Bérénice Batut

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Libre accès
88
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Affiliations actuelles
  • Institut Français de Bioinformatique (IFB-core)
  • Plateforme Auvergne Bioinformatique (AuBi)
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Publications

Publications

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Guidance framework to apply best practices in ecological data analysis: lessons learned from building Galaxy-Ecology

Coline Royaux , Jean-Baptiste Mihoub , Marie Jossé , Dominique Pelletier , Olivier Norvez et al.
GigaScience, 2025, 14, pp.giae122. ⟨10.1093/gigascience/giae122⟩
Article dans une revue (article de synthèse) hal-05003055 v1
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Establishing the ELIXIR Microbiome Community

Robert D Finn , Bachir Balech , Josephine Burgin , Physilia Chua , Erwan Corre et al.
F1000Research, 2024, 13, pp.50. ⟨10.12688/f1000research.144515.1⟩
Article dans une revue (article de synthèse) hal-04796156 v1
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The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

Linelle Ann L Abueg , Enis Afgan , Olivier Allart , Ahmed Awan , Wendi Bacon et al.
Nucleic Acids Research, 2024, 52 (W1), pp.W83-W94. ⟨10.1093/nar/gkae410⟩
Article dans une revue hal-04645009 v1
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Integrative meta-omics in Galaxy and beyond

Valerie C Schiml , Francesco Delogu , Praveen Kumar , Benoit Kunath , Bérénice Batut et al.
Environmental Microbiome, 2023, 18 (1), pp.56. ⟨10.1186/s40793-023-00514-9⟩
Article dans une revue hal-04626370 v1
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The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond

Simon Bray , John Chilton , Matthias Bernt , Nicola Soranzo , Marius van den Beek et al.
Genome Research, 2023, 33 (2), pp.261-268. ⟨10.1101/gr.276963.122⟩
Article dans une revue hal-04645001 v1
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Galaxy Training: A powerful framework for teaching!

Saskia Hiltemann , Helena Rasche , Simon Gladman , Hans-Rudolf Hotz , Delphine Larivière et al.
PLoS Computational Biology, 2023, 19 (1), pp.e1010752. ⟨10.1371/journal.pcbi.1010752⟩
Article dans une revue hal-04069041 v1

An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond

Jason Williams , Rochelle Tractenberg , Bérénice Batut , Erin Becker , Anne Brown et al.
PLoS ONE, 2023, 18 (11), pp.e0293879. ⟨10.1371/journal.pone.0293879⟩
Article dans une revue hal-04644978 v1

Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine

Omar Mossad , Bérénice Batut , Bahtiyar Yilmaz , Nikolaos Dokalis , Charlotte Mezö et al.
Nature Neuroscience, 2022, 25 (3), pp.295-305. ⟨10.1038/s41593-022-01027-3⟩
Article dans une revue hal-04645004 v1

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework

Subina Mehta , Marie Crane , Emma Leith , Bérénice Batut , Saskia Hiltemann et al.
F1000Research, 2021, 10, pp.103. ⟨10.12688/f1000research.28608.2⟩
Article dans une revue hal-04645022 v1

Fostering accessible online education using Galaxy as an e-learning platform

Beatriz Serrano-Solano , Melanie Föll , Cristóbal Gallardo-Alba , Anika Erxleben , Helena Rasche et al.
PLoS Computational Biology, 2021, 17 (5), pp.e1008923. ⟨10.1371/journal.pcbi.1008923⟩
Article dans une revue hal-04645019 v1
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The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR

Daniel Wibberg , Bérénice Batut , Peter Belmann , Jochen Blom , Frank Oliver Glöckner et al.
F1000Research, 2020, 8, pp.1877. ⟨10.12688/f1000research.20244.2⟩
Article dans une revue hal-04645046 v1
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A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

Mehmet Tekman , Bérénice Batut , Alexander Ostrovsky , Christophe Antoniewski , Dave Clements et al.
GigaScience, 2020, 9 (10), ⟨10.1093/gigascience/giaa102⟩
Article dans une revue hal-04187533 v1

Ten simple rules for making training materials FAIR

Leyla Garcia , Bérénice Batut , Melissa Burke , Mateusz Kuzak , Fotis Psomopoulos et al.
PLoS Computational Biology, 2020, 16 (5), pp.e1007854. ⟨10.1371/journal.pcbi.1007854⟩
Article dans une revue hal-04645027 v1

Using the Galaxy Training Network tutorial library for bioinformatics training programs

