Cervin Guyomar

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Publications

Empowering bioinformatics communities with Nextflow and nf-core

Björn E Langer , Andreia Amaral , Marie-Odile Baudement , Franziska Bonath , Mathieu Charles et al.
Genome Biology, 2025, 26 (1), pp.228. ⟨10.1186/s13059-025-03673-9⟩
Article dans une revue (article de synthèse) hal-05224445 v1
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Parent-of-origin regulation by maternal auts2 shapes neurodevelopment and behavior in fish

Antoine Clement , Constance Merdrignac , Sergi Roig Puiggros , Dorine Sévère , Aurélien Brionne et al.
Genome Biology, 2025, 26 (1), pp.125. ⟨10.1186/s13059-025-03600-y⟩
Article dans une revue hal-05079847 v1
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Yeast extract improves growth in rainbow trout (Oncorhynchus mykiss) fed a fishmeal-free diet and modulates the hepatic and distal intestine transcriptomic profile

Laura Frohn , Diogo Peixoto , Cervin Guyomar , Carla Teixeira , Frédéric Terrier et al.
Article dans une revue hal-04259805 v1
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Looking for a needle in a haystack: de novo phenotypic target identification reveals Hippo pathway-mediated miR-202 regulation of egg production

Sarah JANATI IDRISSI , Mariana Roza de Abreu , Cervin Guyomar , Fernanda de Mello , Thuy Thao Vi Nguyen et al.
Nucleic Acids Research, 2024, 52 (2), pp.738-754. ⟨10.1093/nar/gkad1154⟩
Article dans une revue hal-04501492 v1
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TAGADA: a scalable pipeline to improve genome annotations with RNA-seq data

Cyril Kurylo , Cervin Guyomar , Sylvain Foissac , Sarah Djebali
NAR Genomics and Bioinformatics, 2023, 5 (4), pp.lqad089. ⟨10.1093/nargab/lqad089⟩
Article dans une revue hal-04278708 v1
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Mechanisms of Isothiocyanate Detoxification in Larvae of Two Belowground Herbivores, Delia radicum and D. floralis (Diptera: Anthomyiidae)

Rebekka Sontowski , Cervin Guyomar , Yvonne Poeschl , Alexander Weinhold , Nicole M van Dam et al.
Frontiers in Physiology, 2022, 13, 17 p. ⟨10.3389/fphys.2022.874527⟩
Article dans une revue hal-03719433 v1
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A high-quality functional genome assembly of Delia radicum L. (Diptera: Anthomyiidae) annotated from egg to adult

Rebekka Sontowski , Yvonne Poeschl , Yu Okamura , Heiko Vogel , Cervin Guyomar et al.
Molecular Ecology Resources, 2022, 22 (5), pp.1954-1971. ⟨10.1111/1755-0998.13594⟩
Article dans une revue hal-03713223 v1
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FishmiRNA: An evolutionarily supported microRNA annotation and expression database for ray-finned fishes

Thomas Desvignes , Philippe Bardou , Jérôme Montfort , Jason Sydes , Cervin Guyomar et al.
Molecular Biology and Evolution, 2022, 39 (2), pp.msac004. ⟨10.1093/molbev/msac004⟩
Article dans une revue hal-03528022 v1
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Circulating miRNA repertoire as a biomarker of metabolic and reproductive states in rainbow trout

Emilie Cardona , Cervin Guyomar , Thomas Desvignes , Jérôme Montfort , Samia Guendouz et al.
BMC Biology, 2021, 19 (1), pp.235. ⟨10.1186/s12915-021-01163-5⟩
Article dans une revue hal-03436712 v1
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The first draft genome of feather grasses using SMRT sequencing and its implications in molecular studies of Stipa

Evgenii Baiakhmetov , Cervin Guyomar , Ekaterina Shelest , Marcin Nobis , Polina D Gudkova
Scientific Reports, 2021, 11 (1), pp.15345. ⟨10.1038/s41598-021-94068-w⟩
Article dans une revue hal-03336697 v1
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MinYS: mine your symbiont by targeted genome assembly in symbiotic communities

Cervin Guyomar , Wesley Delage , Fabrice Legeai , Christophe Mougel , Jean-Christophe Simon et al.
NAR Genomics and Bioinformatics, 2020, 2 (3), pp.1-11. ⟨10.1093/nargab/lqaa047⟩
Article dans une revue hal-02891885 v1
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Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Cervin Guyomar , Fabrice Legeai , Emmanuelle Jousselin , Christophe Mougel , Claire Lemaitre et al.
Microbiome, 2018, 6 (1), pp.1-21. ⟨10.1186/s40168-018-0562-9⟩
Article dans une revue hal-01926402 v1

Empowering Bioinformatics Communities with nf-core: The success of an open-source bioinformatics ecosystem

Björn E Langer , Andreia Amaral , Marie-Odile Baudement , Franziska Bonath , Mathieu Charles et al.
Intelligent Systems for Molecular Biology/European Conference on Computational Biology, Jul 2025, Liverpool, United Kingdom
Communication dans un congrès hal-05131891 v1

