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Charles Poncet

59%
Libre accès
56
Documents
Affiliations actuelles
  • 577435
  • 1002427
  • 1063690
Identifiants chercheurs
Contact
Site web
  • https://gentyane.clermont.inrae.fr

Présentation

Je suis Ingénieur de Recherche INRAE et responsable de la plateforme de génomique Gentyane.

Domaines de recherche

Sciences du Vivant [q-bio]

Compétences

Génomique Management

Publications

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Whole‐genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass

Emilie Delpuech , Marc Vandeputte , Romain Morvezen , Anastasia Bestin , Mathieu Besson
Genetics Selection Evolution, 2023, 55, pp.30. ⟨10.1186/s12711-023-00805-2⟩
Article dans une revue hal-04116035v1
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The genomics of linkage drag in inbred lines of sunflower

Kaichi Huang , Mojtaba Jahani , Jérôme Gouzy , Alexandra Legendre , Sébastien Carrere
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (14), pp.e2205783119. ⟨10.1073/pnas.2205783119⟩
Article dans une revue hal-04198273v1
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Development of a High-Density 665 K SNP Array for Rainbow Trout Genome-Wide Genotyping

Maria Bernard , Audrey Dehaullon , Guangtu Gao , Katy Paul , Henri Lagarde
Frontiers in Genetics, 2022, 13, ⟨10.3389/fgene.2022.941340⟩
Article dans une revue hal-03725675v1

Identification of Fusarium wilt resistance loci in two major genetic backgrounds for oil palm breeding

Aurélie Daval , Virgine Pomiès , Jacques S.B. Dossa , Virginie Riou , David Lopez
Industrial Crops and Products, 2022, 187, pp.115291. ⟨10.1016/j.indcrop.2022.115291⟩
Article dans une revue hal-03869755v1
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Genome-wide association study and genomic prediction of tolerance to acute hypoxia in rainbow trout

M Prchal , Jonathan D’ambrosio , Henri Lagarde , Delphine Lallias , P Patrice
Aquaculture, 2022, 565, pp.739068. ⟨10.1016/j.aquaculture.2022.739068⟩
Article dans une revue hal-03944462v1
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Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral Cucurbitaceae karyotype

Clement Pichot , Anis Djari , Joseph Tran , Marion Verdenaud , William Marande
iScience, 2022, 25 (1), pp.103696. ⟨10.1016/j.isci.2021.103696⟩
Article dans une revue hal-03507170v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm
Molecular Ecology Resources, 2022, pp.1-18. ⟨10.1111/1755-0998.13620⟩
Article dans une revue hal-03652234v1
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Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen
Aquaculture, 2021, 530, pp.735930. ⟨10.1016/j.aquaculture.2020.735930⟩
Article dans une revue hal-03544239v1
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Introduction de gènes de résistance à la rouille couronnée dans la sélection française d’avoine (Avena sativa L.)

Paul Forgeois , Murielle Picot , Amélie Bertin , Jean-Michel Delhaye , Denis Louchart
Innovations Agronomiques, 2021, 84, pp.1-10. ⟨10.15454/dq5p-bb35⟩
Article dans une revue hal-03225440v1
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SNP markers for early identification of high molecular weight glutenin subunits (HMW-GSs) in bread wheat

Catherine Ravel , Annie Faye , Sarah Ben-Sadoun , Marion Ranoux , Mireille Dardevet
TAG Theoretical and Applied Genetics, 2020, 133 (3), pp.751-770. ⟨10.1007/s00122-019-03505-y⟩
Article dans une revue hal-02528930v1
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Harnessing the power of next‐generation sequencing technologies to the purpose of high‐throughput pesticide resistance diagnosis

Christophe Délye , Séverine Michel , Fanny Pernin , Véronique Gautier , Marie Gislard
Pest Management Science, 2020, 76 (2), pp.543-552. ⟨10.1002/ps.5543⟩
Article dans une revue hal-02553796v1

Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing

Clémence Fraslin , Florence Phocas , Anastasia Bestin , Mathieu Charles , Maria Bernard
Scientific Reports, 2020, 10, pp.1-13. ⟨10.1038/s41598-020-74757-8⟩
Article dans une revue hal-02988446v1
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Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding

Jonathan D’ambrosio , Florence Phocas , Pierrick Haffray , Anastasia Bestin , Sophie Brard-Fudulea
Genetics Selection Evolution, 2019, 51 (1), pp.26. ⟨10.1186/s12711-019-0468-4⟩
Article dans une revue hal-02151750v1

Genetic architecture of a plant adaptive trait: QTL mapping of intraspecific variation for tolerance to metal pollution in Arabidopsis halleri

