasekamp , Basile Beaud Benyahia , Najwa Taib , Bianca Audrain , Benjamin Bardiaux et al.

Nature Communications, 2023, 14 (1), pp.7642. ⟨10.1038/s41467-023-43411-y⟩

Article dans une revue hal-04301455v1
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The rigid core and flexible surface of amyloid fibrils probed by Magic‐Angle Spinning NMR of aromatic residues

Lea Marie Becker , Mélanie Berbon , Alicia Vallet , Axelle Grelard , Estelle Morvan et al.

Angewandte Chemie International Edition, 2023, ⟨10.1002/anie.202219314⟩

Article dans une revue pasteur-04034318v1
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Characterization of the Interaction Domains between the Phosphoprotein and the Nucleoprotein of Human Metapneumovirus

Hortense Decool , Benjamin Bardiaux , Luis Checa Ruano , Olivier Sperandio , Jenna Fix et al.

Journal of Virology, 2022, 96 (2), pp.e0090921. ⟨10.1128/JVI.00909-21⟩

Article dans une revue hal-03579501v2
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Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution

Guillaume Bouvier , Benjamin Bardiaux , Riccardo Pellarin , Chiara Rapisarda , Michael Nilges

Biomolecules, 2022, 12 (9), pp.1290. ⟨10.3390/biom12091290⟩

Article dans une revue pasteur-03840876v1
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Mechanism of threonine ADP-ribosylation of F-actin by a Tc toxin

Alexander Belyy , Florian Lindemann , Daniel Roderer , Johanna Funk , Benjamin Bardiaux et al.

Nature Communications, 2022, 13, pp.4202. ⟨10.1038/s41467-022-31836-w⟩

Article dans une revue pasteur-03856050v1
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Secondary structure and 1H, 15 N & 13C resonance assignments of the periplasmic domain of OutG, major pseudopilin from Dickeya dadantii type II secretion system

Theis Jacobsen , Régine Dazzoni , Melvin Renault , Benjamin Bardiaux , Michael Nilges et al.

Biomolecular NMR Assignments, 2022, 16 (2), pp.231-236. ⟨10.1007/s12104-022-10085-4⟩

Article dans une revue hal-03836613v1
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Structural and molecular basis of cross-seeding barriers in amyloids

Asen Daskalov , Denis Martinez , Virginie Coustou , Nadia El Mammeri , Mélanie Berbon et al.

Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (1), pp.e2014085118. ⟨10.1073/pnas.2014085118⟩

Article dans une revue pasteur-03106845v1
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Structures of Pathological and Functional Amyloids and Prions, a Solid-State NMR Perspective

Asen Daskalov , Nadia El Mammeri , Alons Lends , Jayakrishna Shenoy , Gaelle Lamon et al.

Frontiers in Molecular Neuroscience, 2021, 14, pp.670513. ⟨10.3389/fnmol.2021.670513⟩

Article dans une revue pasteur-03379976v1
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Computational and biochemical analysis of type IV pilus dynamics and stability

Yasaman Karami , Aracelys López-Castilla , Andrea Ori , Jenny-Lee Thomassin , Benjamin Bardiaux et al.

Structure, 2021, 29, pp.1-13. ⟨10.1016/j.str.2021.07.008⟩

Article dans une revue pasteur-03380000v2
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1H, 15 N and 13C resonance assignments of the C-terminal domain of PulL, a component of the Klebsiella oxytoca type II secretion system

Régine Dazzoni , Aracelys López-Castilla , Florence Cordier , Benjamin Bardiaux , Michael Nilges et al.

Biomolecular NMR Assignments, 2021, 15 (2), ⟨10.1007/s12104-021-10045-4⟩

Article dans une revue hal-03331217v1
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Host-Pathogen Adhesion as the Basis of Innovative Diagnostics for Emerging Pathogens

Alex van Belkum , Carina Almeida , Benjamin Bardiaux , Sarah V Barrass , Sarah J Butcher et al.

