Charles Poncet

59%
Libre accès
59
Documents
Affiliations actuelles
  • Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
  • France Génomique (UMS CNRS 3628 - INRAE 1396 - Inserm 026)
  • Génétique Diversité et Ecophysiologie des Céréales (GDEC)
Identifiants chercheurs
Contact

Présentation

Je suis Ingénieur de Recherche INRAE et responsable de la plateforme de génomique Gentyane.

Domaines de recherche

Sciences du Vivant [q-bio]

Compétences

Génomique Management

Publications

Publications

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Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae

Heiner Kuhl , Peter Euclide , Christophe Klopp , Cédric Cabau , Margot Zahm et al.
BMC Biology, 2024, 22 (1), pp.141. ⟨10.1186/s12915-024-01935-9⟩
Article dans une revue hal-04638789 v1

A cluster of putative resistance genes is associated with a dominant resistance to sunflower broomrape

Camille Pubert , Marie-Claude Boniface , Alexandra Legendre , Mireille Chabaud , Sébastien Carrère et al.
TAG Theoretical and Applied Genetics, 2024, 137 (5), pp.103. ⟨10.1007/s00122-024-04594-0⟩
Article dans une revue hal-04559360 v1
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The genomics of linkage drag in inbred lines of sunflower

Kaichi Huang , Mojtaba Jahani , Jérôme Gouzy , Alexandra Legendre , Sébastien Carrere et al.
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (14), pp.e2205783119. ⟨10.1073/pnas.2205783119⟩
Article dans une revue hal-04198273 v1
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Whole‐genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass

Emilie Delpuech , Marc Vandeputte , Romain Morvezen , Anastasia Bestin , Mathieu Besson et al.
Genetics Selection Evolution, 2023, 55, pp.30. ⟨10.1186/s12711-023-00805-2⟩
Article dans une revue hal-04116035 v1
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Development of a High-Density 665 K SNP Array for Rainbow Trout Genome-Wide Genotyping

Maria Bernard , Audrey Dehaullon , Guangtu Gao , Katy Paul , Henri Lagarde et al.
Frontiers in Genetics, 2022, 13, ⟨10.3389/fgene.2022.941340⟩
Article dans une revue hal-03725675 v1
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Genome-wide association study and genomic prediction of tolerance to acute hypoxia in rainbow trout

M Prchal , Jonathan D’ambrosio , Henri Lagarde , Delphine Lallias , P Patrice et al.
Aquaculture, 2022, 565, pp.739068. ⟨10.1016/j.aquaculture.2022.739068⟩
Article dans une revue hal-03944462 v1

Identification of Fusarium wilt resistance loci in two major genetic backgrounds for oil palm breeding

Aurélie Daval , Virgine Pomiès , Jacques S.B. Dossa , Virginie Riou , David Lopez et al.
Industrial Crops and Products, 2022, 187, pp.115291. ⟨10.1016/j.indcrop.2022.115291⟩
Article dans une revue hal-03869755 v1
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Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral Cucurbitaceae karyotype

Clement Pichot , Anis Djari , Joseph Tran , Marion Verdenaud , William Marande et al.
iScience, 2022, 25 (1), pp.103696. ⟨10.1016/j.isci.2021.103696⟩
Article dans une revue hal-03507170 v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm et al.
Molecular Ecology Resources, 2022, 22 (6), pp.2411-2428. ⟨10.1111/1755-0998.13620⟩
Article dans une revue hal-03652234 v1
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Introduction de gènes de résistance à la rouille couronnée dans la sélection française d’avoine (Avena sativa L.)

