Cécile Donnadieu

Sunflower Ecosystem Services Genomicist LIPME Toulouse ASTR team
81
Documents

Domaines de recherche

Sciences de l'environnement Sciences du Vivant [q-bio]

Compétences

Project Leader Manager Quality Genomic sequencing sunflower pollinator ecosystem services

Publications

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Publications

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A comprehensive genome-wide scan for parent-of-origin expressed genes in the pig clarifies the conservation landscape of genomic imprinting

Mathilde Perret , Nathalie Iannuccelli , Sophie Leroux , Katia Fève , Patrice Dehais et al.

Genetics Selection Evolution, 2026, 58 (1), pp.18. ⟨10.1186/s12711-026-01031-2⟩

Article dans une revue hal-05560333v1
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Assembly of a pangenome uncovers novel non-reference unique insertion sequences in cattle highlighting their genetic diversity

Valentin Sorin , Florian Besnard , Aurélien Capitan , Cécile Grohs , Maulana Mughitz Naji et al.

Journal of Animal Science and Biotechnology , 2026, 17 (1), pp.47. ⟨10.1186/s40104-026-01373-3⟩

Article dans une revue hal-05543227v1
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An optimized protocol to detect high‐throughput DNA methylation from custom targeted sequences on 96 samples simultaneously

Nathalie Iannuccelli , Sophie Valière , Julien Sarry , Cécile Donnadieu , Julie Demars

FEBS Open Bio, 2025, ⟨10.1002/2211-5463.70093⟩

Article dans une revue hal-05228548v1
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Whole genome short read data from 567 bulls of 14 breeds provides insight into genetic diversity of French cattle

Mekki Boussaha , Camille Eché , Christophe Klopp , Cécile Grohs , Marine Milhes et al.

Data in Brief, 2025, 62, pp.112049. ⟨10.1016/j.dib.2025.112049⟩

Article dans une revue (data paper) hal-05268512v1
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Comprehensive detection of structural variations in long and short reads dataset of French cattle

Maulana Mughitz Naji , Christophe Klopp , Camille Eché , Arnaud Di Franco , Clément Birbes et al.

Scientific Reports, 2025, 15 (1), pp.40758. ⟨10.1038/s41598-025-24477-8⟩

Article dans une revue hal-05391915v1
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Application of a French cattle pangenome, from structural variant discovery to association studies on key phenotypes

Valentin Sorin , Maulana Mughitz Naji , Clément Birbes , Cécile Grohs , Clémentine Escouflaire et al.

Genetics Selection Evolution, 2025, 57, pp.61. ⟨10.1186/s12711-025-01012-x⟩

Article dans une revue hal-05330359v1
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Pig and quail CpG methylation datasets from short and long read sequencing technologies

Paul Terzian , Céline Vandecasteele , Joanna Lledo , Rémy-Félix Serre , Jules Sabban et al.

Scientific Data , 2025, 12 (1), pp.556. ⟨10.1038/s41597-025-04769-4⟩

Article dans une revue hal-05039144v1
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Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae

Heiner Kuhl , Peter Euclide , Christophe Klopp , Cédric Cabau , Margot Zahm et al.

BMC Biology, 2024, 22 (1), pp.141. ⟨10.1186/s12915-024-01935-9⟩

Article dans une revue hal-04638789v1
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Massive detection of cryptic recessive genetic defects in dairy cattle mining millions of life histories

Florian Besnard , Ana Guintard , Cécile Grohs , Laurence Guzylack-Piriou , Margarita Cano et al.

Genome Biology, 2024, 25 (1), pp.248. ⟨10.1186/s13059-024-03384-7⟩

Article dans une revue hal-04714371v1
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Detection of DNA methylation signatures through the lens of genomic imprinting

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Eva Jacomet , Yvon Billon et al.

Scientific Reports, 2024, 14 (1), pp.1694. ⟨10.1038/s41598-024-52114-3⟩

Article dans une revue hal-04453257v1
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Whole‐genome sequencing of SARS‐CoV‐2: Comparison of target capture and amplicon single molecule real‐time sequencing protocols

Florence Nicot , Pauline Trémeaux , Justine Latour , Nicolas Jeanne , Noémie Ranger et al.

