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Establishing the ELIXIR Microbiome Community
Robert D Finn
,
Bachir Balech
,
Josephine Burgin
,
Physilia Chua
,
Erwan Corre
et al.
Article dans une revue
(article de synthèse)
hal-04796156
v1
|
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A model industrial workhorse: $Bacillus\ subtilis$ strain 168 and its genome after a quarter of a century
Erhard Bremer
,
Alexandra Calteau
,
Antoine Danchin
,
Colin Harwood
,
John D Helmann
et al.
Article dans une revue
cea-04284953
v1
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ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis
Alyssa Imbert
,
Magali Rompais
,
Mohammed Selloum
,
Florence Castelli
,
Emmanuelle Mouton-Barbosa
et al.
Article dans une revue
pasteur-03453736
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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
Guillaume Gautreau
,
Adelme Bazin
,
Mathieu Gachet
,
Rémi Planel
,
Laura Burlot
et al.
Article dans une revue
hal-03089210
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TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages
Daria Bottai
,
Wafa Frigui
,
Fadel Sayes
,
Mariagrazia Di Luca
,
Dalila Spadoni
et al.
Article dans une revue
pasteur-02473990
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panRGP: a pangenome-based method to predict genomic islands and explore their diversity
Adelme Bazin
,
Guillaume Gautreau
,
Claudine Médigue
,
David Vallenet
,
Alexandra Calteau
Article dans une revue
hal-03322363
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Ancestral state reconstruction of metabolic pathways across pangenome ensembles
Fotis Psomopoulos
,
Jacques van Helden
,
Claudine Médigue
,
Anastasia Chasapi
,
Christos Ouzounis
Article dans une revue
hal-03089213
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Specialization of small non-conjugative plasmids in Escherichia coli according to their family types
Catherine Branger
,
Alice Ledda
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Typhaine Billard-Pomares
,
Benoît Doublet
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Valérie Barbe
et al.
Article dans une revue
hal-02403160
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The Arginine Deiminase Operon Is Responsible for a Fitness Trade-Off in Extended-Spectrum-β-Lactamase-Producing Strains of Escherichia coli
Typhaine Billard-Pomares
,
Olivier Clermont
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Miguel Castellanos
,
Fatma Magdoud
,
Guilhem Royer
et al.
Article dans une revue
hal-04283183
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The Arginine Deiminase Operon Is Responsible for a Fitness Trade-Off in Extended-Spectrum--Lactamase-Producing Strains of Escherichia coli
Typhaine Billard-Pomares
,
Olivier P Clermont
,
Miguel Castellanos
,
Fatma Magdoud
,
Guilhem Royer
et al.
Article dans une revue
hal-02413136
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The arginine deiminase operon is responsible for a fitness trade-off in extended-spectrum-beta-lactamase-producing strains of Escherichia coli
Typhaine Billard-Pomares
,
Olivier Clermont
,
Miguel Castellanos
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Fatma Magdoud
,
Guilhem Royer
et al.
Article dans une revue
cea-04307623
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis
David Vallenet
,
Alexandra Calteau
,
Mathieu Dubois
,
Paul Amours
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Adelme Bazin
et al.
Article dans une revue
hal-02403170
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MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data
Claudine Médigue
,
Alexandra Calteau
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Stéphane Cruveiller
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Mathieu Gachet
,
Guillaume Gautreau
et al.
Article dans une revue
hal-02626039
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PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level
G. Royer
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J. W. Decousser
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C. Branger
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M. Dubois
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C. Medigue
et al.
Article dans une revue
cea-02291353
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GROOLS: reactive graph reasoning for genome annotation through biological processes
Jonathan Mercier
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Adrien Josso
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Claudine Medigue
,
David Vallenet
Article dans une revue
cea-04313474
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The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification
M. Desroches
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G. Royer
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D. Roche
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M. Mercier-Darty
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D. Vallenet
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Article dans une revue
hal-04283164
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Extended-spectrum b-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins
Catherine Branger
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Alice Ledda
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Typhaine Billard-Pomares
,
Benoît Doublet
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Stéphanie Fouteau
et al.