Paul Forgeois , Murielle Picot , Amélie Bertin , Jean-Michel Delhaye , Denis Louchart et al.
Innovations Agronomiques, 2021, 84, pp.1-10. ⟨10.15454/dq5p-bb35⟩
Article dans une revue hal-03225440 v1
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Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen et al.
Aquaculture, 2021, 530, pp.735930. ⟨10.1016/j.aquaculture.2020.735930⟩
Article dans une revue hal-03544239 v1
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Harnessing the power of next‐generation sequencing technologies to the purpose of high‐throughput pesticide resistance diagnosis

Christophe Délye , Séverine Michel , Fanny Pernin , Véronique Gautier , Marie Gislard et al.
Pest Management Science, 2020, 76 (2), pp.543-552. ⟨10.1002/ps.5543⟩
Article dans une revue hal-02553796 v1
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SNP markers for early identification of high molecular weight glutenin subunits (HMW-GSs) in bread wheat

Catherine Ravel , Annie Faye , Sarah Ben-Sadoun , Marion Ranoux , Mireille Dardevet et al.
TAG Theoretical and Applied Genetics, 2020, 133 (3), pp.751-770. ⟨10.1007/s00122-019-03505-y⟩
Article dans une revue hal-02528930 v1

Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing

Clémence Fraslin , Florence Phocas , Anastasia Bestin , Mathieu Charles , Maria Bernard et al.
Scientific Reports, 2020, 10, pp.1-13. ⟨10.1038/s41598-020-74757-8⟩
Article dans une revue hal-02988446 v1
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Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding

Jonathan D’ambrosio , Florence Phocas , Pierrick Haffray , Anastasia Bestin , Sophie Brard-Fudulea et al.
Genetics Selection Evolution, 2019, 51 (1), pp.26. ⟨10.1186/s12711-019-0468-4⟩
Article dans une revue hal-02151750 v1

Genetic architecture of a plant adaptive trait: QTL mapping of intraspecific variation for tolerance to metal pollution in Arabidopsis halleri

Marie-Joe Karam , Dima Souleman , M. Sol Schvartzman , Sophie Gallina , Julien Spielmann et al.
Heredity, 2019, 122 (6), pp.877-892. ⟨10.1038/s41437-019-0184-4⟩
Article dans une revue hal-02627989 v1
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Allele-specific expression and genetic determinants of transcriptomic variations in response to mild water deficit in tomato

Elise Albert , Renaud Duboscq , Muriel Latreille , Sylvain Santoni , Matthieu Beukers et al.
The Plant Journal, 2018, 96 (3), pp.635-650. ⟨10.1111/tpj.14057⟩
Article dans une revue hal-02620940 v1
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High throughput SNP discovery and genotyping in hexaploid wheat

Hélène Rimbert , Benoît Darrier , Julien Navarro , Jonathan Kitt , Frédéric Choulet et al.
PLoS ONE, 2018, 13 (1), pp.1-19. ⟨10.1371/journal.pone.0186329⟩
Article dans une revue hal-02628543 v1
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Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple

Jorge Urrestarazu , Hélène Muranty , Caroline Denancé , Diane Leforestier , Elisa Ravon et al.
Frontiers in Plant Science, 2017, 8 (8), pp.1923. ⟨10.3389/fpls.2017.01923⟩
Article dans une revue (article de synthèse) hal-01905260 v1

Genome wide association study of two phenology traits (flowering time and maturity date) in apple

Helene Muranty , Jorge Urrestarazu , Caroline Denancé , Diane Leforestier , Elisa Ravon et al.
Acta Horticulturae, 2017, 1172, pp.411-418. ⟨10.17660/ActaHortic.2017.1172.78⟩
Article dans une revue hal-02516683 v1

Molecular epidemiology of Coxiella burnetii in French livestock reveals the existence of three main genotype clusters and suggests species-specific associations as well as regional stability

Aurélien Joulié , Karim Sidi-Boumedine , Xavier Bailly , Patrick Gasqui , Séverine Barry et al.
Infection, Genetics and Evolution, 2017, 48, pp.142-149. ⟨10.1016/j.meegid.2016.12.015⟩
Article dans une revue hal-01608895 v1
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Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas.