Journal of Medical Virology, 2023, 95 (1), pp.e28123. ⟨10.1002/jmv.28123⟩

Article dans une revue hal-03988344v1
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Suspicions of two bridgehead invasions of Xylella fastidiosa subsp. multiplex in France

Enora Dupas , Karine Durand , Adrien Rieux , Martial Briand , Olivier Pruvost et al.

Communications Biology, 2023, 6 (1), pp.103. ⟨10.1038/s42003-023-04499-6⟩

Article dans une revue hal-03975291v1
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Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets

Jeanlin Jourdain , Harmonie Barasc , Thomas Faraut , Anne Calgaro , Nathalie Bonnet et al.

Genome Research, 2023, 33 (6), pp.957-971. ⟨10.1101/gr.277787.123⟩

Article dans une revue hal-04170739v1
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Early dispersal of domestic horses into the Great Plains and northern Rockies

William Timothy Treal Taylor , Pablo Librado , Mila Hunska Tašunke Icu , Carlton Shield Chief Gover , Jimmy Arterberry et al.

Science, 2023, 379 (6639), pp.1316-1323. ⟨10.1126/science.adc9691⟩

Article dans une revue hal-04065852v1
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Size Fractionation of Milliliter DNA Samples in Minutes Controlled by an Electric Field of ∼10 V

Paul Bruand , Inga Tijunelyte , Adrien Castinel , Cécile Donnadieu , Pierre Joseph et al.

Analytical Chemistry, 2023, 95 (49), pp.18099-18106. ⟨10.1021/acs.analchem.3c03187⟩

Article dans une revue hal-04322873v1
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The genomics of linkage drag in inbred lines of sunflower

Kaichi Huang , Mojtaba Jahani , Jérôme Gouzy , Alexandra Legendre , Sébastien Carrere et al.

Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (14), pp.e2205783119. ⟨10.1073/pnas.2205783119⟩

Article dans une revue hal-04198273v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

Camille Eché , Carole Iampietro , Clément Birbes , Andreea Dréau , Claire Kuchly et al.

Scientific Data , 2023, 10 (1), pp.369. ⟨10.1038/s41597-023-02249-1⟩

Article dans une revue (data paper) hal-04122201v1
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques et al.

Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩

Article dans une revue hal-03765882v1
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Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region

Andrew J. Jasonowicz , Anna Simeon , Margot Zahm , Cédric Cabau , Christophe Klopp et al.

Molecular Ecology Resources, 2022, 22 (7), pp.2685-2700. ⟨10.1111/1755-0998.13641⟩

Article dans une revue hal-03737450v1

Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage

Stefan Kusch , Justine Larrouy , Heba Ibrahim , Shantala Mounichetty , Noémie Gasset et al.

The International Society of Microbiologial Ecology Journal, 2022, 16 (1), pp.138-148. ⟨10.1038/s41396-021-01058-x⟩

Article dans une revue hal-03331958v1
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The genomic history and global expansion of domestic donkeys

Evelyn Todd , Laure Tonasso-Calvière , Loreleï Chauvey , Stéphanie Schiavinato , Antoine Fages et al.

Science, 2022, 377 (6611), pp.1172-1180. ⟨10.1126/science.abo3503⟩

Article dans une revue hal-03827857v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm et al.

Molecular Ecology Resources, 2022, 22 (6), pp.2411-2428. ⟨10.1111/1755-0998.13620⟩

Article dans une revue hal-03652234v1
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Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae

Aurélie Allais-Bonnet , Aurélie Hintermann , Marie-Christine Deloche , Raphael Cornette , Philippe Bardou et al.

Molecular Biology and Evolution, 2021, ⟨10.1093/molbev/msab021⟩

Article dans une revue hal-03164832v1
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Influence of SARS-CoV-2 Variant B.1.1.7, Vaccination, and Public Health Measures on the Spread of SARS-CoV-2

Chloé Dimeglio , Marine Milhes , Jean-Michel Loubes , Noémie Ranger , Jean-Michel Mansuy et al.