Diagnostics, 2021, 11 (7), pp.1259. ⟨10.3390/diagnostics11071259⟩

Article dans une revue hal-03331223v1
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A Structural and Dynamic Analysis of the Partially Disordered Polymerase-Binding Domain in RSV Phosphoprotein

Christophe Cardone , Claire-Marie Caseau , Benjamin Bardiaux , Aurélien Thureaux , Marie Gallou et al.

Biomolecules, 2021, 11 (8), ⟨10.3390/biom11081225⟩

Article dans une revue hal-03321817v1
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Quantitative Structural Interpretation of Protein Crosslinks

Isaac Filella-Merce , Benjamin Bardiaux , Michael Nilges , Guillaume Bouvier

Structure, 2020, 28 (1), pp.75-82. ⟨10.1016/j.str.2019.10.018⟩

Article dans une revue pasteur-02369173v1
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ARIAweb: a server for automated NMR structure calculation

Fabrice Allain , Fabien Mareuil , Hervé Ménager , Michael Nilges , Benjamin Bardiaux

Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa362⟩

Article dans une revue pasteur-02569631v1
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Aβ(1-42) tetramer and octamer structures reveal edge conductivity pores as a mechanism for membrane damage

Sonia Ciudad , Eduard Puig , Thomas Botzanowski , Moeen Meigooni , Andres Arango et al.

Nature Communications, 2020, 11 (1), pp.3014. ⟨10.1038/s41467-020-16566-1⟩

Article dans une revue pasteur-02874153v1
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Minimal NMR distance information for rigidity of protein graphs

Carlile Lavor , Leo Liberti , Bruce Donald , Bradley Worley , Benjamin Bardiaux et al.

Discrete Applied Mathematics, 2019, 256, pp.91-104. ⟨10.1016/j.dam.2018.03.071⟩

Article dans une revue hal-01907200v2
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Structure and function of minor pilins of type IV pili

Theis Jacobsen , Benjamin Bardiaux , Olivera Francetic , Nadia Izadi-Pruneyre , Michael Nilges

Medical Microbiology and Immunology, 2019, ⟨10.1007/s00430-019-00642-5⟩

Article dans une revue pasteur-02387745v1
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Structure and Assembly of the Enterohemorrhagic Escherichia coli Type 4 Pilus

Benjamin Bardiaux , Gisele Cardoso de Amorim , Areli Luna Rico , Weili Zheng , Ingrid Guilvout et al.

Structure, 2019, 27 (7), pp.1082-1093.e5. ⟨10.1016/j.str.2019.03.021⟩

Article dans une revue hal-02326222v1

Single-site phosphorylation within the His-tag sequence attached to a recombinant protein

Himanshu Singh , Deepshikha Verma , Benjamin Bardiaux

Analytical Biochemistry, 2019, 570, pp.62-64. ⟨10.1016/j.ab.2019.02.001⟩

Article dans une revue pasteur-02329972v1
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Dynamics of a type 2 secretion system pseudopilus unraveled by complementary approaches

Benjamin Bardiaux , Florence Cordier , Sébastien Brier , Aracelys López-Castilla , Nadia Izadi-Pruneyre et al.

Journal of Biomolecular NMR, 2019, 73 (6-7), pp.293-303. ⟨10.1007/s10858-019-00246-4⟩

Article dans une revue hal-02990168v1
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Tuning interval Branch-and-Prune for protein structure determination

Bradley Worley , Florent Delhommel , Florence Cordier , Thérèse Malliavin , Benjamin Bardiaux et al.

Journal of Global Optimization, 2018, 72 (1), pp.109-127. ⟨10.1007/s10898-018-0635-0⟩

Article dans une revue pasteur-01921275v2
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The protofilament architecture of a de novo designed coiled coil-based amyloidogenic peptide

Mônica Santos de Freitas , Raheleh Rezaei Araghi , Enrico Brandenburg , Jork Leiterer , Franziska Emmerling et al.

Journal of Structural Biology, 2018, 203 (3), pp.263-272. ⟨10.1016/j.jsb.2018.05.009⟩

Article dans une revue pasteur-02329917v1
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Sequence-specific DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase

Nelly Morellet , Xianghong Li , Silke Wieninger , Jennifer Taylor , Julien Bischerour et al.