Hippo mediated regulation of gonad function by miR-202

Sarah JANATI IDRISSI , Mariana Roza de Abreu , Cervin Guyomar , Sylwia Judycka , Thaovi Nguyen et al.
Colloque différenciation et fonction des gonades, Mar 2025, Paris, France
Communication dans un congrès hal-05084613 v1

Functional miRNA annotation in teleost fish

Cervin Guyomar , Thomas Desvignes , Julien Bobe
AQUA-FAANG Conference, Oct 2023, Edinburgh, United Kingdom
Communication dans un congrès hal-04693216 v1

Hippo pathway-mediated regulation of micropyle formation by microRNA 202 (miR-202) in the fish oocyte

Sarah JANATI IDRISSI , Mariana Roza de Abreu , Cervin Guyomar , Martin Pšenička , Fernanda de Mello et al.
12. International Symposium on Reproductive Physiology of Fish, May 2023, Chersonissos, Greece
Communication dans un congrès hal-04210922 v1

Genotyping a thousand animals using low coverage sequencing and imputation

Cervin Guyomar , Denis Milan , Christophe Klopp , Cécile Donnadieu , Bertrand Servin et al.
Genotoul biostat bioinfo day, Genotoul, Nov 2023, Toulouse, France
Communication dans un congrès hal-04669286 v1
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UN EXTRAIT DE LEVURE AMELIORE L'EFFICACITE D'UN REGIME A BASE DE PROTEINES ANIMALES TRANSFORMEES CHEZ LA TRUITE ARC-EN-CIEL ET MODULE LA REPONSE INTESTINALE

Laura Frohn , Sandrine Skiba-Cassy , Frédéric Terrier , Pierre Aguirre , Cervin Guyomar et al.
7èmes Journées de la Recherche Piscicole, ITAVI, Jul 2022, Paris, France
Communication dans un congrès hal-04311786 v1

Hippo pathway-mediated regulation of micropyle formation by micro RNA 202 (miR-202) in the fish oocyte

Mariana Roza de Abreu , Sarah JANATI IDRISSI , Fernanda de Mello , Cervin Guyomar , Thuy Thao Vi Nguyen et al.
8. International Workshop on the Biology of Fish Gametes, Sep 2022, Gdansk, Poland
Communication dans un congrès hal-04211036 v1

Génomique fonctionnelle du déterminisme maternel du neurodéveloppement et du comportement chez les vertébrés

Antoine Clement , Cervin Guyomar , Amaury Herpin , Violaine Colson , Julien Bobe
Reprosciences 2021, Apr 2021, En ligne, France
Communication dans un congrès hal-03277813 v1
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Reference-guided genome assembly in metagenomic samples

Cervin Guyomar , Wesley Delage , Fabrice Legeai , Christophe Mougel , Jean-Christophe Simon et al.
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1-8
Communication dans un congrès hal-02308257 v1

Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Cervin Guyomar , Fabrice Legeai , Christophe Mougel , Claire Lemaitre , Jean-Christophe Simon
International Conference on Holobionts, Apr 2017, Paris, France
Communication dans un congrès hal-01638839 v1
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Evaluating low-pass genotyping strategies using PARSEC, a scalable and modular Nextflow pipeline

Cervin Guyomar , Denis Milan , Christophe Klopp , Cécile Donnadieu , Bertrand Servin et al.
Intelligent Systems for Molecular Biology/European Conference on Computational Biology, Jul 2025, Liverpool, United Kingdom
Poster de conférence hal-05163312 v1
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GWASpipe: a Nexflow pipeline for GWAS analyses incorporating quality control

Sophia Marguerit , Marc Galland , Cervin Guyomar , Jacques Lagnel , Fabrice Legeai et al.
JOBIM, événement annuel de la bioinformatique et de la biostatistique francophone, Jul 2025, Bordeaux, France. ⟨10.15454/1.5572369328961167E12⟩
Poster de conférence hal-05265454 v1
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Knowledge graph based integration of transcriptome sequencing data to explore miRNA mediated regulation

Océane Carpentier , Vincent Rocher , Sarah Djebali , Cervin Guyomar
Journées ouvertes en biologie, informatique, et mathématiques 2024, Jun 2024, Toulouse, France
Poster de conférence hal-04746334 v1
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Improving genome annotations with RNA-seq data: a scalable and reproducible workflow for Transcripts And Genes Assembly, Deconvolution, Analysis (TAGADA).

Cyril Kurylo , Cervin Guyomar , Sarah Djebali , Sylvain Foissac
ECCB 2022, Sep 2022, Sitges, France
Poster de conférence hal-03936482 v1
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Reference guided genome assembly in metagenomic samples

Cervin Guyomar , Wesley Delage , Fabrice Legeai , Christophe Mougel , Jean-Christophe Simon et al.
RECOMB 2018 - 22nd International Conference on Research in Computational Molecular Biology, Apr 2018, Paris, France. pp.1
Poster de conférence hal-01934823 v1
Image document

Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Cervin Guyomar , Fabrice Legeai , Christophe Mougel , Claire Lemaitre , Jean-Christophe Simon
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France
Poster de conférence hal-01638884 v1

Metagenomics and Metatranscriptomics

Cervin Guyomar , Claire Lemaitre
From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics, ISTE, 2022, 9781789450668
Chapitre d'ouvrage hal-03844316 v1