Viruses, 2021, 13 (5), pp.898. ⟨10.3390/v13050898⟩

Article dans une revue hal-03739146v1
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Prediction of SARS-CoV-2 Variant Lineages Using the S1-Encoding Region Sequence Obtained by PacBio Single-Molecule Real-Time Sequencing

Sébastien Lhomme , Justine Latour , Nicolas Jeanne , Pauline Trémeaux , Noémie Ranger et al.

Viruses, 2021, 13 (12), pp.2544. ⟨10.3390/v13122544⟩

Article dans une revue hal-03771640v1
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Influence of age on the spread of SARS-CoV-2 variant B.1.1.7

Chloé Dimeglio , Florence Nicot , Marcel Miedougé , Jean-Loup Chappert , Cécile Donnadieu et al.

Journal of Clinical Virology, 2021, 141, ⟨10.1016/j.jcv.2021.104872⟩

Article dans une revue hal-03739196v1
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A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus

Boudjema Imarazene , Kang Du , Séverine Beille , Elodie Jouanno , Romain Feron et al.

Current Biology, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩

Article dans une revue hal-03337251v1
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Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques et al.

Molecular Ecology Resources, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩

Article dans une revue hal-02623895v1

A Chromosome-Scale Genome Assembly Resource for Myriosclerotinia sulcatula Infecting Sedge Grass ( Carex sp.)

Stefan Kusch , Heba Ibrahim , Catherine Zanchetta , Celine Lopez-Roques , Cécile Donnadieu et al.

Molecular Plant-Microbe Interactions, 2020, 33 (7), pp.880-883. ⟨10.1094/MPMI-03-20-0060-A⟩

Article dans une revue hal-02900377v1

Evidence for a duplicated mitochondrial region in Audubon’s shearwater based on MinION sequencing

Lucas Torres , Andreanna Welch , Catherine Zanchetta , R. Terry Chesser , Maxime Manno et al.

Mitochondrial DNA Part A, 2019, 30 (2), pp.256-263. ⟨10.1080/24701394.2018.1484116⟩

Article dans une revue hal-01851856v1
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The Genomic Basis of Color Pattern Polymorphism in the Harlequin Ladybird

Mathieu Gautier , Junichi Yamaguchi , Julien Foucaud , Anne Loiseau , Aurélien Ausset et al.

Current Biology, 2018, 28 (20), pp.1-7. ⟨10.1016/j.cub.2018.08.023⟩

Article dans une revue hal-01864435v1
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Rapid whole-genome based typing and surveillance of avipoxviruses using nanopore sequencing.

Guillaume Croville , Guillaume Le Loc'H , Catherine Zanchetta , Maxime Manno , Christelle Camus-Bouclainville et al.

Journal of Virological Methods, 2018, 261, pp.34-39. ⟨10.1016/j.jviromet.2018.08.003⟩

Article dans une revue hal-02626516v1
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Population genomics of picophytoplankton unveils novel chromosome hypervariability

Romain Blanc-Mathieu , Marc Krasovec , Maxime Hebrard , Sheree Yau , Elodie Desgranges et al.

Science Advances , 2017, 3 (7), pp.e1700239. ⟨10.1126/sciadv.1700239⟩

Article dans une revue lirmm-01842137v1
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The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

Hélène Badouin , Jerome Gouzy , Christopher Grassa , Florent Murat , S Evan Staton et al.

Nature, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩

Article dans une revue hal-01603287v1
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A panel of embryonic stem cell lines reveals the variety and dynamic of pluripotent states in rabbits

Pierre Osteil , Anaïs Moulin , Claire Santamaria , Thierry Joly , Luc Jouneau et al.

Stem Cell Reports, 2016, 7 (3), pp.383-398. ⟨10.1016/j.stemcr.2016.07.022⟩

Article dans une revue hal-02639328v1

Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules

Baptiste Mayjonade , Jerome Gouzy , Cécile Donnadieu , Nicolas Pouilly , William Marande et al.