Dave Clements , Saskia Hiltemann , Bérénice Batut , Helena Rasche , Mohammad Heydarian et al.
Journal of Biomolecular Techniques, 2020, 31 (Suppl), pp.1
Article dans une revue hal-04863936 v1
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Genome Evolution: Mutation Is the Main Driver of Genome Size in Prokaryotes

Gabriel A.B. Marais , Bérénice Batut , Vincent Daubin
Current Biology, 2020, 30 (19), pp.R1083-R1085. ⟨10.1016/j.cub.2020.07.093⟩
Article dans une revue hal-03066151 v1

The RNA workbench 2.0: next generation RNA data analysis

Jörg Fallmann , Pavankumar Videm , Andrea Bagnacani , Bérénice Batut , Maria Doyle et al.
Nucleic Acids Research, 2019, 47 (W1), pp.W511-W515. ⟨10.1093/nar/gkz353⟩
Article dans une revue hal-04645055 v1
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

Enis Afgan , Dannon Baker , Bérénice Batut , Marius van den Beek , Dave Bouvier et al.
Nucleic Acids Research, 2018, 46 (W1), pp.W537-W544. ⟨10.1093/nar/gky379⟩
Article dans une revue hal-04645092 v1

Community-Driven Data Analysis Training for Biology

Bérénice Batut , Saskia Hiltemann , Andrea Bagnacani , Dannon Baker , Vivek Bhardwaj et al.
Cell Systems, 2018, 6 (6), pp.752-758.e1. ⟨10.1016/j.cels.2018.05.012⟩
Article dans une revue hal-04863943 v1
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ASaiM: a Galaxy-based framework to analyze microbiota data

Bérénice Batut , Kevin Gravouil , Clemence Defois , Saskia Hiltemann , Jean-François Brugère et al.
GigaScience, 2018, 7 (6), pp.1-7. ⟨10.1093/gigascience/giy057⟩
Article dans une revue hal-01990448 v1

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy

Björn Grüning , Jörg Fallmann , Dilmurat Yusuf , Sebastian Will , Anika Erxleben et al.
Nucleic Acids Research, 2017, 45 (W1), pp.W560-W566. ⟨10.1093/nar/gkx409⟩
Article dans une revue hal-04645102 v1

Four simple recommendations to encourage best practices in research software

Rafael Jiménez , Mateusz Kuzak , Monther Alhamdoosh , Michelle Barker , Bérénice Batut et al.
F1000Research, 2017, 6, pp.876. ⟨10.12688/f1000research.11407.1⟩
Article dans une revue hal-04645108 v1
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Environmental Pollutant Benzo[a]Pyrene Impacts the Volatile Metabolome and Transcriptome of the Human Gut Microbiota

Clémence Defois , Jérémy Ratel , Sylvain Denis , Bérénice Batut , Réjane Beugnot et al.
Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01562⟩
Article dans une revue hal-01658582 v1

ENASearch: A Python library for interacting with ENA's API

Bérénice Batut , Björn Grüning
Journal of Open Source Software, 2017, 2 (18), pp.418. ⟨10.21105/joss.00418⟩
Article dans une revue hal-04645128 v1

Reductive genome evolution at both ends of bacterial population size spectrum

Bérénice Batut , Carole Knibbe , Gabriel Marais , Vincent Daubin
Nature Reviews Microbiology, 2014, 12 (12), pp.841-850. ⟨10.1038/nrmicro3331⟩
Article dans une revue hal-01092392 v1
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In silico experimental evolution: a tool to test evolutionary scenarios

Bérénice Batut , David P. Parsons , Stephan Fischer , Guillaume Beslon , Carole Knibbe
BMC Bioinformatics, 2013, 14 (Suppl 15), pp.S11
Article dans une revue hal-00873232 v1
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microGalaxy: A gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data

Engy Nasr , Pierre Amato , Anshu Bhardwaj , Daniel Blankenberg , Daniela Brites et al.
2024
Pré-publication, Document de travail hal-04863955 v1
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How to improve the annotation of Galaxy resources? Outcomes of an online hackathon for improving the annotation of Galaxy resources for microbial data resources

Bérénice Batut , Matthias Bernt , Mina Hojat Ansari , Matúš Kalaš , Paul Klemm et al.
2024
Pré-publication, Document de travail hal-04626280 v1
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PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking

Engy Nasr , Anna Henger , Björn Grüning , Paul Zierep , Bérénice Batut
2024
Pré-publication, Document de travail hal-04638176 v1
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Clouds influence the functioning of airborne microorganisms