Article dans une revue
hal-02403119
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Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation
Evelyne Krin
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Sebastian Aguilar Pierlé
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Odile Sismeiro
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Bernd Jagla
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Marie-Agnès Dillies
et al.
Article dans une revue
pasteur-02562431
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Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs
Graciela M. Dias
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Adeline Bidault
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Patrick Le Chevalier
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Gwenaëlle Choquet
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Clio Der Sarkissian
et al.
Article dans une revue
hal-02177600
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Bacillus subtilis, the model Gram-positive bacterium: 20years of annotation refinement
Rainer Borriss
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Antoine Danchin
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Colin R. Harwood
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Claudine Médigue
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Eduardo P. C. Rocha
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Article dans une revue
cea-02291345
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Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis
Karine Bastard
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Alain Perret
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Aline Mariage
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Thomas Bessonnet
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Agnès Pinet-Turpault
et al.
Article dans une revue
cea-02132779
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MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes
David Vallenet
,
Alexandra Calteau
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Stéphane Cruveiller
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Mathieu Gachet
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Aurélie Lajus
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Article dans une revue
cea-04320303
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Genome Sequence of the Dichloromethane-Degrading Bacterium Hyphomicrobium sp. Strain GJ21
Françoise Bringel
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Christiaan Postema
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Sophie Mangenot
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Sabrina Bibi-Triki
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Pauline Chaignaud
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Article dans une revue
hal-02328278
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Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria
Elizabeth Ficko-Blean
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François Thomas
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Tatiana Rochat
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Robert Larocque
et al.
Article dans une revue
hal-01899178
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Complete Genome Sequence of Bacillus methylotrophicus Strain B25, a Potential Plant Growth-Promoting Rhizobacterium
Jonathan Gerbore
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Aline Brutel
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Arnaud Lemainque
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Barbara Mairey
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Claudine Medigue
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Article dans une revue
cea-04541792
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RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori
Yulia Redko
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Eloïse Galtier
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Hélène Arnion
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Fabien Darfeuille
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Odile Sismeiro
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Article dans une revue
cea-04541794
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The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.
Boyang Ji
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Sheng-Da Zhang
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Wei-Jia Zhang
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Zoe Rouy
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François Alberto
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Article dans une revue
hal-01410134
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Comparative genomics between two Xenorhabdus bovienii strains highlights differential evolutionary scenarios within an entomopathogenic bacterial species
Gaelle Bisch
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Jean-Claude Ogier
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Claudine Médigue
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Zoé Rouy
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Stéphanie Vincent
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Article dans une revue
hal-01837293
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The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
Eugeni Belda
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Ruben G. A. Van Heck
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Maria José Lopez-Sanchez
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Stéphane Cruveiller
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Valérie Barbe
et al.
Article dans une revue
cea-04541789
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Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria
Jessica Plucain
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Antonia Suau
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Stéphane Cruveiller
,
Claudine Médigue
,
Dominique Schneider
et al.
Article dans une revue
hal-01653387
v1
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Tempo and mode of genome evolution in a 50,000-generation experiment
Olivier Tenaillon
,
Jeffrey E. Barrick
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Noah Ribeck
,
Daniel E. Deatherage
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Jeffrey L. Blanchard
et al.
Article dans une revue
hal-01653393
v1
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Draft Genome Sequence of Carnobacterium divergens V41, a Bacteriocin-Producing Strain
Benoit Remenant
,
Frederic Borges
,
Catherine Cailliez-Grimal
,
Anne-Marie Revol-Junelles
,
Laurent Marché
et al.
Article dans une revue
hal-02498294
v1
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Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.
Sheng-Da Zhang
,
Claire-Lise Santini
,
Wei-Jia Zhang
,
Valérie Barbe
,
Sophie Mangenot
et al.
Article dans une revue
hal-01410136
v1
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Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment
Rohan Maddamsetti
,
Philip J. Hatcher
,
Stéphane Cruveiller
,
Claudine Medigue
,
Jeffrey E. Barrick
et al.
