Christophe Pradal
Publications
Publications
Etat d'avancement du projet SILICOL : Définir un idéotype de colza apte à l'association, vigoureux et productif en conduite agroécologique par des approches de modélisation31ème Carrefour de la Sélection du Colza, Terres Inovia; SELEOPRO, Jan 2025, Bruz, France |
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Méta-modélisation des interactions plante-plante en 3D : application à l'association colza-féveroleJournées scientifiques 2025 du PEPR Agroécologie et Numérique, Agnès Redon, Institut Agro Dijon, Jan 2025, Dijon, France |
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How are local soil availability signals integrated through uptake and rhizodeposition for plastic root growth? The new Wheat-BRIDGES model approachJournées interdisciplinaires (Rhizos)PHARE, Réseau RhizosPHARE, Nov 2024, Rennes, France |
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Avancement du projet SILICOL : Définir un idéotype de colza apte à l'association, vigoureux et productif en conduite agroécologique par des approches de modélisation30ème Carrefour de la Sélection du Colza, SELEOPRO; Terres Inovia, Jan 2024, Bruz, France |
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Modelling carbon and nitrogen exchanges at the soil-root interface: from local exchanges to whole-plant architecture growth12. International Society of Root Research Symposium (ISRR 2024), International Society of Root Research; Helmholtz Centre for Environmental Research (UFZ); Rhizosphere Spatiotemporal Organisation (SPP 2089); Deutsche Forschungsgemeinschaft (DFG, German Research Foundation), Jun 2024, Leipzig, Germany. pp.31 |
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Meta-modelling of FSPMs to study plant-plant interactions in rapeseed and fababean mixtures: from plant to plot scaleWorkshop OpenAlea, Sep 2024, Montpellier, France |
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MaCS4Plants: A mathematic & computer science network for FSPMFSPM 2023 - 10. International Conference on Functional-Structural Plant Models, Thaer-Institute of Agricultural and Horticultural Sciences, Humboldt-University of Berlin, Mar 2023, Berlin, Germany. pp.52-53 |
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Quantitative importance of various rhizodeposition processes: lessons from a mechanistic functional-structural root modelFSPM 2023 - 10. International Conference on Functional-Structural Plant Models, Mar 2023, Berlin, Germany |
2D representation of the plant architecture in strawberry31. International Horticultural Congress (IHC2022): International Symposium on Water: a Worldwide Challenge for Horticulture!, S. McCallum; B. Denoyes, Aug 2022, Angers, France. pp.163-168, ⟨10.17660/ActaHortic.2023.1381.22⟩ |
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Hydroroot: a functional/structural model for assessing water and solute transport parametersWorkshop OpenAlea, 2023, Montpellier, France |
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How can local sugar concentrations in roots regulate the exchanges of C & N between shoots, roots and soil ?2nd Workshop Carbon Allocation in Plants : Advances in carbon allocation and acquisition, INRAE, Nov 2023, Versailles, France |
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Identification of shoot architectural traits to promote winter oilseed rape vigour during the vegetative growth: a simulation approachIRC 2023 - 16. International Rapeseed Congress, Sep 2023, Sydney, Australia |
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Data-intensive scientific workflows for model-assisted high-throughput phenotypingFSPM 2023 - 10. International Conference on Functional-Structural Plant Models, Mar 2023, Berlin, Germany. pp.XVI |
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High-throughput 2D+t root system architecture reconstruction and modelling from time-lapse phenotyping dataFSPM 2023 - 10. International Conference on Functional-Structural Plant Models, Mar 2023, Berlin, Germany. pp.62-63 |
MaCS4Plants: A mathematic & computer science network for FSPM10th International Conference on Functional-Structural Plant Models (FSPM2023), Thaer-Institute of Agricultural and Horticultural Sciences, Humboldt-University of Berlin, Mar 2023, Berlin, Germany |
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An automatic phenotyping pipeline to track maize organs over time7. International Plant Phenotyping Symposium (IPPS 2022), IPPN; WUR; NPEC, Sep 2022, Wageningen, Netherlands. pp.47 |
Présentation du projet SILICOL : Simuler l'association Colza-Féverole pour définir un idéotype de colza apte à l'association, vigoureux et productif en conduite agroécologique28ème Carrefour de la Sélection du Colza, SELEOPRO; Terres Inovia, Jan 2022, Visio Conférence, France |
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SigFlow, a functional-structural model simulating floral induction based on inhibiting and activating signais transport in apple tree 3D structuresInternational Symposium on Integrating Canopy, Rootstock and Environmental Physiology in Orchard Systems, Jul 2021, Wenatchee, United States. pp.75-82, ⟨10.17660/ActaHortic.2022.1346.10⟩ |