Raphaëlle Péguilhan , Florent Rossi , Muriel Joly , Engy Nasr , Bérénice Batut et al.
2024
Pré-publication, Document de travail hal-04863956 v1
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Guidance framework to apply good practices in ecological data analysis: Lessons learned from building Galaxy-Ecology

Coline Royaux , Jean-Baptiste Mihoub , Marie Jossé , Dominique Pelletier , Olivier Norvez et al.
2024
Pré-publication, Document de travail hal-04639601 v1
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How to increase the findability, visibility, and impact of Galaxy tools for your scientific community

Paul Zierep , Bérénice Batut , Matúš Kalaš , Tunc Kayikcioglu , Engy Nasr et al.
2024
Pré-publication, Document de travail hal-04626296 v1

Optimizing Short-format Training: an International Consensus on Effective, Inclusive, and Career-spanning Professional Development in the Life Sciences and Beyond

Jason Williams , Rochelle Tractenberg , Bérénice Batut , Erin Becker , Anne Brown et al.
2024
Pré-publication, Document de travail hal-04645151 v1
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Clouds, oases for airborne microbes – Differential metagenomics/ metatranscriptomics analyses of cloudy and clear atmospheric situations

Raphaëlle Péguilhan , Florent Rossi , Muriel Joly , Engy Nasr , Bérénice Batut et al.
2024
Pré-publication, Document de travail hal-04626301 v1
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Exploring the landscape of the genomic wastewater surveillance ecosystem: a roadmap towards standardization

Fotis Psomopoulos , Konstantinos Kyritsis , Ivan Topolsky , Bérénice Batut , Amy Heather Fitzpatrick et al.
2024
Pré-publication, Document de travail hal-04626360 v1

Empowering the community with notebooks for bespoke microbiome analyses

Alexander Rogers , Bérénice Batut , Virginie Grosboillot , Martin Beracochea
2024
Pré-publication, Document de travail hal-04645147 v1

Galaxy Training: A Powerful Framework for Teaching!

Saskia Hiltemann , Helena Rasche , Simon Gladman , Hans-Rudolf Hotz , Delphine Larivière et al.
2022
Pré-publication, Document de travail hal-04863959 v1

Planemo: a command-line toolkit for developing, deploying, and executing scientific data analyses

Simon Bray , Matthias Bernt , Nicola Soranzo , Marius van den Beek , Bérénice Batut et al.
2022
Pré-publication, Document de travail hal-04645155 v1

A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework

Mehmet Tekman , Bérénice Batut , Alexander Ostrovsky , Christophe Antoniewski , Dave Clements et al.
2020
Pré-publication, Document de travail hal-04863963 v1
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Community-Driven Data Analysis Training for Biology

Bérénice Batut , Saskia Hiltemann , Andrea Bagnacani , Dannon Baker , Vivek Bhardwaj et al.
2018
Pré-publication, Document de travail pasteur-02613129 v1
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Bioconda: A sustainable and comprehensive software distribution for the life sciences

Björn Grüning , Ryan Dale , Andreas Sjödin , Brad Chapman , Jillian Rowe et al.
2017
Pré-publication, Document de travail hal-04863967 v1

ASaiM: a Galaxy-based framework to analyze raw shotgun data from microbiota

Bérénice Batut , Kévin Gravouil , Clémence Defois , Saskia Hiltemann , Jean-François Brugère et al.
2017
Pré-publication, Document de travail hal-04863972 v1
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RNA-Seq Data Analysis in Galaxy

Bérénice Batut , Marius van den Beek , Maria Doyle , Nicola Soranzo
RNA Bioinformatics, 2284, Springer US, pp.367-392, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1307-8_20⟩
Chapitre d'ouvrage hal-04645142 v1
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Galaxy France: an example of a national UseGalaxy server

Clea Siguret , Thomas Chaussepied , Romane Libouban , Eva Mercier , Julien Seiler et al.
GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. pp.1-15, ⟨10.7490/f1000research.1119767.1⟩
Communication dans un congrès hal-04644627 v1
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Galaxy CoDex for finding tools, workflows, and training

Bérénice Batut , Wendi Bacon , Paul Zierep , Matthias Bernt , Nicola Soranzo et al.
GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. ⟨10.7490/f1000research.1119764.1⟩
Communication dans un congrès hal-04644966 v1
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PathoGFAIR: collection of Galaxy FAIR workflows for pathogen detection and samples comparison

