Céline Vandecasteele

42
Documents

Publications

Publications

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TAPS for Multimodal Epigenomic Profiling in Livestock A Comparison with ONT, WGBS, and EM-Seq

Céline Vandecasteele , Julie Demars , Sophie Leroux , Nathalie Iannuccelli , Carole Iampietro et al.
Plant and animal genome conference 32, Jan 2025, San Diego (California), United States. 2025
Poster de conférence hal-04911060 v1

Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology

Sonia E Eynard , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro , Sandrine Lagarrigue et al.
International congress in Ecology and Evolution, Oct 2024, Lyon, France
Poster de conférence hal-04796434 v1
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Transgenerational epigenetics in quail: targeting DNA methylation patterns to address the interplay between genetic and epigenetic mechanisms

Stacy Rousse , Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo et al.
Ecology and Evolution, Oct 2024, Lyon, France
Poster de conférence hal-04770637 v1
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Benchmarking of sequencing technologies for CpG methylation detection: applications to quail and pig

Céline Vandecasteele , Paul Terzian , Joanna Lledo , Rémy-Félix Serre , Jules Sabban et al.
London Calling 2024, May 2024, London, France
Poster de conférence hal-04638952 v1
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Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology

Sonia E Eynard , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro , Sandrine Lagarrigue et al.
Environmental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. , pp.118, Book of abstracts
Poster de conférence hal-04473354 v1
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Comparison of the PacBio 2.0 and 3.0 kits for full length mRNA sequencing in multiplex

Marine Sallaberry , Eden Darnige , Lucien Hoffbeck , Sandra Fourre , Mathis Pochon et al.
Assemblée Générale France Génomique, Jun 2023, Paris, France
Poster de conférence hal-04150252 v1

L’évolution de l’épigénétique au cours de plusieurs générations de sélection

Sonia E Eynard , Cécile Donnadieu , Loïc Flatres-Grall , Carole Iampietro , Sandrine Lagarrigue et al.
EpiPhase, Oct 2023, Jouy en Josas, France
Poster de conférence hal-04796446 v1
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Transgenerational epigenetics in quail: whole genome DNA methylation analysis

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon et al.
Epigenetic Inheritance: Impact for Biology and Society, Aug 2023, Zurich, Switzerland
Poster de conférence hal-04212971 v1

Vers une carte de l'imprintome porcin

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Rémy-Félix Serre , Céline Vandecasteele et al.
Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France
Poster de conférence hal-04099355 v1
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Transgenerational epigenetics in quail

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon et al.
ECCB2022 - 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain
Poster de conférence hal-03935584 v1
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Preliminary results from Nanopore Q20+ sequencing

Claire Kuchly , Jules Sabban , Eden Darnige , Camille Eché , Amandine Suin et al.
JOBIM 2022 : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2022, RENNES, France. 2022
Poster de conférence hal-03719401 v1
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis

Carole Iampietro , Camille Eché , Adrien Castinel , Rémy-Félix Serre , Christophe Klopp et al.
PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020
Poster de conférence hal-02947690 v1
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Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates

Jeanne Laurentie , Valentin Loux , Christelle Hennequet-Antier , Emilie Chambellon , Julien Deschamps et al.
MSphere, 2023, 8 (2), pp.e0049522. ⟨10.1128/msphere.00495-22⟩
Article dans une revue hal-04004063 v1

Complete Genome Sequence of Stenotrophomonas maltophilia 1800, a New Bacterial Strain with Potential for Bioremediation of Oil-Contaminated Environments

Annela Semai , Frédéric Plewniak , Joanna Lledo , Gwenolah Annonay , Céline Vandecasteele et al.
Microbiology Resource Announcements, 2022, 11 (2), ⟨10.1128/mra.01116-21⟩
Article dans une revue hal-04289884 v1
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Impacts of Mycoplasma agalactiae restriction-modification systems on pan-epigenome dynamics and genome plasticity

Emilie Dordet-Frisoni , Céline Vandecasteele , Rachel Contarin , Eveline Sagné , Eric Baranowski et al.
Microbial Genomics, 2022, 8 (5), pp.000829. ⟨10.1099/mgen.0.000829⟩
Article dans une revue hal-03716470 v2
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Methanobacterium alkalithermotolerans sp. nov., a novel alkaliphilic and hydrogen-utilizing methanogen isolated from an alkaline geothermal spring (La Crouen, New Caledonia)

Nan Mei , Anne Postec , Manon Bartoli , Céline Vandecasteele , Laura Wils et al.
International Journal of Systematic and Evolutionary Microbiology, 2022, 72 (10), ⟨10.1099/ijsem.0.005554⟩
Article dans une revue hal-04114150 v1

Dyes Biodegradation in the Presence of Hexavalent Chromium by Streptomyces sp. KY75: a Novel Heavy Metal Resistant Strain Isolated in Algeria