Biotechniques, 2016, 61 (4), pp.203-205. ⟨10.2144/000114460⟩

Article dans une revue hal-01608743v1
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Correction : Design and Characterization of a 52K SNP Chip for Goats

Gwenola Tosser-Klopp , Philippe Bardou , Olivier Bouchez , Cédric Cabau , Richard Crooijmans et al.

PLoS ONE, 2016, 11 (3), pp.Non Paginé. ⟨10.1371/journal.pone.0152632⟩

Article dans une revue hal-01602260v1
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Reinforcement of STAT3 activity reprogrammes human embryonic stem cells to naive-like pluripotency

Hongwei Chen , Irène Aksoy , Fabrice Gonnot , Pierre Osteil , Maxime Aubry et al.

Nature Communications, 2015, 6 (1), ⟨10.1038/ncomms8095⟩

Article dans une revue hal-01997120v1
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The characterization of novel tissue microbiota using an optimized 16S metagenomic sequencing pipeline

Jérôme J. Lluch , Florence Servant , Sandrine Païssé , Carine Valle , Sophie Valiere et al.

PLoS ONE, 2015, 10 (11), pp.1-22. ⟨10.1371/journal.pone.0142334⟩

Article dans une revue hal-02637487v1
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Novel Avian Coronavirus and Fulminating Disease in Guinea Fowl, France

Etienne Liais , Guillaume Croville , Jérôme J. Mariette , Maxence Delverdier , Marie-Noêlle Lucas et al.

Emerging Infectious Diseases, 2014, 20 (1), pp.105-108. ⟨10.3201/eid2001.130774⟩

Article dans une revue hal-02638202v1

Development of SNP-genotyping arrays in two shellfish species

S. Lapegue , E Harrang , S Heurtebise , E Flahauw , C Donnadieu et al.

Molecular Ecology, 2014, 14 (4), pp.820-830. ⟨10.1111/1755-0998.12230⟩

Article dans une revue hal-01082464v1
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A 3.7 Mb deletion encompassing ZEB2 causes a novel polled and multisystemic syndrome in the progeny of a somatic mosaic bull

Aurelien Capitan , Aurélie Allais-Bonnet , Alain Pinton , Brigitte Marquant-Le Guienne , Daniel Le Bourhis et al.

PLoS ONE, 2012, 7, online (11), Non paginé. ⟨10.1371/journal.pone.0049084⟩

Article dans une revue hal-01019835v1
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Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea

Chrystel Deulvot , Hélène Charrel , Amandine Marty , Françoise Jacquin , Cecile Donnadieu et al.

BMC Genomics, 2010, 11 (august), Non paginé. ⟨10.1186/1471-2164-11-468⟩

Article dans une revue hal-02665874v1

Modelling genetic and epigenetic selection signatures from pool sequencing.

Sonia E Eynard , Kossi-Julien Kowou , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro et al.

Environmental and Agronomical Genomics Symposium, france génomique; greenomics, Feb 2026, Paris, France

Communication dans un congrès hal-05538015v1
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Construction and characterization of a comprehensive ovine pangenome from 11 breeds provides new insights into their genetic diversity

Valentin Sorin , Julien Sarry , Clément Birbes , Carole Iampietro , Camille Eché et al.

75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), Sep 2024, Florence (IT), Italy

Communication dans un congrès hal-05288847v1
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The construction of a cattle pangenome for 14 French dairy and beef breeds provides new insights into their genetic diversity.

Valentin Sorin , Marie-Pierre Sanchez , Carole Iampietro , Camille Eché , Amandine Suin et al.

75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), European Federation of Animal Science (EAAP), Sep 2024, Florence, Italy. pp.288

Communication dans un congrès hal-04694228v1

Genotyping a thousand animals using low coverage sequencing and imputation

Cervin Guyomar , Denis Milan , Christophe Klopp , Cécile Donnadieu , Bertrand Servin et al.