Marie-Joe Karam , Dima Souleman , M. Sol Schvartzman , Sophie Gallina , Julien Spielmann
Heredity, 2019, 122 (6), pp.877-892. ⟨10.1038/s41437-019-0184-4⟩
Article dans une revue hal-02627989v1
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High throughput SNP discovery and genotyping in hexaploid wheat

Hélène Rimbert , Benoît Darrier , Julien Navarro , Jonathan Kitt , Frédéric Choulet
PLoS ONE, 2018, 13 (1), pp.1-19. ⟨10.1371/journal.pone.0186329⟩
Article dans une revue hal-02628543v1
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Allele-specific expression and genetic determinants of transcriptomic variations in response to mild water deficit in tomato

Elise Albert , Renaud Duboscq , Muriel Latreille , Sylvain Santoni , Matthieu Beukers
Plant Journal, 2018, 96 (3), pp.635-650. ⟨10.1111/tpj.14057⟩
Article dans une revue hal-02620940v1

Molecular epidemiology of Coxiella burnetii in French livestock reveals the existence of three main genotype clusters and suggests species-specific associations as well as regional stability

Aurélien Joulié , Karim Sidi-Boumedine , Xavier Bailly , Patrick Gasqui , Séverine Barry
Infection, Genetics and Evolution, 2017, 48, pp.142-149. ⟨10.1016/j.meegid.2016.12.015⟩
Article dans une revue hal-01608895v1
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Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple

Jorge Urrestarazu , Hélène Muranty , Caroline Denancé , Diane Leforestier , Elisa Ravon
Frontiers in Plant Science, 2017, 8 (8), pp.1923. ⟨10.3389/fpls.2017.01923⟩
Article dans une revue hal-01905260v1

Genome wide association study of two phenology traits (flowering time and maturity date) in apple

Helene Muranty , Jorge Urrestarazu , Caroline Denancé , Diane Leforestier , Elisa Ravon
Acta Horticulturae, 2017, 1172, pp.411-418. ⟨10.17660/ActaHortic.2017.1172.78⟩
Article dans une revue hal-02516683v1
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Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas.

Alexandre Pelé , Matthieu Falque , Gwenn Trotoux , Frederique Eber , Sylvie Negre
PLoS Genetics, 2017, 13 (5), pp.e1006794. ⟨10.1371/journal.pgen.1006794⟩
Article dans une revue hal-01607280v1

Development and validation of the Axiom (R) Apple480K SNP genotyping array

Luca Bianco , Alessandro Cestaro , Gareth Linsmith , Helene Muranty , Caroline Denance
Plant Journal, 2016, 86 (1), pp.62-74. ⟨10.1111/tpj.13145⟩
Article dans une revue hal-01482820v1

Genetic Diversity, Population Structure, Parentage Analysis, and Construction of Core Collections in the French Apple Germplasm Based on SSR Markers

Ludivine Lassois , Caroline Denance , Elisa Ravon , Arnaud Guyader , Remi Guisnel
Plant Molecular Biology Reporter, 2016, 34 (4), pp.827-844. ⟨10.1007/s11105-015-0966-7⟩
Article dans une revue hal-01374170v1

Exploiting the repetitive fraction of the wheat genome for high-throughput single-nucleotide polymorphism discovery and Genotyping

Nelly Cubizolles , Elodie Rey , Frédéric Choulet , Hélène Rimbert , Christel C. Laugier
PLANT GENOME, 2016, 9 (1), ⟨10.3835/plantgenome2015.09.0078⟩
Article dans une revue hal-02635405v1
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Analysis of the genetic diversity and structure across a wide range of germplasm reveals prominent gene flow in apple at the European level

Jorge Urrestarazu , Caroline Denance , Elisa Ravon , Arnaud Guyader , Remi Guisnel
BMC Plant Biology, 2016, 16 (article 130), 20 p. ⟨10.1186/s12870-016-0818-0⟩
Article dans une revue hal-01373529v1

Validation of QTL for resistance to Aphanomyces euteiches in different pea genetic backgrounds using near-isogenic lines

Clément Lavaud , Angélique Lesné , Christophe Piriou , Gwenola Le Roy , Gilles Boutet
TAG Theoretical and Applied Genetics, 2015, 128 (11), pp.2273-2288. ⟨10.1007/s00122-015-2583-0⟩
Article dans une revue hal-01236551v1

FRIZZY PANICLE drives supernumerary spikelets in bread wheat (T. aestivum L.)