Article dans une revue
cea-04573295
v1
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16S rRNA and As-Related Functional Diversity: Contrasting Fingerprints in Arsenic-Rich Sediments from an Acid Mine Drainage
Anne Fahy
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L. Giloteaux
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Philippe N. Bertin
,
D. Le Paslier
,
C. Médigue
et al.
Article dans une revue
hal-01631845
v1
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A new network representation of the metabolism to detect chemical transformation modules
Maria Sorokina
,
Claudine Medigue
,
David Vallenet
Article dans une revue
cea-04573300
v1
|
|
Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant
T. Persson
,
K. Battenberg
,
I. V. Demina
,
T. Vigil-Stenman
,
B. Vanden Heuvel
et al.
Article dans une revue
hal-02487299
v1
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Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii
Jean-Claude Ogier
,
Sylvie Pages
,
Gaelle Bisch
,
Helene Chiapello
,
Claudine Médigue
et al.
Article dans une revue
hal-01837258
v1
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Profiling the orphan enzymes
Maria Sorokina
,
Mark Stam
,
Claudine Médigue
,
Olivier Lespinet
,
David Vallenet
Article dans une revue
(article de synthèse)
hal-04011158
v1
|
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Characterization of a P1-Like Bacteriophage Carrying an SHV-2 Extended-Spectrum β-Lactamase from an Escherichia coli Strain
Typhaine Billard-Pomares
,
Stéphanie Fouteau
,
Marie Elise Jacquet
,
David Roche
,
Valérie Barbe
et al.
Article dans une revue
hal-04575101
v1
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Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease
Laura Gomez-Valero
,
Christophe Rusniok
,
Monica Rolando
,
Mario Neou
,
Delphine Dervins-Ravault
et al.
Article dans une revue
hal-01329875
v1
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Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style?
Martha E Trujillo
,
Rodrigo Bacigalupe
,
Petar Pujic
,
Yasuhiro Igarashi
,
Patricia Benito
et al.
Article dans une revue
hal-04576462
v1
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Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain
Boyang Ji
,
Sheng-Da Zhang
,
Pascal Arnoux
,
Zoe Rouy
,
François Alberto
et al.
Article dans une revue
istex
hal-02463127
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Revealing the hidden functional diversity of an enzyme family
Karine Bastard
,
Adam Alexander Thil Smith
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Carine Vergne-Vaxelaire
,
Alain Perret
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Anne Zaparucha
et al.
Article dans une revue
hal-02504067
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Large Chromosomal Rearrangements during a Long-Term Evolution Experiment with Escherichia coli
C. Raeside
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J. Gaffé
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D. Deatherage
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O. Tenaillon
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A. Briska
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Article dans une revue
hal-01980589
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Characterization of a P1-like bacteriophage encoding an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain.
T. Billard-Pomares,
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S. Fouteau
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M.E. Jacquet
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D. Roche,
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V. Barbe,
et al.
Antimicrobial Agents and Chemotherapy, 2014, 58 (11), pp.6550-7
Article dans une revue
hal-01117145
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Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms
Pablo Ivan Pereira Ramos
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Renata Christina Picão
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Luiz Gonzaga Paula de Almeida
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Nicholas Costa B Lima
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Raquel Girardello
et al.
Article dans une revue
cea-04646589
v1
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Epistasis and Allele Specificity in the Emergence of a Stable Polymorphism in Escherichia coli.
Jessica Plucain
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Thomas Hindré
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Mickaël Le Gac
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Olivier Tenaillon
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Stéphane Cruveiller
et al.
Article dans une revue
hal-00961496
v1
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Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load.
Sébastien Wielgoss
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Olivier Tenaillon
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Michael J Wiser
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W James Dittmar
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Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (1), pp.222-7. ⟨10.1073/pnas.1219574110⟩
Article dans une revue
hal-00800700
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Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.
Jérémy Andres
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Florence Arsène-Ploetze
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Valérie Barbe
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Céline Brochier-Armanet
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Jessica Cleiss-Arnold
et al.
