Cécile Donnadieu
Domaines de recherche
Compétences
Publications
Publications
Modelling genetic and epigenetic selection signatures from pool sequencing.Environmental and Agronomical Genomics Symposium, france génomique; greenomics, Feb 2026, Paris, France |
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Construction and characterization of a comprehensive ovine pangenome from 11 breeds provides new insights into their genetic diversity75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), Sep 2024, Florence (IT), Italy |
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The construction of a cattle pangenome for 14 French dairy and beef breeds provides new insights into their genetic diversity.75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), European Federation of Animal Science (EAAP), Sep 2024, Florence, Italy. pp.288 |
Genotyping a thousand animals using low coverage sequencing and imputationGenotoul biostat bioinfo day, Genotoul, Nov 2023, Toulouse, France |
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Improvement of the Bos taurus Genome Assembly using New Sequencing TechnologiesDiscoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France |
metagWGS : a workflow to analyse short or long HiFi metagenomic readsBioinfo Biosta Genotoul day, Dec 2022, Castanet-Tolosan, France |
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Targeting the pig imprintomeAdvances in Genome Biology and Technology Agriculture (AGBT-Ag), Apr 2022, San Diego, United States |
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The benefits of long read HiFi sequencing for metabarcoding analysisPACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France |
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Transgenerational epigenetics in quailGenotoul Biostat Bioinfo Day, Dec 2022, Castanet-Tolosan, France |
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The benefits of long read HiFi sequencing for metagenomic analysisFrance génomique - VIIème Animation Wetlab et Bioinfo, Nov 2022, Strasbourg, France |
In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates9th European Congress of Apidology, Sep 2022, Belgrade, Serbia |
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De novo genome assembly of a western European Apis mellifera mellifera black beeApimondia, Sep 2019, Montréal, Canada |
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Détection moléculaire et caractérisation de virus respiratoires du canard par une approche de séquençage à haut débitJournée SEVAB, Nov 2012, Toulouse, France |
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Genetic and epigenetic selection signatures from pool sequencing expeimentEpigenetic inheritance symposium, Aug 2025, Zurich, Switzerland |
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Genetic and epigenetic selection signatures from pool sequencing experimentBiology of genomes, May 2025, Cold Spring Harbor (NY), United States |
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Evaluating low-pass genotyping strategies using PARSEC, a scalable and modular Nextflow pipelineIntelligent Systems for Molecular Biology/European Conference on Computational Biology, Jul 2025, Liverpool, United Kingdom |
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Modelling genetic and epigenetic selection signatures from pool sequencingEpiphase, Nov 2025, Toulouse, France |
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Outil d'épi-génotypage haut-débit par capture cibléeColloque INRAE Genomics, Jun 2025, Clermont-Ferrand, France. ⟨10.15454/1.5572370921303193E12⟩ |
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Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore TechnologyInternational congress in Ecology and Evolution, Oct 2024, Lyon, France |
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Transgenerational epigenetics in quail: targeting DNA methylation patterns to address the interplay between genetic and epigenetic mechanismsEcology and Evolution, Oct 2024, Lyon, France |
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Targeting the pig imprintome with EM-seq2024 Environnemental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. |
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Benchmarking of sequencing technologies for CpG methylation detection: applications to quail and pigLondon Calling 2024, May 2024, Londres, United Kingdom |
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Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore TechnologyEnvironmental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. , pp.118, Book of abstracts |
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant callingPlant and Genome San Diego 2024, Jan 2024, San Diego, United States. 10, 2024 |
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Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breedsPlant and Genome San Diego 2024, Jan 2024, San Diego, United States |
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Search for new mutations in cattle by systemac whole genome resequencing39th International Society of Animal Genetics Conference, Jul 2023, Cape Town, South Africa |
L’évolution de l’épigénétique au cours de plusieurs générations de sélectionEpiPhase, Oct 2023, Jouy en Josas, France |
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Transgenerational epigenetics in quail: whole genome DNA methylation analysisEpigenetic Inheritance: Impact for Biology and Society, Aug 2023, Zurich, Switzerland |
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Structural variants detection and de novo genome assembly of a maize linePlant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States |
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metagWGS: a workflow to analyse short and long HiFi metagenomic readsECCB2022, Sep 2022, Sitges, Spain |
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Transgenerational epigenetics in quailECCB2022 - 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain |
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Implementation of new methods for metagenomics analysis using PacBio HiFi sequencingPlant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States |
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Vers une carte de l'imprintome porcinJournées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France |
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Preliminary results from Nanopore Q20+ sequencingJOBIM 2022 : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2022, Rennes, France. 2022 |
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De novo assembly of 90 bovines genomes using PacBio CLR application comparison and optimizationAssemblée générale France Génomique, Jun 2022, Paris, France |
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Strengths and limits of long read metabarcodingECCB 2022, Sep 2022, Meliá Sitges, Spain |
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De novo assembly of bovine genome using PacBio applicationsSMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands |
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Improving microbial taxonomic profiling with long read technologiesJOBIM2020, Jun 2020, Online, France |