Engy Nasr , Anna Henger , Bjoern Gruening , Paul Zierep , Bérénice Batut
GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. ⟨10.7490/f1000research.1119769.1⟩
Communication dans un congrès hal-04644577 v1
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Developing Galaxy as part of an international network

Bérénice Batut
ELIXIR All Hands Meeting 2023, Jun 2023, Dublin (IE), Ireland. ⟨10.7490/f1000research.1119513.1⟩
Communication dans un congrès hal-04761812 v1
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Open seeds by OLS: A virtual mentoring & training program for open science ambassadors

Pradeep Eranti , Yochannah Yehudi , Sara El-Gebali , Bérénice Batut
Bioinformatics Open Source Conference, Jul 2024, Lyon, France. ⟨10.7490/f1000research.1119659.1⟩
Communication dans un congrès hal-04760113 v1
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ASaiM - From a local project to a global effort to support microbiome data analysis.

Bérénice Batut
Holistic Bioinformatic Approaches used in Microbiome Research - BVCN, Jun 2021, Online, United States
Communication dans un congrès hal-04763640 v1
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Empowering usable, and comprehensive bioinformatics training

Bérénice Batut
ISMB 2020 - 28th Intelligent Systems for Molecular Biology Conference, Jul 2020, Montreal (Virtual event), Canada
Communication dans un congrès hal-04763510 v1

Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops

Teresa Müller , Bérénice Batut
2019 Galaxy Community Conference (GCC2019), Jul 2019, Freiburg, Germany
Communication dans un congrès hal-04763650 v1

Single-cell RNA Analysis in Galaxy on 10X Datasets

Mehmet Tekman , Bérénice Batut , Björn Grüning
2019 Galaxy Community Conference (GCC2019), Jul 2019, Freiburg, Germany
Communication dans un congrès hal-04763654 v1
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Galaxy and training 2019 updates from the Galaxy Training Network

Bérénice Batut , Saskia Hiltemann , Helena Rasche , Subina Mehta , Pratik D Jagtap et al.
GCC2019 - 2019 Galaxy Community Conference, Jul 2019, Freiburg, Germany
Communication dans un congrès hal-04761997 v1

Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy

Pratik D Jagtap , Subina Mehta , Praveen Kumar , Ray Sajulga , Caleb Easterly et al.
2019 Galaxy Community Conference (GCC2019), Jul 2019, Freiburg, Germany
Communication dans un congrès hal-04763648 v1

Community-driven training for biological data analysis with the Galaxy Training Network

Bérénice Batut
Galaxy Africa conference, Apr 2018, Cape Town, South Africa
Communication dans un congrès hal-04763513 v1

A fruitful year for the Galaxy Training materials

Bérénice Batut , Saskia Hiltemann , Björn Grüning
Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference (BOSC2018), Jun 2018, Portland, United States
Communication dans un congrès hal-04763669 v1

Building an open, collaborative, online infrastructure for bioinformatics training

Bérénice Batut , Dave Clements , Björn Grüning
Galaxy Community Conference 2017, Jun 2017, Montpellier, France. ⟨10.7490/f1000research.1114447.1⟩
Communication dans un congrès hal-04763025 v1

Tool deployment and sustainability in bioinformatics: Fixed!

Bérénice Batut , Jonas Weber , Rolf Backofen , Björn Grüning
Bioinformatics for Human Health and Disease, Nov 2016, Heidelberg, Germany
Communication dans un congrès hal-04764363 v1

ASaiM: An intuitive and adjustable pipeline to process metatranscriptomic data from intestinal microbiota

Bérénice Batut , Clémence Defois , Céline Ribière , Cyrielle Gasc , Jean-François Brugère et al.
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France
Communication dans un congrès hal-04764365 v1

An alife game to teach evolution of antibiotic resistance

Guillaume Beslon , Bérénice Batut , David P. Parsons , Dominique Schneider , Carole Knibbe
ECAL - 12th European Conference on Artificial Life - 2013, Sep 2013, Taormina, Italy. pp.43-50
Communication dans un congrès hal-00849345 v1

In silico experimental evolution: a tool to test evolutionary scenarios

Bérénice Batut , David P. Parsons , Stephan Fischer , Guillaume Beslon , Carole Knibbe
11th RECOMB - Comparative Genomics 2013, Oct 2013, Villeurbane, France
Communication dans un congrès hal-04764366 v1
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microGalaxy SIG: microbial data analysis resources in Galaxy

