Charles Robert

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Publications

Image document

Tripeptide loop closure: a detailed study of reconstructions based on Ramachandran distributions

Timothee O'Donnell , Charles H Robert , Frédéric Cazals
Proteins - Structure, Function and Bioinformatics, 2022, 90 (3), pp.858-868. ⟨10.1002/prot.26281⟩
Article dans une revue hal-03232851 v1
Image document

Building Biological Relevance Into Integrative Modelling of Macromolecular Assemblies

Anne-Elisabeth Molza , Yvonne Westermaier , Magali Moutte , Pierre Ducrot , Claudia Danilowicz et al.
Frontiers in Molecular Biosciences, 2022, 9, pp.826136. ⟨10.3389/fmolb.2022.826136⟩
Article dans une revue hal-03826944 v1
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Modeling Perturbations in Protein Filaments at the Micro and Meso Scale using NAMD and PTools/Heligeom

Benjamin Boyer , Benoist Laurent , Charles H. Robert , Chantal Prévost
Bio-protocol , 2021, 11 (14), ⟨10.21769/BioProtoc.4097⟩
Article dans une revue hal-03365534 v1
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Reproducibility report: Estimating friction coefficients of mixed globular/chain molecules, such as protein/DNA complexes.

Charles Robert
The ReScience journal, 2020, ⟨10.5281/ZENODO.3886412⟩
Article dans une revue hal-02988870 v1

Mobility and core-protein binding patterns of disordered C-terminal tails in β-tubulin isotypes.

Yoann Laurin , Joël Eyer , Charles H. Robert , C Prévost , S. Sacquin-Mora
Biochemistry (mosc.), 2017, ⟨10.1021/acs.biochem.6b00988⟩
Article dans une revue hal-01497972 v1

Hybridizing Rapidly Exploring Random Trees and Basin Hopping Yields an Improved Exploration of Energy Landscapes

Christine A. Roth , Tom Dreyfus , Charles H. Robert , Frédéric Cazals
Journal of Computational Chemistry, 2016, 37, pp.752. ⟨10.1002/jcc.24256⟩
Article dans une revue istex hal-01497994 v1

Hybridizing rapidly growing random trees and basin hopping yields an improved exploration of energy landscapes

Andrea Roth , Tom Dreyfus , Charles H Robert , Frédéric Cazals
Journal of Computational Chemistry, 2016, 37 (8), pp.14
Article dans une revue hal-01423282 v1

Changes in protein structure at the interface accompanying complex formation.

Devlina Chakravarty , Joel Janin , Charles H. Robert , Pinak Chakrabarti
International Union of Crystallography journal, 2015, 2 (Pt 6), pp.643--652. ⟨10.1107/S2052252515015250⟩
Article dans une revue hal-01498035 v1

Investigating the Structural Variability and Binding Modes of the Glioma Targeting NFL-TBS.40-63 Peptide on Tubulin

Yoann Laurin , Philippe Savarin , Charles H Robert , Masayuki Takahashi , Joël Eyer et al.
Article dans une revue hal-01451181 v1

Conformational ensembles and sampled landscapes: analysis and comparison

Frédéric Cazals , Christine--Andrea Roth , Tom Dreyfus , Dorian Mazauric , Charles H. Robert
Journal of Computational Chemistry, 2015, 36, pp.1213--31. ⟨10.1002/jcc.23913⟩
Article dans une revue hal-01498027 v1
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An Integrative Approach to the Study of Filamentous Oligomeric Assemblies, with Application to RecA

Benjamin Boyer , Johann Ezelin , Pierre Poulain , Adrien Saladin , Martin Zacharias et al.
PLoS ONE, 2015, 10 (3), pp.e0116414. ⟨10.1371/journal.pone.0116414⟩
Article dans une revue hal-01230983 v1

Conformational Ensembles and Sampled Energy Landscapes: Analysis and Comparison

Frédéric Cazals , Tom Dreyfus , Dorian Mazauric , Andrea Roth , Charles Robert
Journal of Computational Chemistry, 2015, 36, 6, pp.18
Article dans une revue hal-01245395 v1

Reassessing buried surface areas in protein-protein complexes.

Devlina Chakravarty , Mainak Guharoy , Charles H. Robert , Pinak Chakrabarti , Joel Janin
Protein Sci., 2013, 22, pp.1453--57. ⟨10.1002/pro.2330⟩
Article dans une revue hal-01498068 v1
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Free Energy Profiles along Consensus Normal Modes Provide Insight into HIV-1 Protease Flap Opening

Paulo R Batista , Gaurav Pandey , Pedro G Pascutti , Paulo M Bisch , David Perahia et al.
Journal of Chemical Theory and Computation, 2011, 7 (8), pp.2348-2352. ⟨10.1021/ct200237u⟩
Article dans une revue hal-02988887 v1

Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.