Article dans une revue
hal-00972245
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Genome sequence of the obligate gammaproteobacterial methanotroph Methylomicrobium album strain BG8.
K Dimitri Kits
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Marina G Kalyuzhnaya
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Martin G Klotz
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Mike S M Jetten
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Huub J M Op den Camp
et al.
Article dans une revue
hal-00880898
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Genome Sequence of the Sulfate-Reducing Bacterium Desulfotomaculum hydrothermale Lam5(T).
Oulfat Amin
,
Marie-Laure Fardeau
,
Odile Valette
,
Agnès Hirschler-Réa
,
Valérie Barbe
et al.
Article dans une revue
hal-00807485
v1
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Evolutionary history and genetic parallelism affect correlated responses to evolution.
Mickael Le Gac
,
Tim F Cooper
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Stéphane Cruveiller
,
Claudine Médigue
,
Dominique Schneider
Article dans une revue
hal-00961479
v1
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A Tribute to Disorder in the Genome of the Bloom- Forming Freshwater Cyanobacterium Microcystis aeruginosa
Jean-François Humbert
,
Valérie Barbe
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Amel Latifi
,
Muriel Gugger
,
Alexandra Calteau
et al.
Article dans une revue
bioemco-00851371
v1
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Sinorhizobium strains comprising five genospecies
Masayuki Sugawara
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Brendan Epstein
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Brian Badgley
,
Tatsuya Unno
,
Lei Xu
et al.
Article dans une revue
cea-04669820
v1
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An updated metabolic view of the Bacillus subtilis 168 genome
Eugeni Belda
,
Agnieszka Sekowska
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François Le Fèvre
,
Anne Morgat
,
Damien Mornico
et al.
Article dans une revue
hal-04578023
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Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits
David Goudenège
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Yannick Labreuche
,
Evelyne Krin
,
Dominique Ansquer
,
Sophie Mangenot
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The International Society of Microbiologial Ecology Journal, 2013, Integrated genomics and post-genomics approaches in microbial ecology, 7 (10), pp.1985-1996. ⟨10.1038/ismej.2013.90⟩
Article dans une revue
pasteur-01699814
v1
|
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Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis
Philip Supply
,
Michael Marceau
,
Sophie Mangenot
,
David Roche
,
Carine Rouanet
et al.
Article dans une revue
pasteur-02615220
v1
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Experimental evolution of nodule intracellular infection in legume symbionts
Suhua Guan
,
Carine Gris
,
Stéphane Cruveiller
,
Cecile Pouzet
,
Lena Tasse
et al.
Article dans une revue
hal-02646600
v1
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The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes.
Adam Alexander Thil Smith
,
Eugeni Belda
,
Alain Viari
,
Claudine Médigue
,
David Vallenet
Article dans une revue
hal-00763496
v1
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Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC
Stefan Engelen
,
David Vallenet
,
Claudine Médigue
,
Antoine Danchin
Article dans une revue
hal-04579011
v1
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Genome Sequence of Radiation-Resistant Modestobacter marinus Strain BC501, a Representative Actinobacterium That Thrives on Calcareous Stone Surfaces
Philippe Normand
,
Jérome Gury
,
Petar Pujic
,
B. Chouaia
,
E. Crotti
et al.
Article dans une revue
hal-02531835
v1
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Complete genome sequences of six strains of the genus Methylobacterium.
Christopher J Marx
,
Françoise Bringel
,
Ludmila Chistoserdova
,
Lionel Moulin
,
Muhammad Farhan Ul Haque
et al.
Article dans une revue
hal-00749347
v1
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Genome Sequence of Blastococcus saxobsidens DD2, a Stone-Inhabiting Bacterium
B. Chouaia
,
E. Crotti
,
L. Brusetti
,
D. Daffonchio
,
I. Essoussi
et al.
Article dans une revue
hal-02532799
v1
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MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
David Vallenet
,
Eugeni Belda
,
Alexandra Calteau
,
Stéphane Cruveiller
,
Stefan Engelen
et al.
Article dans une revue
hal-04578153
v1
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Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z.