Oxana Dobrovolskaya , Caroline Pont , Richard Sibout , Petr Martinek , Ekaterina Badaeva
Plant Physiology, 2015, 167 (1), pp.189-199. ⟨10.1104/pp.114.250043⟩
Article dans une revue hal-01204099v1

Using next-generation sequencing to detect mutations endowing resistance to pesticides: application to acetolactate-synthase (ALS)-based resistance in barnyard grass, a polyploid grass weed

Christophe C. Delye , Romain Causse , Véronique Gautier , Charles C. Poncet , Séverine S. Michel
Pest Management Science, 2015, 71 (5), pp.675- 685. ⟨10.1002/ps.3818⟩
Article dans une revue hal-02630714v1

Common wheat chromosome 5B composition analysis using low-coverage 454 sequencing

E. M. Sergeeva , D. A. Afonnikov , M. K. Koltunova , V. D. Gusev , L. A. Miroshnichenko
PLANT GENOME, 2014, 7 (2), 16 p. ⟨10.3835/plantgenome2013.10.0031⟩
Article dans une revue hal-02631101v1
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Isolation and Characterisation of 11 Polymorphic Microsatellite Markers in Papaver rhoeas L. (Corn Poppy), a Major Annual Plant Species from Cultivated Areas

Vaya V. Kati , Valérie V. Le Corre , Séverine S. Michel , Lydia L. Jaffrelo , Charles C. Poncet
International Journal of Molecular Sciences, 2013, 14 (1), pp.470-479. ⟨10.3390/ijms14010470⟩
Article dans une revue hal-00964445v1

Improving the yellow pigment content of bread wheat flour by selecting the three homoeologous copies of Psy1

Catherine Ravel , Mireille M. Dardevet , Fanny F. Leenhardt , Jacques J. Bordes , Jean-Louis J.-L. Joseph
Molecular Breeding, 2013, 31 (1), pp.87-99. ⟨10.1007/s11032-012-9772-1⟩
Article dans une revue hal-00964462v1
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Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses

Bianca Dibari , Florent Murat , Audrey Chosson , Véronique Gautier , Charles C. Poncet
BMC Genomics, 2012, 13 (1), pp.221. ⟨10.1186/1471-2164-13-221⟩
Article dans une revue hal-02285438v1

Development of microsatellite markers in Capsella Rubella and Capsella Bursa-Pastoris (Brassicaceae) 1

Coraline C. Caullet , Fanny F. Pernin , Charles C. Poncet , Valérie V. Le Corre
American Journal of Botany, 2011, 98 (7), pp.e176-e179. ⟨10.3732/ajb.1100081⟩
Article dans une revue hal-00964329v1

Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum)

Maud Petit , K.Yoong Lim , Emilie Julio , Charles C. Poncet , François Dorlhac de Borne
Molecular Genetics and Genomics, 2007, 278 (1), pp.1-15. ⟨10.1007/s00438-007-0226-0⟩
Article dans une revue hal-02657177v1

Investigation of the demographic and selective forces shaping the nucleotide diversity of genes involved in nod factor signaling in Medicago truncatula

Stéphane de Mita , Joelle Ronfort , Heather Mckhann , Charles Poncet , Redouane El Malki
Genetics, 2007, 177 (4), pp.2123-2133. ⟨10.1534/genetics.107.076943⟩
Article dans une revue hal-01189332v1

Intake and digestive processes in the rumen of rams fed with Digitaria decumbens harvested at four stages of grass regrowth age

Caroline Assoumaya , Maryline Boval , Daniel Sauvant , Alain Xande , Charles Poncet
Asian-Australasian journal of animal sciences, 2007, 20 (6), pp.925-932
Article dans une revue hal-01186782v1

Impacts d’événements démographiques et sélectifs sur la diversité des plantes cultivées: apports de l’analyse du polymorphisme alliée à la théorie de la coalescence

Thomas Bataillon , Nathalie N. Chantret , Alberto Cenci , Marie-Françoise Gautier , Philippe Joudrier
Actes du BRG, 2006, 6, pp.243-257
Article dans une revue hal-02658975v1

Identifying and isolating meiotic mutants in a polyploid brassica crop

Marina Pfalz , Adrián Gonzalo , Nicolas Christophorou , Aurélien Blary , Aurélie Berard
Mónica Pradillo; Stefan Heckmann. Plant Meiosis : methods and protocols, 2061, Humana, 405 p., 2020, Methods in Molecular Biology, 978-1-4939-9817-3 ; 978-1-4939-9818-0. ⟨10.1007/978-1-4939-9818-0_21⟩
Chapitre d'ouvrage hal-02912375v1
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GENOME-WIDE ASSOCIATION STUDY OF HYPOXIA STRESS TOLERANCE IN RAINBOW TROUT

Martin Prchal , Delphine Lallias , Henri Lagarde , Jonathan D’ambrosio , Pierre Patrice
Aquaculture Europe 2021, Oct 2021, Funchal (Madeira), Portugal
Communication dans un congrès hal-03778912v1