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Modelling the spatial and temporal evolution of rhizodeposition as a function of plant’s carbon balance and soil properties22. World Congress of Soil Science, Jul 2022, Glasgow, United Kingdom |
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Modelling plant growth and rhizodeposition based on the distribution of sugars within the plant1. Workshop Carbon Allocation in Plants, Sep 2021, Versailles, France |
Vers une modélisation mécaniste des interactions trophiques entre racines et microorganismes du solJournées Interdisciplinaires (Rhizos)PHARE 2021, Comité Scientifique d’Organisation du projet PHARE, Nov 2021, Sophia-Antipolis, France |
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RhizoDep: Modelling the contribution of roots to soil carbon dynamics using a 3D Functional-Structural Plant ModelEurosoil 2021, European Confederation of Soil Science Societies (ECSSS), Aug 2021, Genève, Switzerland |
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Distributed Caching of Scientific Workflows in Multisite CloudDEXA 2020 - 31st International Conference on Database and Expert Systems Applications, DEXA Society, Sep 2020, Bratislava, Slovakia. pp.51-65, ⟨10.1007/978-3-030-59051-2_4⟩ |
MTG as a standard representation of plants in FSPMsFSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Oct 2020, Online, Germany. pp.86-87 |
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RhizoDep - A 3D root functional model to simulate rhizodeposition processesiCROPM 2020 - Side event "Phenotyping and modeling of plant anchorage and physiology", Christophe Pradal, Feb 2020, Montpellier, France |
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Co-simulation with OpenAlea and GroIMP for cross-platform functional-structural plant modellingFSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Online, Germany. pp.97-98 |
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Toward Virtual Modelling Environments using Notebooks for Phenotyping and Simulation of Plant DevelopmentFSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Online, Germany. pp.99-100 |
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What structural plant modelling and image-based phenotyping can learn from each other?FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Online, Germany. pp.55-56 |
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Phenotyping and modeling of water transport in rootsiCROPM 2020 - Satellite workshop : Phenotyping and modeling of plant anchorage and physiology, Feb 2020, Montpellier, France |
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A 3D architectural model of grass shoot morphogenesis and plasticity, driven by organ metabolite concentrations and coordination rulesFSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Online, Germany |
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Toward virtual modelling environments using notebooks for phenotyping and simulation of plant developmentInternational Conference on Functional-Structural Plant Models (FSPM 2020), Hochschule Geisenheim University; University of Hannover, Oct 2020, s.l., Germany. pp.99-100 |
Improving interoperability between phenomics and modelling communities by designing a Plant Modelling Ontology (PMO)FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Online, Germany. pp.57-58 |
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Simulating rhizodeposition as a function of shoot and root interactions within a new 3D Functional-Structural Plant ModelFSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Oct 2020, Online, Germany. pp.22-23 |
Three-dimensional morphological model of water lilies Nymphaea spp. for breeding historical studyFSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Oct 2020, Online, Germany. pp.61-62 |
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A modelling framework for the simulation of signal transport within 3D structure: application for the simulation of within-tree variability in floral induction in apple treesFSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hannover, Germany. pp.16-17 |
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Modéliser la rhizodéposition pour mieux comprendre le cycle du carbone dans les systèmes sol-planteRoot Days 2019, Sep 2019, Rouen, France |
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Adaptive Caching for Data-Intensive Scientific Workflows in the CloudDEXA 2019 - 30th International Conference on Database and Expert Systems Applications, Aug 2019, Linz, Austria. pp.452-466, ⟨10.1007/978-3-030-27618-8_33⟩ |
Modelling wheat shoot morphogenesis at plant scale from organ-level metabolitesSociety of Experimental Biology Annual Main Meeting (SEB 2019), Society of Experimental Biology (SEB). GBR., Jul 2019, Seville, Spain |
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A new 3D shoot-root model for simulating rhizodeposition processes in the context of whole plant growthSociety of Experimental Biology Annual Main Meeting (SEB 2019), Jul 2019, Sevilla, Spain |
