Bérénice Batut
- Institut Français de Bioinformatique (IFB-core)
- Plateforme Auvergne Bioinformatique (AuBi)
Publications
Publications
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RNA-Seq Data Analysis in GalaxyRNA Bioinformatics, 2284, Springer US, pp.367-392, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1307-8_20⟩ |
The microbiology galaxy lab: The effort of the microGalaxy community to build the first community-driven gateway for reproducible and FAIR analysis of microbial data analysisEuropean Galaxy Days, Oct 2025, Freiburg, Germany. ⟨10.7490/f1000research.1120314.1⟩ |
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FAIRyMAGS – Optimising Metagenomics Assembled Genomes building: workflow finalisation, training material development, real data evaluation, and resource allocation tool creationELIXIR All Hands Meeting, 2025, Jun 2025, Thessaloniki, Greece. ⟨10.7490/f1000research.1120217.1⟩ |
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ATELIER - Dépôt et curation de données - Communauté Biologie et Santé (plateforme de bioanalyses Galaxy)Printemps de la donnée 2025, Université Clermont-Auvergne, May 2025, Clermont-Ferrand, France |
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ABRomics : Une plateforme basée sur Galaxy pour la recherche sur la résistance aux antibiotiques et la santé publiqueJournée d’animation annuelle de la plateforme AuBi 2024, Plateforme Auvergne Bioinformatique (AuBi), Dec 2024, Aubière / Clermont-Ferrand, France |
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Misconceptions about Galaxy debunked by the (French) Galaxy CommunityJOBIM 2024 - Journées Ouvertes Biologie Informatique Mathématiques, Jun 2024, TOULOUSE, France. pp.1-28 |
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Galaxy France: an example of a national UseGalaxy serverGCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. pp.1-15, ⟨10.7490/f1000research.1119767.1⟩ |
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Galaxy CoDex for finding tools, workflows, and trainingGCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. ⟨10.7490/f1000research.1119764.1⟩ |
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PathoGFAIR: collection of Galaxy FAIR workflows for pathogen detection and samples comparisonGCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. ⟨10.7490/f1000research.1119769.1⟩ |
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Developing Galaxy as part of an international networkELIXIR All Hands Meeting 2023, Jun 2023, Dublin (IE), Ireland. ⟨10.7490/f1000research.1119513.1⟩ |
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Open seeds by OLS: A virtual mentoring & training program for open science ambassadorsBioinformatics Open Source Conference, Jul 2024, Lyon, France. ⟨10.7490/f1000research.1119659.1⟩ |
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ASaiM - From a local project to a global effort to support microbiome data analysis.Holistic Bioinformatic Approaches used in Microbiome Research - BVCN, Jun 2021, Online, United States |
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Empowering usable, and comprehensive bioinformatics trainingISMB 2020 - 28th Intelligent Systems for Molecular Biology Conference, Jul 2020, Montreal (Virtual event), Canada |
Single-cell RNA Analysis in Galaxy on 10X Datasets2019 Galaxy Community Conference (GCC2019), Jul 2019, Freiburg, Germany |
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Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy2019 Galaxy Community Conference (GCC2019), Jul 2019, Freiburg, Germany |
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Galaxy and training 2019 updates from the Galaxy Training NetworkGCC2019 - 2019 Galaxy Community Conference, Jul 2019, Freiburg, Germany |
Street Science Community: make science tangible & accessible by bringing it to the “street” with open science workshops2019 Galaxy Community Conference (GCC2019), Jul 2019, Freiburg, Germany |
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Community-driven training for biological data analysis with the Galaxy Training NetworkGalaxy Africa conference, Apr 2018, Cape Town, South Africa |
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A fruitful year for the Galaxy Training materialsGalaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference (BOSC2018), Jun 2018, Portland, United States |
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Building an open, collaborative, online infrastructure for bioinformatics trainingGalaxy Community Conference 2017, Jun 2017, Montpellier, France. ⟨10.7490/f1000research.1114447.1⟩ |
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Tool deployment and sustainability in bioinformatics: Fixed!Bioinformatics for Human Health and Disease, Nov 2016, Heidelberg, Germany |
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ASaiM: An intuitive and adjustable pipeline to process metatranscriptomic data from intestinal microbiotaJOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France |
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An alife game to teach evolution of antibiotic resistanceECAL - 12th European Conference on Artificial Life - 2013, Sep 2013, Taormina, Italy. pp.43-50 |
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In silico experimental evolution: a tool to test evolutionary scenarios11th RECOMB - Comparative Genomics 2013, Oct 2013, Villeurbane, France |
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Étude de l'évolution réductive des génomes bactériens par expériences d'évolution in silico et analyses bioinformatiquesBio-Informatique, Biologie Systémique [q-bio.QM]. INSA de Lyon, 2014. Français. ⟨NNT : 2014ISAL0108⟩ |
ELIXIR Microbiome Community – 2025 face to face/hybrid meeting reportELIXIR. 2025 |
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EOSC-Life Report on the work of the Open Call Projects3.3, EMBL-HD; CSIC. 2023 |