Genotoul biostat bioinfo day, Genotoul, Nov 2023, Toulouse, France

Communication dans un congrès hal-04669286v1
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Improvement of the Bos taurus Genome Assembly using New Sequencing Technologies

Camille Eché , Carole Iampietro , Clement Birbes , Andreea Dreau , Claire Kuchly et al.

Discoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France

Communication dans un congrès hal-04096124v1

metagWGS : a workflow to analyse short or long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin et al.

Bioinfo Biosta Genotoul day, Dec 2022, Castanet-Tolosan, France

Communication dans un congrès hal-03944382v1
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Targeting the pig imprintome

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Rémy-Félix Serre , Céline Vandecasteele et al.

Advances in Genome Biology and Technology Agriculture (AGBT-Ag), Apr 2022, San Diego, United States

Communication dans un congrès hal-04099166v1
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The benefits of long read HiFi sequencing for metabarcoding analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.

PACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France

Communication dans un congrès hal-03740586v1
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Transgenerational epigenetics in quail

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon et al.

Genotoul Biostat Bioinfo Day, Dec 2022, Castanet-Tolosan, France

Communication dans un congrès hal-03957296v1
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The benefits of long read HiFi sequencing for metagenomic analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.

France génomique - VIIème Animation Wetlab et Bioinfo, Nov 2022, Strasbourg, France

Communication dans un congrès hal-03896074v1

In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates

Alain Vignal , Sonia E Eynard , Christophe Klopp , Bertrand Servin , Kamila Canale-Tabet et al.

9th European Congress of Apidology, Sep 2022, Belgrade, Serbia

Communication dans un congrès hal-03855207v1

De novo genome assembly of a western European Apis mellifera mellifera black bee

Alain Vignal , Sonia E Eynard , Christophe Klopp , Kamila Canale Tabet , William Marande et al.

Apimondia, Sep 2019, Montréal, Canada

Communication dans un congrès hal-04796454v1
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Détection moléculaire et caractérisation de virus respiratoires du canard par une approche de séquençage à haut débit

Etienne Liais , Guillaume Croville , Jérôme J. Mariette , Christophe Klopp , Cécile Donnadieu et al.

Journée SEVAB, Nov 2012, Toulouse, France

Communication dans un congrès hal-01191337v1
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Genetic and epigenetic selection signatures from pool sequencing expeiment

Sonia E Eynard , Kossi-Julien Kowou , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro et al.

Epigenetic inheritance symposium, Aug 2025, Zurich, Switzerland

Poster de conférence hal-05208140v1
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Genetic and epigenetic selection signatures from pool sequencing experiment

Sonia E Eynard , Kossi-Julien Kowou , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro et al.

Biology of genomes, May 2025, Cold Spring Harbor (NY), United States

Poster de conférence hal-05117238v1
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Evaluating low-pass genotyping strategies using PARSEC, a scalable and modular Nextflow pipeline

Cervin Guyomar , Denis Milan , Christophe Klopp , Cécile Donnadieu , Bertrand Servin et al.

Intelligent Systems for Molecular Biology/European Conference on Computational Biology, Jul 2025, Liverpool, United Kingdom

Poster de conférence hal-05163312v1
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Modelling genetic and epigenetic selection signatures from pool sequencing

Sonia E Eynard , Kossi-Julien Kowou , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro et al.

Epiphase, Nov 2025, Toulouse, France

Poster de conférence hal-05538035v1
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Outil d'épi-génotypage haut-débit par capture ciblée

Nathalie Iannuccelli , Sophie Valière , Julien Sarry , Cécile Donnadieu , Julie Demars

Colloque INRAE Genomics, Jun 2025, Clermont-Ferrand, France. ⟨10.15454/1.5572370921303193E12⟩

Poster de conférence hal-05421501v1
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Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology

Sonia E Eynard , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro , Sandrine Lagarrigue et al.

International congress in Ecology and Evolution, Oct 2024, Lyon, France

Poster de conférence hal-04796434v1
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Transgenerational epigenetics in quail: targeting DNA methylation patterns to address the interplay between genetic and epigenetic mechanisms

Stacy Rousse , Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo et al.