Salima Tighidet , Frédéric Plewniak , Amalia Sayeh , Lisa Gil , Céline Vandecasteele et al.
Water, Air, and Soil Pollution, 2022, 233 (7), pp.285. ⟨10.1007/s11270-022-05756-w⟩
Article dans une revue hal-04289845 v1
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Alkalicella caledoniensis gen. nov., sp. nov., a novel alkaliphilic anaerobic bacterium isolated from ‘La Crouen’ alkaline thermal spring, New Caledonia

Marianne Quéméneur , Gaël Erauso , Manon Bartoli , Céline Vandecasteele , Laura Wils et al.
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (5), pp.004810. ⟨10.1099/ijsem.0.004810⟩
Article dans une revue hal-03231234 v1
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Convergent Rewiring of the Virulence Regulatory Network Promotes Adaptation of Ralstonia solanacearum on Resistant Tomato

Rekha Gopalan-Nair , Marie-Françoise Jardinaud , Ludovic Legrand , David Landry , Xavier Barlet et al.
Molecular Biology and Evolution, 2021, 38 (5), pp.1792-1808. ⟨10.1093/molbev/msaa320⟩
Article dans une revue hal-03328995 v1
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Characterisation of hydrocarbon degradation, biosurfactant production, and biofilm formation in Serratia sp. Tan611: a new strain isolated from industrially contaminated environment in Algeria

Annela Semai , Frederic Plewniak , Armelle Charrié-Duhaut , Amalia Sayeh , Lisa Gil et al.
Antonie van Leeuwenhoek, 2021, 114 (4), pp.411-424. ⟨10.1007/s10482-021-01527-5⟩
Article dans une revue hal-03218885 v1

Complete Genome Sequences of Four Atrazine-Degrading Bacterial Strains, Pseudomonas sp. Strain ADPe, Arthrobacter sp. Strain TES, Variovorax sp. Strain 38R, and Chelatobacter sp. Strain SR38

Loren Billet , Marion Devers-Lamrani , Rémy-Félix Serre , Emmanuel Julia , Céline Vandecasteele et al.
Microbiology Resource Announcements, 2021, 10 (1), art. e01080-20 (3p.). ⟨10.1128/mra.01080-20⟩
Article dans une revue hal-03271166 v1

Complete Genome Sequence of the Type Strain Pectobacterium punjabense SS95, Isolated from a Potato Plant with Blackleg Symptoms

Sohaib Sarfraz , Saïd Oulghazi , Jeremy Cigna , Shahbaz Talib Sahi , Kashif Riaz et al.
Microbiology Resource Announcements, 2020, 9 (32), ⟨10.1128/MRA.00420-20⟩
Article dans une revue hal-02928171 v1

Complete Genome Sequence of Microbacterium sp. Strain Nx66, Isolated from Waters Contaminated with Petrochemicals in El Saf-Saf Valley, Algeria

Nardjess Chéraiti , Frédéric Plewniak , Salima Tighidet , Amalia Sayeh , Lisa Gil et al.
Microbiology Resource Announcements, 2020, 9 (47), ⟨10.1128/MRA.01130-20⟩
Article dans une revue hal-03257259 v1
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Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco

Saïd Oulghazi , Mohieddine Moumni , Slimane Khayi , Kévin Robic , Sohaib Sarfraz et al.
Microorganisms, 2020, 8 (6), pp.895. ⟨10.3390/microorganisms8060895⟩
Article dans une revue hal-02877933 v1
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Hydrostatic Pressure Helps to Cultivate an Original Anaerobic Bacterium From the Atlantis Massif Subseafloor (IODP Expedition 357): Petrocella atlantisensis gen. nov. sp. nov.

Marianne Quéméneur , Gaël Erauso , Eléonore E Frouin , Emna Zeghal , Céline Vandecasteele et al.
Frontiers in Microbiology, 2019, 10, pp.1497. ⟨10.3389/fmicb.2019.01497⟩
Article dans une revue hal-02297216 v1
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The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

Hélène Badouin , Jerome Gouzy , Christopher Grassa , Florent Murat , S Evan Staton et al.
Nature, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩
Article dans une revue hal-01603287 v1
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Comparative Analysis of Ralstonia solanacearum Methylomes

I. Erill , M. Puigvert , Ludovic Legrand , R. Guarischi-Sousa , Céline Vandecasteele et al.
Frontiers in Plant Science, 2017, 8, pp.1-16. ⟨10.3389/fpls.2017.00504⟩
Article dans une revue hal-01602628 v1
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ABI5 Is a Regulator of Seed Maturation and Longevity in Legumes

Julia Zinsmeister , David Lalanne , Emmanuel Terrasson , Emilie Chatelain , Céline Vandecasteele et al.
The Plant cell, 2016, 28 (11), pp.2735-2754. ⟨10.1105/tpc.16.00470⟩
Article dans une revue hal-01602822 v1
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Comparaison des méthodes de détection des mosaïques des blés (Bymovirus et Furovirus) par marquage moléculaire et par détection sérologique

Valerie Cadot , Michel Bonnefoy , Mathieu Rolland , Delphine Hourcade , Céline Andro et al.
Innovations Agronomiques, 2014, 35, pp.107-117. ⟨10.17180/9kvd-5a10⟩
Article dans une revue hal-04522243 v1

Characterization of a dual-affinity nitrate transporter MtNRT1.3 in the model legume Medicago truncatula.