Alexandre Pelé , Matthieu Falque , Gwenn Trotoux , Frederique Eber , Sylvie Negre et al.
PLoS Genetics, 2017, 13 (5), pp.e1006794. ⟨10.1371/journal.pgen.1006794⟩
Article dans une revue hal-01607280 v1

Development and validation of the Axiom (R) Apple480K SNP genotyping array

Luca Bianco , Alessandro Cestaro , Gareth Linsmith , Helene Muranty , Caroline Denance et al.
The Plant Journal, 2016, 86 (1), pp.62-74. ⟨10.1111/tpj.13145⟩
Article dans une revue hal-01482820 v1

Exploiting the repetitive fraction of the wheat genome for high-throughput single-nucleotide polymorphism discovery and Genotyping

Nelly Cubizolles , Elodie Rey , Frédéric Choulet , Hélène Rimbert , Christel C. Laugier et al.
PLANT GENOME, 2016, 9 (1), ⟨10.3835/plantgenome2015.09.0078⟩
Article dans une revue hal-02635405 v1
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Analysis of the genetic diversity and structure across a wide range of germplasm reveals prominent gene flow in apple at the European level

Jorge Urrestarazu , Caroline Denance , Elisa Ravon , Arnaud Guyader , Remi Guisnel et al.
BMC Plant Biology, 2016, 16 (article 130), 20 p. ⟨10.1186/s12870-016-0818-0⟩
Article dans une revue hal-01373529 v1

Validation of QTL for resistance to Aphanomyces euteiches in different pea genetic backgrounds using near-isogenic lines

Clément Lavaud , Angélique Lesné , Christophe Piriou , Gwenola Le Roy , Gilles Boutet et al.
TAG Theoretical and Applied Genetics, 2015, 128 (11), pp.2273-2288. ⟨10.1007/s00122-015-2583-0⟩
Article dans une revue hal-01236551 v1

FRIZZY PANICLE drives supernumerary spikelets in bread wheat (T. aestivum L.)

Oxana Dobrovolskaya , Caroline Pont , Richard Sibout , Petr Martinek , Ekaterina Badaeva et al.
Plant Physiology, 2015, 167 (1), pp.189-199. ⟨10.1104/pp.114.250043⟩
Article dans une revue hal-01204099 v1

Using next-generation sequencing to detect mutations endowing resistance to pesticides: application to acetolactate-synthase (ALS)-based resistance in barnyard grass, a polyploid grass weed

Christophe C. Delye , Romain Causse , Véronique Gautier , Charles C. Poncet , Séverine S. Michel
Pest Management Science, 2015, 71 (5), pp.675- 685. ⟨10.1002/ps.3818⟩
Article dans une revue istex hal-02630714 v1

Common wheat chromosome 5B composition analysis using low-coverage 454 sequencing

E. M. Sergeeva , D. A. Afonnikov , M. K. Koltunova , V. D. Gusev , L. A. Miroshnichenko et al.
PLANT GENOME, 2014, 7 (2), 16 p. ⟨10.3835/plantgenome2013.10.0031⟩
Article dans une revue hal-02631101 v1

Improving the yellow pigment content of bread wheat flour by selecting the three homoeologous copies of Psy1

Catherine Ravel , Mireille M. Dardevet , Fanny F. Leenhardt , Jacques J. Bordes , Jean-Louis J.-L. Joseph et al.
Molecular Breeding, 2013, 31 (1), pp.87-99. ⟨10.1007/s11032-012-9772-1⟩
Article dans une revue istex hal-00964462 v1
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Isolation and Characterisation of 11 Polymorphic Microsatellite Markers in Papaver rhoeas L. (Corn Poppy), a Major Annual Plant Species from Cultivated Areas

Vaya V. Kati , Valérie V. Le Corre , Séverine S. Michel , Lydia L. Jaffrelo , Charles C. Poncet et al.
International Journal of Molecular Sciences, 2013, 14 (1), pp.470-479. ⟨10.3390/ijms14010470⟩
Article dans une revue hal-00964445 v1
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Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses

Bianca Dibari , Florent Murat , Audrey Chosson , Véronique Gautier , Charles C. Poncet et al.
BMC Genomics, 2012, 13 (1), pp.221. ⟨10.1186/1471-2164-13-221⟩
Article dans une revue hal-02285438 v1

Development of microsatellite markers in Capsella Rubella and Capsella Bursa-Pastoris (Brassicaceae) 1

Coraline C. Caullet , Fanny F. Pernin , Charles C. Poncet , Valérie V. Le Corre
American Journal of Botany, 2011, 98 (7), pp.e176-e179. ⟨10.3732/ajb.1100081⟩
Article dans une revue hal-00964329 v1

Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum)

Maud Petit , K.Yoong Lim , Emilie Julio , Charles C. Poncet , François Dorlhac de Borne et al.
Molecular Genetics and Genomics, 2007, 278 (1), pp.1-15. ⟨10.1007/s00438-007-0226-0⟩
Article dans une revue istex hal-02657177 v1

Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula

Stéphane de Mita , Joelle Ronfort , Heather Mckhann , Charles Poncet , Redouane El Malki et al.
Genetics, 2007, 177 (4), pp.2123-2133. ⟨10.1534/genetics.107.076943⟩
Article dans une revue hal-01189332 v1

Intake and digestive processes in the rumen of rams fed with Digitaria decumbens harvested at four stages of grass regrowth age

Caroline Assoumaya , Maryline Boval , Daniel Sauvant , Alain Xande , Charles Poncet et al.
Asian-Australasian journal of animal sciences, 2007, 20 (6), pp.925-932. ⟨10.5713/ajas.2007.925⟩
Article dans une revue hal-01186782 v1

Impacts d’événements démographiques et sélectifs sur la diversité des plantes cultivées: apports de l’analyse du polymorphisme alliée à la théorie de la coalescence

Thomas Bataillon , Nathalie N. Chantret , Alberto Cenci , Marie-Françoise Gautier , Philippe Joudrier et al.
Actes du BRG, 2006, 6, pp.243-257
Article dans une revue hal-02658975 v1
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GENOME-WIDE ASSOCIATION STUDY OF HYPOXIA STRESS TOLERANCE IN RAINBOW TROUT

Martin Prchal , Delphine Lallias , Henri Lagarde , Jonathan D’ambrosio , Pierre Patrice et al.
Aquaculture Europe 2021, Oct 2021, Funchal (Madeira), Portugal
Communication dans un congrès hal-03778912 v1

Genome wide association studies revealed one strong effect QTL for viral nervous necrosis resistance in European sea bass (Dicentrarchus labrax)

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen et al.
Aquaculture Europe 2020, Apr 2021, Cork, Ireland
Communication dans un congrès hal-03198222 v1

GWAS reveals several genomic regions governing spontaneous XX-maleness in rainbow trout

Clémence Fraslin , Anastasia Bestin , Nicolas Dechamp , Jonathan d'Ambrosio , Francine Krieg et al.
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany
Communication dans un congrès hal-02317177 v1

Masculinisation spontanée chez la truite arc-en-ciel : de nouvelles régions du génome identifiées

Clémence Fraslin , Anastasia Bestin , Nicolas Dechamp , Francine Krieg , Elodie Belmonte et al.
6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France
Communication dans un congrès hal-02182569 v1
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Sélection génétique pour la résistance aux maladies : projets et avancées

Mélanie Gunia , Merina Shrestha , Elodie Balmisse , Bertrand Bed'Hom , Stéphane Bertagnoli et al.
Journée Nationale d’Information des Professionnels du Lapin, Nov 2018, Cesson Sévigné, France
Communication dans un congrès hal-02788724 v1

Rapid identification of high-molecular-weight glutenin subunits by SNP markers to breed for high quality