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CROP2ML: a crop modeling metalanguage shared between different crop simulation platformsSEB Annual Meeting (SEB 2019), Society of Experimental Biology, Jul 2019, Séville, Spain |
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The role of hydraulics FSPMs in the context of root breeding : a case study on Pearl MilletEGU: European Geosciences Union, Apr 2018, Vienne, Austria. pp.2018-19792 |
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An Architecture for the Integration of Different Functional and Structural Plant ModelsIEEA '18 - Proceedings of the 7th International Conference on Informatics, Environment, Energy and Applications, Mar 2018, Beijing, France. ⟨10.1145/3208854.3208875⟩ |
Towards a model of wheat leaf morphogenesis at plant scale driven by organ-level metabolites6. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA2018), Nov 2018, Hefei, China. 151 p., ⟨10.1109/PMA.2018.8611578⟩ |
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An architecture for the integration of different functional and structural plant models7. International Conference on Informatics, Environment, Energy and Applications IEEA '18, Mar 2018, Bejing, China |
Agricultural Model Exchange Initiative (AMEI)9th International Congress on Environmental Modelling and Software, Jun 2018, Fort Collins, United States |
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A multi-scale model to explore carbon allocation in plants10. International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France. pp.285 - 292, ⟨10.17660/ActaHortic.2017.1160.41⟩ |
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A Multi-Scale Model to explore Carbon Allocation in Plants10. International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France |
HydroShoot: a new FSPM model for simulating hydraulic structure and gas-exchange dynamics of complex plants canopies under water deficitIEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 60 p |
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Characterization of mango tree patchiness using a tree-segmentation/clustering approach2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. pp.68-74, ⟨10.1109/FSPMA.2016.7818290⟩ |
Genetic variability in light-related parameters of maize models revealed by linking 3D-reconstruction of plant architecture with light model and phenotyping platform2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China |
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Image workflows for high throughput phenotyping platformsBMVA technical meeting: Plants in Computer Vision, Nov 2016, London, United Kingdom |
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How does water flow through the rootsGordon Research Conferences “Salt & Water Stress in Plants, From Molecules to Crops”, May 2016, Les Diablerets, Switzerland |
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ECHAP : un projet pour identifier les possibilités de réduction de l’utilisation des fongicides en utilisant l’architecture des couverts45. Congrès du Groupe Français des Pesticides "Devenir et impact des pesticides : verrous à lever et nouveaux enjeux, May 2015, Versailles, France. 2 p |
A functional structural model of wheat leaf metabolism during extensionFSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, FSPMA 2016., Nov 2016, Qingdao, China |
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Reducing algorithm complexity in treesFSPMA 2016 - IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2016, Qingdao, China |
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HydroShoot: a new FSPM model for simulating hydraulic structure and gas-exchange dynamics of complex plants canopies under water deficit2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China |
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OpenAlea: Scientific Workflows Combining Data Analysis and SimulationSSDBM: Scientific and Statistical Database Management, Jun 2015, San Diego, United States. ⟨10.1145/2791347.2791365⟩ |
A Multi-Scale Model to explore Carbon Allocation in PlantsInternational Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France |
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Sensitivity analysis of light interception to geometrical traits of Apple trees: an in silico study based on MAppleT Model9. International Symposium on modelling in Fruit Research and Orchard management, International Society for Horticultural Science (ISHS). Louvain, INT., Jun 2011, Saint-Jean-Sur-Richelieu, Canada |
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Building a root hydraulic architecture with keyboard and pipettesModeling plant development from the organ to the whole plant scale, Apr 2015, montpellier, France |
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Multiscale topological and geometrical representation of plant architectureNimBIOS: Morphological Plant Models, Alexander Bucksch and Dan Chitwood, Sep 2015, Knoxville, United States |