Marie-Christine Morère-Le Paven , Laure Viau , Alain Hamon , Céline Vandecasteele , Anthoni Pellizzaro et al.
Journal of Experimental Botany, 2011, 62 (15), pp.5595-605. ⟨10.1093/jxb/err243⟩
Article dans une revue hal-00662573 v1

Avancées et perspectives ouvertes en épigénétique animale grâce à SeqOccIn.

Frédérique Pitel , Céline Vandecasteele , Julie Demars
Colloque INRAE Genomics 2022, May 2022, Orléans, France
Communication dans un congrès hal-04129124 v1
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Transgenerational epigenetics in quail

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon et al.
Genotoul Biostat Bioinfo Day, Dec 2022, Castanet-Tolosan, France
Communication dans un congrès hal-03957296 v1

Targeting the pig imprintome

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Rémy-Félix Serre , Céline Vandecasteele et al.
Advances in Genome Biology and Technology Agriculture (AGBT-Ag), Apr 2022, San Diego, United States
Communication dans un congrès hal-04099166 v1

In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates

Alain Vignal , Sonia E Eynard , Christophe Klopp , Bertrand Servin , Kamila Canale-Tabet et al.
9th European Congress of Apidology, Sep 2022, Belgrade, Serbia
Communication dans un congrès hal-03855207 v1
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Contribution of DNA methylation to host adaptation in the plant pathogen Ralstonia solanacearum

Alice Guidot , Rekha Gopalan-Nair , Ludovic Legrand , Stéphane Genin , Xavier Barlet et al.
GDR 3E / REacTION Epigénétique en Ecologie, Evolution, Agronomie et Environnement, Oct 2021, Montpellier, France
Communication dans un congrès hal-04187503 v1
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Analysis of a complex QTL region controlling the broad-spectrum resistance to <em>Phytophthora capsici</em> root rot by comparative mapping and association study in pepper germplasm

Véronique Lefebvre , Melissa Cantet , Céline Vandecasteele , Sonia S. Vautrin , Jean-Paul Bouchet et al.
15. Eucarpia Meeting on Genetics and Breeding of Capsicum and Eggplant, Sep 2013, Torino, Italy
Communication dans un congrès hal-02750004 v1
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Identifying a candidate gene for the broad-spectrum resistance qtl to <em>Phytophthora</em> root rot and blight in pepper

Véronique Lefebvre , Céline Vandecasteele , Melissa Cantet , Stéphane Mallard , Sonia S. Vautrin et al.
9. Solanaceae Conference (SOL2012), Aug 2012, Neuchâtel, Switzerland
Communication dans un congrès hal-02746226 v1

The role of oligosaccharides in seed vigour revisited using the legume model Medicago truncatula

Julia Buitink , Céline Vandecasteele , Béatrice Teulat , Marie-Christine Morère-Le Paven , Olivier Leprince et al.
10th ISSS Conference on Seed Biology, 2011, Bahia, Brazil
Communication dans un congrès hal-03339450 v1

Exploiting post-genomics resources in model species and genome conservation between model species and legume crops to accelerate seed biology discoveries in crops

Hélène Zuber , Christine Le Signor , Gregoire G. Aubert , Amandine A. Bordat , Vincent V. Savois et al.
5. International Food Legumes Reserch Conference (IFLRC V) and 7. European Conference on Grain Legumes (AEPVII) ; Legumes for Global Health Legume Crops and Products for Food, Feed and Environmental Benefits, Apr 2010, Antalya, Turkey
Communication dans un congrès hal-02754795 v1

Génétique et post-génomique chez la légumineuse modèle M. truncatula pour disséquer le déterminisme moléculaire de la composition protéique des graines de légumineuses

Karine Gallardo Guerrero , Amandine A. Bordat , Christine Le Signor , Gregoire G. Aubert , Delphine Aime et al.
2.colloque national du réseau français de biologie des graines., Jun 2009, Paris, France
Communication dans un congrès hal-02758473 v1

Déterminisme génétique de la qualité physiologique des graines chez <em>Médicago truncatula</em>

Céline Vandecasteele , Béatrice Teulat-Merah , Karine Gallardo , Julia Buitink
2ème colloque national du réseau français de biologie des graines, Jun 2009, Paris, France. 55 p
Communication dans un congrès hal-02752450 v1