Stéphane Vuilleumier
,
Valentina N Khmelenina
,
Françoise Bringel
,
Alexandr S Reshetnikov
,
Aurélie Lajus
et al.
Article dans une revue
hal-00749350
v1
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Comparative Genomics of Aeschynomene Symbionts: Insights into the Ecological Lifestyle of Nod-Independent Photosynthetic Bradyrhizobia
Damien Mornico
,
Lucie Miche
,
Gilles Bena
,
Nico Nouwen
,
Andre Vermeglio
et al.
Article dans une revue
hal-01791870
v1
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Sequencing of K60, Type Strain of the Major Plant Pathogen Ralstonia solanacearum
Benoit Remenant
,
Lavanya Babujee
,
Aurélie Lajus
,
Claudine Medigue
,
Philippe Prior
et al.
Article dans une revue
hal-02645685
v1
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Draft Genome Sequence of the Volcano-Inhabiting Thermoacidophilic Methanotroph Methylacidiphilum fumariolicum Strain SolV
Ahmad F Khadem
,
Adam S Wieczorek
,
Arjan Pol
,
Stéphane Vuilleumier
,
Harry R Harhangi
et al.
Article dans une revue
hal-04578787
v1
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Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta-and proteo-genomics
P.N. Bertin
,
A. Heinrich-Salmeron
,
E. Pelletier
,
F. Goulhen-Chollet
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F. Arsène-Ploetze
et al.
Article dans une revue
hal-01631857
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Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).
Lisa y Stein
,
Françoise Bringel
,
Alan A Dispirito
,
Sukkyun Han
,
Mike S M Jetten
et al.
Article dans une revue
hal-00644085
v1
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Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1.
Stéphane Vuilleumier
,
Thierry Nadalig
,
Muhammad Farhan Ul Haque
,
Ghislaine Magdelenat
,
Aurélie Lajus
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Article dans une revue
hal-00644071
v1
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Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales.
Weerayuth Kittichotirat
,
Nathan M Good
,
Rob Hall
,
Françoise Bringel
,
Aurélie Lajus
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Article dans une revue
hal-00644081
v1
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Genome sequence of the arctic methanotroph Methylobacter tundripaludum SV96.
Mette M Svenning
,
Anne Grethe Hestnes
,
Ingvild Wartiainen
,
Lisa y Stein
,
Martin G Klotz
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Article dans une revue
hal-00644077
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The entomopathogenic bacterial endosymbionts xenorhabdus and photorhabdus: convergent lifestyles from divergent genomes
John M. Chaston
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Garret Suen
,
Sarah L. Tucker
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Aaron W. Andersen
,
Archna Bhasin
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Article dans une revue
hal-02647677
v1
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Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli.
Sébastien Wielgoss
,
Jeffrey E Barrick
,
Olivier Tenaillon
,
Stéphane Cruveiller
,
Béatrice Chane-Woon-Ming
et al.
Article dans une revue
hal-00800695
v1
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Reannotation of the genome sequence of Clostridium difficile strain 630.
Marc Monot
,
Caroline Boursaux-Eude
,
Marie Thibonnier
,
David Vallenet
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Ivan Moszer
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Article dans une revue
pasteur-01370838
v1
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Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles
Benoît Remenant
,
Jean-Charles de Cambiaire
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hal-04579060
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Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes
Laura Gomez-Valero
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pasteur-00642457
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Parallel Evolution of a Type IV Secretion System in Radiating Lineages of the Host-Restricted Bacterial Pathogen Bartonella
Philipp Engel
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Article dans une revue
hal-04580576
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Complete Nucleotide Sequence of Plasmid pTN48, Encoding the CTX-M-14 Extended-Spectrum β-Lactamase from an <i>Escherichia coli</i> O102-ST405 Strain
Typhaine Billard-Pomares
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Article dans une revue
hal-04579228
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Core and Panmetabolism in Escherichia coli
Gilles Vieira
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Article dans une revue
hal-02646830
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Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence
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Article dans une revue
hal-02936853
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The Complete Genome Sequence of Cupriavidus metallidurans Strain CH34, a Master Survivalist in Harsh and Anthropogenic Environments
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hal-04580603
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Structure, function, and evolution of the Thiomonas spp. genome.