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A generic model of interactions between FSPM, foliar pathogens and microclimate7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.339-341 |
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An integrated and modular model for simulating and evaluating how canopy architecture can help reduce fungicide applications7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.345-348 |
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OpenAlea 2.0: Architecture of an integrated modeling environment on the web7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.213 |
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Deciphering mango tree asynchronisms using Markov tree and probabilistic graphical modelsFSPM2013 - 7th International Workshop on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.210-212 |
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An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.85-87 |
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A Plastic, Dynamic and Reducible 3D Geometric Model for Simulating Gramineous LeavesInternational Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shanghai, China. pp.125-132 |
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Investigating the Influence of Geometrical Traits on Light Interception Efficiency of Apple Trees: a Modelling Study with MAppleTInternational Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shanghai, China. pp.152-159 |
Sensitivity Analysis of Light Interception to Geometrical Traits of Apple Trees: an in silico Study based on MAppleT model9th International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2011, Saint-Jean-sur-Richelieu, Canada |
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Scientific workflow for reusing plant/FSPM modelsMODSIM2011. 19th International Congress on Modelling and Simulation, Modelling and Simulation Society of Australia and New Zealand, Dec 2011, Perth, Australia. pp.968-974 |
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L-Py: L-Systems in PythonEuroSciPy 2011, 2011, Paris, France |
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Building modular FSPM under OpenAlea: concepts and applications6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.109-112 |
Feedbacks between plant microclimate and morphogenesis in fluctuating environment: analysis for rice using Ecomeristem model coupled with 3D plant and energy balance computation tools in OpenAlea platform.6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.123-125 |
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Modeling Strategies Using Visual Programming in OpenAlea6th International Workshop on Functional-Structural Plant Models, 2010, Davis, United States. pp.101-103 |
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L-Py, an open L-systems framework in Python6th International Workshop on Functional-Structural Plant Models, 2010, Davis, United States. pp.116-119 |
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Modelling of the airborne dispersal of a pathogen over a structured vegetal cover6. International Workshop on Functional-Structural Plant Models, Plant science department, UC Davis, Sep 2010, Davis, CA, United States. pp.50-52 |
Sharing efforts for modelling plant systems: from publications to reusable software componentsComparative Biochemistry and Physiology - Part A: Molecular& Integrative Physiology, 2009, Glasgow, United Kingdom. pp.S222, ⟨10.1016/j.cbpa.2009.04.549⟩ |
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Plant modelling with Python components in OpenAleaEuroSciPy 2009, 2009, Leipzig, Germany |
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OpenAlea: a visual programming and component-based software platform for plant modelling5th International Workshop on Functional Structural Plant Models, Nov 2007, Napier, New Zealand. pp.751-760, ⟨10.1071/fp08084⟩ |
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Modeling of light transmission under heterogeneous forest canopy: model description and validation5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.58, 1--4 |
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Compression progressive de modèles de plantes à base de cylindres généralisés20eme journées de l'Association Francophone d'Informatique Graphique, 2007, Marne-la-Vallée, France. pp.197-204 |
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OpenAlea: An open-source platform for the integration of heterogeneous FSPM componentsFSPM07 - 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.P36:1-2 |
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The architecture of OpenAlea: A visual programming and component based software for plant modeling5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.25, 1--4 |
OpenAlea : a platform for plant modelling, analysis and simulationPython Conference Europython, 2006, Genève, Switzerland. 16 p |
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Modelling directional anisotropy of thermal infrared measurements over a Pine forest canopy2. International Symposium on Recent Advances in Quantitative Remote Sensing (RAQRS'II), Sep 2006, Torrent, Spain |