Sarel J Fleishman , Timothy A Whitehead , Eva-Maria Strauch , Jacob E Corn , Sanbo Qin et al.
Journal of Molecular Biology, 2011, 414 (2), in press. ⟨10.1016/j.jmb.2011.09.031⟩
Article dans une revue inria-00637848 v1
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A Computational Study of a Recreated G Protein-GEF Reaction Intermediate Competent for Nucleotide Exchange: Fate of the Mg Ion

Mériam Ben Hamida-Rebaï , Charles Robert
PLoS ONE, 2010, 5 (2), pp.e9142. ⟨10.1371/journal.pone.0009142⟩
Article dans une revue hal-02988890 v1

Side-chain rotamer transitions at protein-protein interfaces

Mainak Guharoy , Joël Janin , Charles H. Robert
Proteins - Structure, Function and Bioinformatics, 2010, 78 (15), pp.3219-3225. ⟨10.1002/prot.22821⟩
Article dans une revue istex hal-02924964 v1
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Consensus modes, a robust description of protein collective motions from multiple-minima normal mode analysis—application to the HIV-1 protease

Paulo Ricardo Batista , Charles Robert , Jean-Didier Maréchal , Meriam Ben Hamida-Rebaï , Pedro Geraldo Pascutti et al.
Physical Chemistry Chemical Physics, 2010, 12 (12), pp.2850. ⟨10.1039/b919148h⟩
Article dans une revue istex hal-02988886 v1
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Role of Nucleic Acid Binding in Sir3p-Dependent Interactions with Chromatin Fibers

Nicholas L Adkins , Steve J Mcbryant , Cotteka N Johnson , Jennifer M Leidy , Christopher L Woodcock et al.
Biochemistry, 2009, 48 (2), pp.276-288. ⟨10.1021/bi801705g⟩
Article dans une revue hal-02988876 v1

Normal mode analysis as a prerequisite for drug design : application to Matrix Metalloproteinases inhibitors

N. Floquet , Marechal J.D. , Badet-Denisot M.A. , Robert C.H. , M. Dauchez et al.
FEBS Letters, 2006, 580, pp.5130-5136
Article dans une revue hal-00105805 v1

Normal mode analysis as a prerequisite for drug design : application to matrix metalloproteinases inhibitors.

N. Floquet , Jd. Marechal , Ma. Badet-Denisot , Ch. Robert , M. Dauchez et al.
FEBS Letters, 2006, 580(22), pp.5130-5136. ⟨10.1016/j.febslet.2006.08.037⟩
Article dans une revue istex hal-00109799 v1
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Odorant binding and conformational dynamics in the odorant binding protein

Eric Hajjar , David Perahia , Hélène Débat , Claude Nespoulous , Charles H. Robert
Journal of Biological Chemistry, 2006, 281 (40), pp.29929-29937. ⟨10.1074/jbc.M604869200⟩
Article dans une revue hal-02660896 v1

Integrating Three Views of Arf1 Activation Dynamics

Charles H. Robert , Jacqueline Cherfils , Liliane Mouawad , David Perahia
Journal of Molecular Biology, 2004, 337 (4), pp.969-983. ⟨10.1016/j.jmb.2004.01.052⟩
Article dans une revue istex hal-02924977 v1

Collective-variable Monte Carlo simulation of DNA

Henry A Gabb , C. Prevost , G. Bertucat , Ch Robert , Richard Lavery
Journal of Computational Chemistry, 1997, 18, pp.2001-2011
Article dans une revue hal-00314819 v1

Significance of bound water to local chain conformations in protein crystals.

Charles H. Robert , P. Shing Ho
Proceedings of the National Academy of Sciences of the United States of America, 1995, 92 (16), pp.7600-7604. ⟨10.1073/pnas.92.16.7600⟩
Article dans une revue hal-02925003 v1

Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy.

S. Leuba , Guoliang Yang , Charles Robert , B. Samori , K. van Holde et al.
Proceedings of the National Academy of Sciences of the United States of America, 1994, 91 (24), pp.11621-11625. ⟨10.1073/pnas.91.24.11621⟩
Article dans une revue hal-02925016 v1

Abstracts of the 28th International West Coast Chromatin and Chromosomes Conference

J Adam Hall , Nicholas L Adkins , Philippe T Georgel , Cotteka N Johnson , Charles Robert et al.
28th International West Coast Chromatin and Chromosomes Conference, Oct 2007, Asilomar, United States. pp.647-647, ⟨10.1139/O07-907⟩
Communication dans un congrès hal-02988882 v1

Simulations of aromatic ligand dissociation from a rat odorant binding protein

Eric Hajjar , Claude Nespoulous , Hélène Débat , David Perahia , Charles H. Robert
Biophysical Society 49th Annual Meeting, Feb 2005, Long Beach, California, United States. , pp.1 affiche, 2005
Poster de conférence hal-02832126 v1

Modeling macromolecular complexes: a journey across scales

Frédéric Cazals , Tom Dreyfus , Charles H. Robert
Modeling in Computational Biology and Biomedicine: A Multidisciplinary Endeavor, Springer-Verlag Berlin Heidelberg, 2013
Chapitre d'ouvrage hal-01498079 v1

Modeling Macro-molecular Complexes : a Journey Across Scales

Frédéric Cazals , Tom. Dreyfus , Charles H. Robert
Cazals, Frédéric and Kornprobst, Pierre. Modeling in Computational Biology and Medicine: : A Multidisciplinary Endeavor, Springer, pp.3-45, 2012, 978-3-642-31207-6 (Print) ; 978-3-642-31208-3 (Online). ⟨10.1007/978-3-642-31208-3_1⟩
Chapitre d'ouvrage istex hal-00849827 v1

Chapter 6: Receptor Flexibility in Ligand Docking and Virtual Screening.

Maria A. Miteva , Charles H. Robert , J. D. Marechal , David Perahia
In-silico lead discovery, Bentham Science Publishers, 2011
Chapitre d'ouvrage hal-01498123 v1