Paul Zierep , Engy Nasr , Saim Momin , Pratik D Jagtap , Debjyoti Ghosh et al.
GCB 2024 - German Conference of Bioinformatics 2024, Sep 2024, Bielefeld, Germany
Poster de conférence hal-04763659 v1
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Exploring the richness of the French Galaxy Ecosystem

Bérénice Batut , Gildas Le Corguillé , Yvan Le Bras , Loraine Brillet-Guéguen , Fabien Mareuil et al.
GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. , pp.1-1, 2024, ⟨10.7490/f1000research.1119765.1⟩
Poster de conférence hal-04644779 v1
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microGalaxy SIG: microbial data analysis resources in Galaxy

Paul Zierep , Engy Nasr , Saim Momin , Pratik D Jagtap , Debjyoti Ghosh et al.
GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. ⟨10.7490/f1000research.1119768.1⟩
Poster de conférence hal-04763657 v1
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The ABRomics platform — a One Health Antimicrobial resistance analysis service

Julie Lao , Raphael Tackx , Pierre Marin , Amanda Dieuaide , Thomas Mignon et al.
Journées Ouvertes en Biologie, Informatique, et Mathématiques - 2024, Jun 2024, Toulouse, France
Poster de conférence hal-04618645 v1
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Open seeds by OLS: A mentoring & training program for open science ambassadors

Mallory Freeberg , Fotis Evangelos Psomopoulos , Diana Pilvar , Bérénice Batut
ELIXIR All Hands 2023, Jun 2023, Dublin, Ireland. ⟨10.7490/f1000research.1119509.1⟩
Poster de conférence hal-04761889 v1
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Galaxy training: A powerful framework for teaching!

Helena Rasche , Saskia Hiltemann , Bérénice Batut
ISMB 2023 - 31st Intelligent Systems for Molecular Biology Conference, Jul 2023, Lyon, France. ⟨10.7490/f1000research.1119512.1⟩
Poster de conférence hal-04864072 v1
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Establishing the ELIXIR microbiome community

Bérénice Batut , Eric Pelletier , Robert D. Finn , Katharina Heil
ELIXIR All Hands 2023, Jun 2023, Dublin, Ireland. ⟨10.7490/f1000research.1119511.1⟩
Poster de conférence hal-04761840 v1
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Galaxy Training: A powerful framework for teaching!

Helena Rasche , Saskia Hiltemann , Bérénice Batut
ELIXIR All Hands Meeting 2023, Jun 2023, Dublin, Ireland. ⟨10.7490/f1000research.1119512.1⟩
Poster de conférence hal-04761822 v1

Accessible and scalable pipelines for fast and easy (foodborne) pathogens detection and tracking

Engy Nasr , Anna Henger , Tobias Schindler , Paul Zierep , Björn Grüning et al.
German Conference on Bioinformatics (GCB) 2023, Sep 2023, Hamburg, Germany. ⟨10.7490/f1000research.1119510.1⟩
Poster de conférence hal-04765295 v1
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Accessible and scalable pipelines for fast and easy (foodborne) pathogens detection and tracking

Engy Nasr , Anna Henger , Tobias Schindler , Paul Zierep , Björn Grüning et al.
ELIXIR All Hands 2023, Jun 2023, Dublin, Ireland. ⟨10.7490/f1000research.1119510.1⟩
Poster de conférence hal-04761854 v1

Open seeds by OLS: A mentoring & training program for open science ambassadors

Pradeep Eranti , Sara El-Gebali , Yochannah Yehudi , Bérénice Batut
31st Intelligent Systems for Molecular Biology (ISMB) Conference, Jul 2023, Lyon, France
Poster de conférence hal-04864077 v1

Accessible and scalable pipelines for fast and easy (foodborne) pathogens detection and tracking

Engy Nasr , Anna Henger , Tobias Schindler , Paul Zierep , Björn Grüning et al.
Applied Bioinformatics & Public Health Microbiology, May 2023, Hinxton, United Kingdom. ⟨10.7490/f1000research.1119510.1⟩
Poster de conférence hal-04766230 v1

Accessible and scalable pipelines for fast and easy (foodborne) pathogens detection and tracking

Engy Nasr , Anna Henger , Tobias Schindler , Paul Zierep , Björn Grüning et al.
24th Bioinformatics Open Source Conference (BOSC) 2023, Jul 2023, Lyon, France. ⟨10.7490/f1000research.1119510.1⟩
Poster de conférence hal-04765208 v1
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Galaxy for long read ONT data analysis and public education