Nucleic Acids Research, 2018, 46 (5), pp.2660-2677. ⟨10.1093/nar/gky044⟩

Article dans une revue hal-02114800v1
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Biogenesis and structure of a type VI secretion baseplate

Yassine Cherrak , Chiara Rapisarda , Riccardo Pellarin , Guillaume Bouvier , Benjamin Bardiaux et al.

Nature Microbiology, 2018, 3 (12), pp.1404-1416. ⟨10.1038/s41564-018-0260-1⟩

Article dans une revue hal-02342924v1
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Structure and dynamics of Helicobacter pylori nickel-chaperone HypA: an integrated approach using NMR spectroscopy, functional assays and computational tools

Chris Spronk , Szymon Żerko , Michał Górka , Wiktor Koźmiński , Benjamin Bardiaux et al.

Journal of Biological Inorganic Chemistry, 2018, 23 (8), pp.1309-1330. ⟨10.1007/s00775-018-1616-y⟩

Article dans une revue pasteur-02329962v1
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Ordering Protein Contact Matrices

Chuan Xu , Guillaume Bouvier , Benjamin Bardiaux , Michael Nilges , Thérèse Malliavin et al.

Computational and Structural Biotechnology Journal, 2018, 16, pp.140 - 156. ⟨10.1016/j.csbj.2018.03.001⟩

Article dans une revue hal-01776351v1
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3D structure determination of amyloid fibrils using solid-state NMR spectroscopy

Antoine Loquet , Nadia El Mammeri , Stanek Jan , Mélanie Berbon , Benjamin Bardiaux et al.

Methods, 2018, 138–139, pp.26-38. ⟨10.1016/j.ymeth.2018.03.014⟩

Article dans une revue hal-01774854v1
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Structure of outer membrane protein G in lipid bilayers

Joren Retel , Andrew J. Nieuwkoop , Matthias Hiller , Victoria A. Higman , Emeline Barbet-Massin et al.

Nature Communications, 2017, 8 (1), pp.Article Number: 2073. ⟨10.1038/s41467-017-02228-2⟩

Article dans une revue hal-01679641v1

Structural Characterization of Whirlin Reveals an Unexpected and Dynamic Supramodule Conformation of Its PDZ Tandem

Florent Delhommel , Florence Cordier , Benjamin Bardiaux , Guillaume Bouvier , Baptiste Colcombet-Cazenave et al.

Structure, 2017, 25 (11), pp.1645-1656.e5. ⟨10.1016/j.str.2017.08.013⟩

Article dans une revue pasteur-02883914v1
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Structure of the calcium dependent type 2 secretion pseudopilus

Aracelys Lopez-Castilla , Jenny-Lee Thomassin , Benjamin Bardiaux , Weili Zheng , Mangayarkarasi Nivaskumar et al.

Nature Microbiology, 2017, ⟨10.1038/s41564-017-0041-2⟩

Article dans une revue pasteur-02283219v1
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Structure determination of helical filaments by solid-state NMR spectroscopy.

Lichun He , Benjamin Bardiaux , Mumdooh Ahmed , Johannes Spehr , Renate König et al.

Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (3), pp.E272-81. ⟨10.1073/pnas.1513119113⟩

Article dans une revue pasteur-01501716v1
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Improved reliability, accuracy and quality in automated NMR structure calculation with ARIA.

Fabien Mareuil , Thérèse E Malliavin , Michael Nilges , Benjamin Bardiaux

Journal of Biomolecular NMR, 2015, Epub. ⟨10.1007/s10858-015-9928-5⟩

Article dans une revue pasteur-01144918v1
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Biogenesis and structure of a Type VI secretion membrane core complex

Eric Durand , van Son Nguyen , Abdelrahim Zoued , Laureen Logger , Gerard Pehau-Arnaudet et al.

Nature, 2015, 523, pp.555-560. ⟨10.1038/nature14667⟩

Article dans une revue hal-01778556v1
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Neisseria meningitidis Type IV Pili Composed of Sequence Invariable Pilins Are Masked by Multisite Glycosylation

Joseph Gault , Mathias Ferber , Silke Machata , Anne-Flore Imhaus , Christian Malosse et al.