ALEA: A software for integrating analysis and simulation tools for 3D architecture and ecophysiology4. International Workshop on Functional-Structural plant model, Jun 2004, Montpellier, France |
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VisuAlea, Towards a Scientific Modelling Environment using Visual ProgrammingEuroSciPy 2010, 2010, Paris, France. 2010 |
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Introduction to OpenAlea, a platform for plant modeling28th International Horticultural Congress, 2010, Lisbon, Portugal. 2010 |
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Openalea - visual programming and component based software for plant modelingEuroPython 2007, 2007, Vilnius, Lithuania. 2007 |
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ALEA: A software for integrating analysis and simulation tools for 3D architecture and ecophysiology4th International Workshop on Functional-Structural Plant Models, 2004, Montpellier, France. pp.406, 2004 |
Modelling C and N root-soil exchanges with 3D root and shoot growth based on plant ecophysiology: the Wheat-BRIDGES approachRhizosphere 6 - Rooting for Earth, Jun 2025, Edinburgh, United Kingdom. 2025 |
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SIMBAL: A structural-functional plant model to simulate C and N dynamics andshoot-root architecture of winter oilseed rape associated with legumesTsu-Wei Chen; Andreas Fricke; Katrin Kahlen; Susann Müller; Hartmut Stützel. FSPM 2023 - 10. International Conference on Functional-Structural Plant Models, Mar 2023, Berlin, Germany. 2023, Book of Abstracts of the 10th International Conference on Functional-Structural Plant Models |
GrapeInSilico: a modelling framework for building grapevine FSPMsFSPM 2023 - 10. International Conference on Functional-Structural Plant Models, Mar 2023, Berlin, Germany |
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Modélisation des effets de l’association d’espèces sur les interactions aérien/racinaireJournée annuelle du réseau Agroécologie du labEx BASC, Jan 2022, Paris, France |
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Using crop-pathogen modeling to identify plant traits to control Zymoseptoria tritici epidemics on wheatEUCARPIA Cereal section Meeting "Breeeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France. , 2018 |
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Multiscale Functional-Structural Plant Modelling at the Example of Apple TreesInternational Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016, ⟨10.1109/FSPMA.2016.7818281⟩ |
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Toward the inter-comparison of radiation transfert model for plant modelling applicationIEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, QingDao, China. |
Using combined virtual plant - pathogen models to compare the influence of wheat architecture on epidemics of two contrasted foliar fungiFSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, Nov 2016, Qingdao, China. FSPMA 2016, 2016 |
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Exploring carbon allocation with a multi-scale model: the case of appleInternational Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016 |
ECHAP : un projet pour identifier les possibilités de réduction de l’utilisation des fongicides en utilisant l’architecture des couverts45. Congrès du Groupe Français des Pesticides "Devenir et impact des pesticides : verrous à lever et nouveaux enjeux, May 2015, Versailles, France. 145 p., 2015, Devenir et impact des pesticides : verrous à lever et nouveaux enjeux |
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Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping dataIAMPS 2015 (International Workshop on Image Analysis Methods for the Plant Sciences), Sep 2015, Louvain-la-Neuve, Belgium. |
A generic model of interactions between FSPM, foliar pathogens, and microclimate7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013 |
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OpenAlea 2.0: Architecture of an integrated modeling environment on the web7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013 |
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The ECHAP project: Reducing fungicide use by associating optimal treatment strategies and canopies promoting disease escapePlant and Canopy Architecture Impact on Disease Epidemiology and Pest Development, Jul 2012, Rennes, France. , 2012 |
The architecture of OpenAlea: a visual programming and component based software for plant modelingpp.25, 2007 |
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Platform Migrator[Technical Report] TR2018-990, New York University. 2018, pp.43 |
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PlantGL : a Python-based geometric library for 3D plant modelling at different scales[Research Report] RR-6367, INRIA. 2007 |
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Architecture de dataflow pour des systèmes modulaires et génériques de simulation de planteModélisation et simulation. Université Montpellier, 2019. Français. ⟨NNT : 2019MONTS034⟩ |