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Cécile Donnadieu

34
Documents

Domaines de recherche

Sciences de l'environnement Sciences du Vivant [q-bio]

Compétences

Project Leader Manager Quality

Publications

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Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology

Sonia E Eynard , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro , Sandrine Lagarrigue
Environmental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. , pp.118, Book of abstracts
Poster de conférence hal-04473354v1
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Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breeds

Amandine Suin , Camille Marcuzzo , Camille Eché , Andreea Dréau , Clément Birbes
Plant and Genome San Diego 2024, Jan 2024, San Diego, United States
Poster de conférence hal-04432840v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

Camille Eché , Carole Iampietro , Clément Birbes , Andreea Dréau , Claire Kuchly
Plant and Genome San Diego 2024, Jan 2024, San Diego (California), United States. 10, 2024
Poster de conférence hal-04432803v1
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Search for new mutations in cattle by systemac whole genome resequencing

Mekki Boussaha , Camille Eché , Clémentine Escouflaire , Cécile Grohs , Carole Iampietro
39th International Society of Animal Genetics Conference, Jul 2023, Cape Town / Le Cap, South Africa
Poster de conférence hal-04170956v1
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Transgenerational epigenetics in quail: whole genome DNA methylation analysis

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon
Epigenetic Inheritance: Impact for Biology and Society, Aug 2023, Zurich, Switzerland
Poster de conférence hal-04212971v1
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Strengths and limits of long read metabarcoding

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro
ECCB 2022, Sep 2022, Meliá Sitges, Spain
Poster de conférence hal-03848228v1

Vers une carte de l'imprintome porcin

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Rémy-Félix Serre , Céline Vandecasteele
Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France
Poster de conférence hal-04099355v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin
ECCB2022, Sep 2022, Sitges, Spain
Poster de conférence hal-03788263v1
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Implementation of new methods for metagenomics analysis using PacBio HiFi sequencing

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence hal-03541346v1
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Structural variants detection and de novo genome assembly of a maize line

Carole Iampietro , Camille Eché , Clément Birbes , Arnaud Di Franco , Andreea Dréau
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence hal-03541379v1
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Transgenerational epigenetics in quail

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon
ECCB2022 - 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain
Poster de conférence hal-03935584v1
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Preliminary results from Nanopore Q20+ sequencing

Claire Kuchly , Jules Sabban , Eden Darnige , Camille Eché , Amandine Suin
JOBIM 2022 : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2022, RENNES, France. 2022
Poster de conférence hal-03719401v1
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De novo assembly of bovine genome using PacBio applications

Camille Eché , Clément Birbes , Carole Iampietro , Andreea Dréau , Claire Kuchly
SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence hal-03541224v1
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Improving microbial taxonomic profiling with long read technologies

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro
JOBIM2020, Jun 2020, Montpellier (virtuel), France
Poster de conférence hal-03177058v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

Camille Eché , Carole Iampietro , Clément Birbes , Andreea Dréau , Claire Kuchly
Scientific Data , 2023, 10 (1), pp.369. ⟨10.1038/s41597-023-02249-1⟩
Article dans une revue hal-04122201v1
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Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets

Jeanlin Jourdain , Harmonie Barasc , Thomas Faraut , Anne Calgaro , Nathalie Bonnet
Genome Research, 2023, 33 (6), pp.957-971. ⟨10.1101/gr.277787.123⟩
Article dans une revue hal-04170739v1
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques
Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩
Article dans une revue hal-03765882v1

Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage

Stefan Kusch , Justine Larrouy , Heba Ibrahim , Shantala Mounichetty , Noémie Gasset
The International Society of Microbiologial Ecology Journal, 2022, 16 (1), pp.138-148. ⟨10.1038/s41396-021-01058-x⟩
Article dans une revue hal-03331958v1
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The genomic history and global expansion of domestic donkeys

Evelyn Todd , Laure Tonasso-Calvière , Loreleï Chauvey , Stéphanie Schiavinato , Antoine Fages
Science, 2022, 377 (6611), pp.1172-1180. ⟨10.1126/science.abo3503⟩
Article dans une revue hal-03827857v1
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Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region

Andrew J. Jasonowicz , Anna Simeon , Margot Zahm , Cédric Cabau , Christophe C. Klopp
Molecular Ecology Resources, 2022, pp.1-16. ⟨10.1111/1755-0998.13641⟩
Article dans une revue hal-03737450v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm
Molecular Ecology Resources, 2022, pp.1-18. ⟨10.1111/1755-0998.13620⟩
Article dans une revue hal-03652234v1
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Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae

Aurélie Allais-Bonnet , Aurélie Hintermann , Marie-Christine Deloche , Raphael Cornette , Philippe Bardou
Molecular Biology and Evolution, 2021, ⟨10.1093/molbev/msab021⟩
Article dans une revue hal-03164832v1
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Prediction of SARS-CoV-2 Variant Lineages Using the S1-Encoding Region Sequence Obtained by PacBio Single-Molecule Real-Time Sequencing

Sébastien Lhomme , Justine Latour , Nicolas Jeanne , Pauline Trémeaux , Noémie Ranger
Viruses, 2021, 13 (12), pp.2544. ⟨10.3390/v13122544⟩
Article dans une revue hal-03771640v1
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A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus

Boudjema Imarazene , Kang Du , Séverine Beille , Elodie Jouanno , Romain Feron
Current Biology - CB, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩
Article dans une revue hal-03337251v1
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Influence of age on the spread of SARS-CoV-2 variant B.1.1.7

Chloé Dimeglio , Florence Nicot , Marcel Miedougé , Jean-Loup Chappert , Cécile Donnadieu
Journal of Clinical Virology, 2021, 141, ⟨10.1016/j.jcv.2021.104872⟩
Article dans une revue hal-03739196v1
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Improvement of the Bos taurus Genome Assembly using New Sequencing Technologies

Camille Eché , Carole Iampietro , Clement Birbes , Andreea Dreau , Claire Kuchly
Discoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France
Communication dans un congrès hal-04096124v1
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The benefits of long read HiFi sequencing for metabarcoding analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin
PACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France
Communication dans un congrès hal-03740586v1

In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates

Alain Vignal , Sonia E Eynard , Christophe C. Klopp , Bertrand Servin , Kamila Canale-Tabet
9th European Congress of Apidology, Sep 2022, Belgrade, Serbia
Communication dans un congrès hal-03855207v1

metagWGS : a workflow to analyse short or long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin
Bioinfo Biosta Genotoul day, Dec 2022, Castanet Tolosan, France
Communication dans un congrès hal-03944382v1

Targeting the pig imprintome

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Rémy-Félix Serre , Céline Vandecasteele
Advances in Genome Biology and Technology Agriculture (AGBT-Ag), Apr 2022, San Diego, United States
Communication dans un congrès hal-04099166v1
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The benefits of long read HiFi sequencing for metagenomic analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin
France génomique - VIIème Animation Wetlab et Bioinfo, Nov 2022, Strasbourg, France
Communication dans un congrès hal-03896074v1
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Transgenerational epigenetics in quail

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon
Genotoul Biostat Bioinfo Day, Dec 2022, Castanet-Tolosan, France
Communication dans un congrès hal-03957296v1