Catherine Ravel , Annie Faye , Marion Ranoux Martel , Céline Dupuits , Mireille Dardevet et al.
Eucarpia Cereal Section - Breeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France
Communication dans un congrès hal-02340501 v1

Premiers résultats du projet RELAPA : génomique pour la résistance génétique des lapins à la pasteurellose

Mélanie Gunia , Frédéric Lantier , Jean-Marc Babilliot , Elodie Balmisse , Bertrand Bed'Hom et al.
17. Journées de la Recherche Cunicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Nov 2017, Le Mans, France. 205 p
Communication dans un congrès hal-01648183 v1

<i>Coxiella burnetii</i> circulation in a naturally infected flock of dairy sheep: shedding dynamics, environmental contamination, and genotype diversity

Aurélien Joulié , K. Sidi-Boumedine , Xavier Bailly , Patrick Gasqui , Séverine Barry et al.
MedVetNet sponsored Symposium: current findings in Q fever, Apr 2016, Brussels, Belgium. pp.16 slides
Communication dans un congrès hal-02743290 v1

Deciphering the genetic determinism of flowering/harvest period and several fruit sensory quality traits in apple by a Genome-Wide Association approach

Jorge Urrestarazu , Shigeki Moriya , Helene Muranty , Caroline Denance , Diane Leforestier et al.
8. International Rosaceae Genomics Conference, Institut National de Recherche Agronomique (INRA). UMR Institut de Recherche en Horticulture et Semences (1345)., Jun 2016, Angers, France
Communication dans un congrès hal-02741530 v1
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Effect of N source (soybean meal vs whole lupin) and of yeast addition on digestion and ruminal N metabolism in sheep

Michel M. Doreau , Sophie Laverroux , Frédérique Durand , Charles C. Poncet
3. EAAP International Symposium on Energy and Protein Metabolism and Nutrition, Sep 2010, Parma, Italy
Communication dans un congrès hal-02754258 v1

Impact of four decades of breeding on molecular differentiation between forage and turf cultivars of [i]Lolium perenne[/i]

Marc M. Ghesquière , Philippe P. Barre , Gilles Boutet , Isabelle I. Cameleyre , Sandrine S. Flajoulot et al.
28. Meeting of the Eucarpia fodder crops and amenity grasses section, Institut National de Recherche Agronomique (INRA). UR Unité de Recherche Pluridisciplinaire Prairies et Plantes Fourragères (0004)., May 2009, La Rochelle, France. pp.301-305, ⟨10.1007/978-90-481-8706-5_42⟩
Communication dans un congrès hal-00964157 v1

Effect of condensed tannins in sainfoin on in vitro protein solubility of lucerne as affected by the proportion of sainfoin in the mixture and the preserving conditions

Jocelyne J. Aufrere , Madeleine M. Dudilieu , Charles C. Poncet , René Baumont , Bertrand Dumont
11. Seminar of the FAO-CIHEAM Sub-Network on Sheep and Goat Nutrition, Sep 2005, Catania, Italy. pp.63-66
Communication dans un congrès hal-00964268 v1

Relations between ruminal and intestinal in sacco starch digestion in ruminants

Bruno B. Ramos , M. M. Champion , Charles C. Poncet , Michel M. Doreau , Pierre Noziere
Proceedings of the British Society of Animal Science, Apr 2007, Southport, United Kingdom. 1 p
Communication dans un congrès hal-00964366 v1

Identifying and isolating meiotic mutants in a polyploid brassica crop

Marina Pfalz , Adrián Gonzalo , Nicolas Christophorou , Aurélien Blary , Aurélie Berard et al.
Mónica Pradillo; Stefan Heckmann. Plant Meiosis : methods and protocols, 2061, Humana, 405 p., 2020, Methods in Molecular Biology, 978-1-4939-9817-3 ; 978-1-4939-9818-0. ⟨10.1007/978-1-4939-9818-0_21⟩
Chapitre d'ouvrage hal-02912375 v1