PLoS Pathogens, 2015, 11 (9), ⟨10.1371/journal.ppat.1005162⟩

Article dans une revue pasteur-01300944v1
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The chaperone αB-crystallin uses different interfaces to capture an amorphous and an amyloid client.

Andi Mainz , Jirka Peschek , Maria Stavropoulou , Katrin C Back , Benjamin Bardiaux et al.

Nature Structural and Molecular Biology, 2015, pp.898-905. ⟨10.1038/nsmb.3108⟩

Article dans une revue pasteur-01400959v1
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NMR Exchange Format: a unified and open standard for representation of NMR restraint data

Aleksandras Gutmanas , Paul D Adams , Benjamin Bardiaux , Helen M. Berman , David Case et al.

Nature Structural and Molecular Biology, 2015, 22, pp.433-434. ⟨10.1038/nsmb.3041⟩

Article dans une revue hal-01187684v1
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Solid-state NMR Study of the YadA Membrane-Anchor Domain in the Bacterial Outer Membrane

Shakeel A. Shahid , Madhu Nagaraj , Nandini Chauhan , Trent W. Franks , Benjamin Bardiaux et al.

Angewandte Chemie International Edition, 2015, 54 (43), pp.12602 - 12606. ⟨10.1002/anie.201505506⟩

Article dans une revue istex pasteur-01399310v1
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Solid-State NMR Structure Determination from Diagonal-Compensated, Sparsely Nonuniform-Sampled 4D Proton-Proton Restraints

Rasmus Linser , Benjamin Bardiaux , Loren B Andreas , Sven G Hyberts , Vanessa K Morris et al.

Journal of the American Chemical Society, 2014, 136 (31), pp.11002-11010. ⟨10.1021/ja504603g⟩

Article dans une revue hal-01070866v1
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An algorithm to enumerate all possible protein conformations verifying a set of distance constraints

Andrea Cassioli , Benjamin Bardiaux , Guillaume Bouvier , Antonio Mucherino , Rafael Alves et al.

BMC Bioinformatics, 2014, 16 (1), pp.23. ⟨10.1186/s12859-015-0451-1⟩

Article dans une revue pasteur-01120652v1
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Structural insights into serine-rich fimbriae from Gram-positive bacteria.

Stéphanie Ramboarina , James A Garnett , Meixian Zhou , Yuebin Li , Zhixiang Peng et al.

Journal of Biological Chemistry, 2010, 285 (42), pp.32446-57. ⟨10.1074/jbc.M110.128165⟩

Article dans une revue pasteur-01500608v1

3D Structure Determination of the Crh Protein from Highly Ambiguous Solid-State NMR Restraints

Antoine Loquet , Benjamin Bardiaux , Carole Gardiennet , Christophe Blanchet , Marc Baldus et al.

Journal of the American Chemical Society, 2008, 130 (11), pp.3579-3589. ⟨10.1021/ja078014t⟩

Article dans une revue istex hal-04124651v1

Accurate NMR structures through minimization of an extended hybrid energy.

Michael Nilges , Aymeric Bernard , Benjamin Bardiaux , Thérèse Malliavin , Michael Habeck et al.

Structure, 2008, 16 (9), pp.1305-12. ⟨10.1016/j.str.2008.07.008⟩

Article dans une revue pasteur-01570038v1
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Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA.

Benjamin Bardiaux , Aymeric Bernard , Wolfgang Rieping , Michael Habeck , Thérèse E Malliavin et al.

BMC Structural Biology, 2008, 8, pp.30. ⟨10.1186/1472-6807-8-30⟩

Article dans une revue pasteur-01570029v1
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Function of the GspF pilus assembly factor in the Klebsiella type II secretion system

Ingrid Guilvout , Firdaus Samsudin , Roland G Huber , Peter J Bond , Benjamin Bardiaux et al.

Microbial Adhesion and Signal Transduction Gordon Research Conference, Jul 2023, Newport, United States

Poster de conférence pasteur-05279137v1