Genome wide association studies revealed one strong effect QTLfor viral nervous necrosis resistance in European sea bass (Dicentrarchus labrax)

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen
Aquaculture Europe 2020, Apr 2021, Cork, Ireland
Communication dans un congrès hal-03198222v1

GWAS reveals several genomic regions governing spontaneous XX-maleness in rainbow trout

Clémence Fraslin , Anastasia Bestin , Nicolas Dechamp , Jonathan d'Ambrosio , Francine Krieg
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany
Communication dans un congrès hal-02317177v1

Masculinisation spontanée chez la truite arc-en-ciel : de nouvelles régions du génome identifiées

Clémence Fraslin , Anastasia Bestin , Nicolas Dechamp , Francine Krieg , Elodie Belmonte
6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France
Communication dans un congrès hal-02182569v1
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Sélection génétique pour la résistance aux maladies : projets et avancées

Mélanie Gunia , Merina Shrestha , Elodie Balmisse , Bertrand Bed'Hom , Stéphane Bertagnoli
Journée Nationale d’Information des Professionnels du Lapin, Nov 2018, Cesson Sévigné, France
Communication dans un congrès hal-02788724v1

Rapid identification of high-molecular-weight glutenin subunits by SNP markers to breed for high quality

Catherine Ravel , Annie Faye , Marion Ranoux Martel , Céline Dupuits , Mireille Dardevet
Eucarpia Cereal Section - Breeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France
Communication dans un congrès hal-02340501v1

Premiers résultats du projet RELAPA : génomique pour la résistance génétique des lapins à la pasteurellose

Mélanie Gunia , Frédéric Lantier , Jean-Marc Babilliot , Elodie Balmisse , Bertrand Bed'Hom
17. Journées de la Recherche Cunicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Nov 2017, Le Mans, France. 205 p
Communication dans un congrès hal-01648183v1

Coxiella burnetii circulation in a naturally infected flock of dairy sheep: shedding dynamics, environmental contamination, and genotype diversity

Aurélien Joulié , K. Sidi-Boumedine , Xavier Bailly , Patrick Gasqui , Séverine Barry
MedVetNet sponsored Symposium: current findings in Q fever, Apr 2016, Brussels, Belgium. pp.16 slides
Communication dans un congrès hal-02743290v1

Deciphering the genetic determinism of flowering/harvest period and several fruit sensory quality traits in apple by a Genome-Wide Association approach

Jorge Urrestarazu , Shigeki Moriya , Helene Muranty , Caroline Denance , Diane Leforestier
8. International Rosaceae Genomics Conference, Institut National de Recherche Agronomique (INRA). UMR Institut de Recherche en Horticulture et Semences (1345)., Jun 2016, Angers, France
Communication dans un congrès hal-02741530v1
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Effect of N source (soybean meal vs whole lupin) and of yeast addition on digestion and ruminal N metabolism in sheep

Michel M. Doreau , Sophie Laverroux , Frédérique Durand , Charles C. Poncet
3. EAAP International Symposium on Energy and Protein Metabolism and Nutrition, Sep 2010, Parma, Italy
Communication dans un congrès hal-02754258v1

Impact of four decades of breeding on molecular differentiation between forage and turf cultivars of [i]Lolium perenne[/i]

Marc M. Ghesquière , Philippe P. Barre , Gilles Boutet , Isabelle I. Cameleyre , Sandrine S. Flajoulot
28. Meeting of the Eucarpia fodder crops and amenity grasses section, Institut National de Recherche Agronomique (INRA). UR Unité de Recherche Pluridisciplinaire Prairies et Plantes Fourragères (0004)., May 2009, La Rochelle, France. pp.301-305, ⟨10.1007/978-90-481-8706-5_42⟩
Communication dans un congrès hal-00964157v1

Relations between ruminal and intestinal in sacco starch digestion in ruminants

Bruno B. Ramos , M. M. Champion , Charles C. Poncet , Michel M. Doreau , Pierre Noziere
Proceedings of the British Society of Animal Science, Apr 2007, Southport, United Kingdom. 1 p
Communication dans un congrès hal-00964366v1

Effect of condensed tannins in sainfoin on in vitro protein solubility of lucerne as affected by the proportion of sainfoin in the mixture and the preserving conditions

Jocelyne J. Aufrere , Madeleine M. Dudilieu , Charles C. Poncet , René Baumont , Bertrand Dumont
11. Seminar of the FAO-CIHEAM Sub-Network on Sheep and Goat Nutrition, Sep 2005, Catania, Italy. pp.63-66
Communication dans un congrès hal-00964268v1