Bérénice Batut , Milad Miladi , Saskia Hiltemann , Willem De Koning , Björn Grüning
German Conference on Bioinformatics (GCB) 2019, Sep 2019, Heidelberg, Germany
Poster de conférence hal-04763036 v1

Metaproteomics Powered By Metatranscriptomics:Towards a multi-omic functional microbiome analysis

Pratik D Jagtap , Praveen Kumar , Francesco Delogu , Benoit J Kunath , Sujun Li et al.
American Society for Mass Spectrometry 2029, Jun 2019, Atlanta (Georgia), United States
Poster de conférence hal-04761927 v1
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Galaxy and Training: 2019 updates from the Galaxy Training Network

Bérénice Batut , Saskia Hiltemann , Helena Rasche , Subina Mehta , Pratik D Jagtap et al.
2019 Galaxy Community Conference (GCC2019), Jul 2019, Freiburg, Germany. ⟨10.7490/f1000research.1117108.1⟩
Poster de conférence hal-04761986 v1
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Community-driven training for biological data analysis with the Galaxy training network

Bérénice Batut , Saskia Hiltemann , Björn Grüning
CarpentryCon 2018, May 2018, Dublin, Ireland.
Poster de conférence hal-04763043 v1

A fruitful year for the Galaxy Training materials

Bérénice Batut , Saskia Hiltemann , Björn Grüning
Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference (BOSC2018), Jun 2018, Portland, United States
Poster de conférence hal-04864079 v1
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Building an open, collaborative, online infrastructure for bioinformatics training

Bérénice Batut , Dave Clements , Björn Grüning
German Conference on Bioinformatics (GCB) 2017, Jul 2017, Tübingen, Germany. ⟨10.7490/f1000research.1114881.1⟩
Poster de conférence hal-04763000 v1
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Scaling bioinformatics training: an ELIXIR, GOBLET & Galaxy Training Network collaboration

Bérénice Batut , Björn Grüning , Frederik Coppens , Hans-Rudolf Hotz , Gabriella Rustici et al.
18th Annual Bioinformatics Open Source Conference (BOSC 2017), Jul 2017, Prague, Czech Republic. ⟨10.7490/f1000research.1114489.1⟩
Poster de conférence hal-04763006 v1
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How to analyze raw sequencing data from microbiota? Using ASaiM!

Bérénice Batut , Clémence Defois , Kevin Gravouil , Jean-François Brugère , Éric Peyretaillade et al.
German Conference on Bioinformatics (GCB) 2017, Sep 2017, Tubingen, Germany. ⟨10.7490/f1000research.1114882.1⟩
Poster de conférence hal-04762996 v1
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A Galaxy-based framework to analyze raw sequencing data from microbiota

Bérénice Batut , Clémence Defois , Kevin Gravouil , Jean-François Brugère , Éric Peyretaillade et al.
Galaxy Community Conference 2017, Jun 2017, Montpellier, France. ⟨10.7490/f1000research.1114448.1⟩
Poster de conférence hal-04763022 v1
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Analyze your microbiota sequencing data using a Galaxy-based framework References

Bérénice Batut , Clémence Defois , Kevin Gravouil , Cyrielle Gasc , Thomas Eymard et al.
JOBIM 2016 - Journées Ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France
Poster de conférence hal-04763064 v1

Stratégies de reconstruction de génomes microbiens à partir de métagenomes

Kevin Gravouil , Corentin Hochart , Bérénice Batut , Clémence Defois , Cyrielle Gasc et al.
JOBIM 2016 - Journées Ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France
Poster de conférence hal-04763072 v1

Unexpected genome inflation and streamlining in variable environments

Bérénice Batut , Guillaume Beslon , Carole Knibbe
Journées ouvertes de Biologie Informatique & Mathématiques 2016, Jun 2016, Lyon, France. pp.320-322, 2016
Poster de conférence hal-01375653 v1

Benzo[a]pyrene impacts human gut microbiota volatile metabolome and metatranscriptome

Clémence Defois , Bérénice Batut , Jérémy Ratel , R. Beugnot , Frederic Mercier et al.
10. Joint Symposium INRA-ROWETT, 2016, Clermont Ferrand, France. 2016
Poster de conférence hal-02794365 v1

Simulating evolutionary scenarios to test whether they can induce reductive evolution

Bérénice Batut , Mathilde Dumond , Gabriel Marais , Guillaume Beslon , Carole Knibbe
SMBE 2012 : Society for Molecular Biology and Evolution, Jun 2012, Dublin, Ireland
Poster de conférence hal-00762597 v1