Ecology and Evolution, Oct 2024, Lyon, France

Poster de conférence hal-04770637v1
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Targeting the pig imprintome with EM-seq

Jean-Noël Hubert , Nathalie Iannuccelli , Mathilde Perret , Cédric Cabau , Eva Jacomet et al.

2024 Environnemental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France.

Poster de conférence hal-04668372v1
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Benchmarking of sequencing technologies for CpG methylation detection: applications to quail and pig

Céline Vandecasteele , Paul Terzian , Joanna Lledo , Rémy-Félix Serre , Jules Sabban et al.

London Calling 2024, May 2024, Londres, United Kingdom

Poster de conférence hal-04638952v1
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Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology

Sonia E Eynard , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro , Sandrine Lagarrigue et al.

Environmental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. , pp.118, Book of abstracts

Poster de conférence hal-04473354v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

Camille Eché , Carole Iampietro , Clément Birbes , Andreea Dréau , Claire Kuchly et al.

Plant and Genome San Diego 2024, Jan 2024, San Diego, United States. 10, 2024

Poster de conférence hal-04432803v1
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Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breeds

Amandine Suin , Camille Marcuzzo , Camille Eché , Andreea Dréau , Clément Birbes et al.

Plant and Genome San Diego 2024, Jan 2024, San Diego, United States

Poster de conférence hal-04432840v1
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Search for new mutations in cattle by systemac whole genome resequencing

Mekki Boussaha , Camille Eché , Clémentine Escouflaire , Cécile Grohs , Carole Iampietro et al.

39th International Society of Animal Genetics Conference, Jul 2023, Cape Town, South Africa

Poster de conférence hal-04170956v1

L’évolution de l’épigénétique au cours de plusieurs générations de sélection

Sonia E Eynard , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro , Sandrine Lagarrigue et al.

EpiPhase, Oct 2023, Jouy en Josas, France

Poster de conférence hal-04796446v1
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Transgenerational epigenetics in quail: whole genome DNA methylation analysis

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon et al.

Epigenetic Inheritance: Impact for Biology and Society, Aug 2023, Zurich, Switzerland

Poster de conférence hal-04212971v1
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Structural variants detection and de novo genome assembly of a maize line

Carole Iampietro , Camille Eché , Clément Birbes , Arnaud Di Franco , Andreea Dréau et al.

Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States

Poster de conférence hal-03541379v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin et al.

ECCB2022, Sep 2022, Sitges, Spain

Poster de conférence hal-03788263v1
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Transgenerational epigenetics in quail

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon et al.

ECCB2022 - 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain

Poster de conférence hal-03935584v1
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Implementation of new methods for metagenomics analysis using PacBio HiFi sequencing

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.

Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States

Poster de conférence hal-03541346v1
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Vers une carte de l'imprintome porcin

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Rémy-Félix Serre , Céline Vandecasteele et al.

Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France

Poster de conférence hal-04099355v1
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Preliminary results from Nanopore Q20+ sequencing

Claire Kuchly , Jules Sabban , Eden Darnige , Camille Eché , Amandine Suin et al.

JOBIM 2022 : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2022, Rennes, France. 2022

Poster de conférence hal-03719401v1
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De novo assembly of 90 bovines genomes using PacBio CLR application comparison and optimization

Camille Marcuzzo , Amandine Suin , Camille Eché , Andreea Dreau , Clément Birbes et al.

Assemblée générale France Génomique, Jun 2022, Paris, France

Poster de conférence hal-04590746v1
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Strengths and limits of long read metabarcoding

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.

ECCB 2022, Sep 2022, Meliá Sitges, Spain

Poster de conférence hal-03848228v1
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De novo assembly of bovine genome using PacBio applications

Camille Eché , Clément Birbes , Carole Iampietro , Andreea Dréau , Claire Kuchly et al.

SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands

Poster de conférence hal-03541224v1
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Improving microbial taxonomic profiling with long read technologies

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.

JOBIM2020, Jun 2020, Online, France

Poster de conférence hal-03177058v1