Florence Arsène-Ploetze
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hal-00463879
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Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, <em>Photorhabdus</em> and <em>Xenorhabdus</em>
Jean-Claude Ogier
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hal-02660280
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Complete genome sequence of Crohn's disease-associated adherent-invasive E. coli strain LF82.
Sylvie Miquel
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Article dans une revue
hal-00529639
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Experimental Evolution of a Plant Pathogen into a Legume Symbiont
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Article dans une revue
hal-02665813
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Delineation and Analysis of Chromosomal Regions Specifying Yersinia pestis
Anne Derbise
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pasteur-03260318
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The Frankia alni Symbiotic Transcriptome
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Molecular Plant-Microbe Interactions, 2010, 23 (5), pp.593-607. ⟨10.1094/MPMI⟩
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hal-00599356
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Genome Sequence of the Obligate Methanotroph Methylosinus trichosporium Strain OB3b.
Lisa y Stein
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hal-00542790
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Genomic, proteomic, and transcriptomic analysis of virulent and avirulent<i>Rickettsia prowazekii</i>reveals its adaptive mutation capabilities
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hal-04580605
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Small variable segments constitute a major type of diversity of bacterial genomes at the species level.
Fabrice Touzain
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Article dans une revue
inserm-00622573
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From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma.
Jean-Michel Thiberge
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Article dans une revue
pasteur-00668206
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The Genome Sequence of the Cyanobacterium Oscillatoria sp. PCC 6506 Reveals Several Gene Clusters Responsible for the Biosynthesis of Toxins and Secondary Metabolites
Annick Méjean
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Article dans une revue
hal-04580588
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Genome sequence of Vibrio splendidus : an abundant planctonic marine species with a large genotypic diversity
Frédérique Le Roux
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Article dans une revue
hal-04581544
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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.
Marie Touchon
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hal-00390293
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From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later
Valérie Barbe
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Article dans une revue
hal-04581597
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MicroScope: a platform for microbial genome annotation and comparative genomics
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hal-04581832
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A Module Located at a Chromosomal Integration Hot Spot Is Responsible for the Multidrug Resistance of a Reference Strain from Escherichia coli Clonal Group A
Mathilde Lescat
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Article dans une revue
hal-03612468
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NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis
Christophe Rusniok
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Article dans une revue
pasteur-00663857
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Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data.
Stéphanie Weiss
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Article dans une revue
istex
hal-00370778
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Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations
Ravi D. Barabote
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Article dans une revue
halsde-00526039
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Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources
Stéphane Vuilleumier
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hal-00390607
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The Plasmid of <i>Escherichia coli</i> Strain S88 (O45:K1:H7) That Causes Neonatal Meningitis Is Closely Related to Avian Pathogenic <i>E. coli</i> Plasmids and Is Associated with High-Level Bacteremia in a Neonatal Rat Meningitis Model
Chantal Peigne
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Article dans une revue
hal-04581643
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A complete collection of single‐gene deletion mutants of Acinetobacter baylyi ADP1
Véronique de Berardinis
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hal-02503013
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Breathing cardiovascular variability and baroreflex in mechanically ventilated patients
A. van de Louw
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Article dans une revue
hal-02489936
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“ Candidatus Cloacamonas Acidaminovorans”: Genome Sequence Reconstruction Provides a First Glimpse of a New Bacterial Division
Eric Pelletier
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Article dans une revue
hal-04582001
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Genome Sequence of the Saprophyte Leptospira biflexa Provides Insights into the Evolution of Leptospira and the Pathogenesis of Leptospirosis
Mathieu Picardeau
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hal-03020737
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Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems
Philippe N. Bertin
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Article dans une revue
(article de synthèse)
halsde-00254466
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Effect of heavy exercise on spectral baroreflex sensitivity, heart rate, and blood pressure variability in well-trained humans
F. Cottin
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Article dans une revue
hal-02489960
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Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems.
Philippe N Bertin
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Claudine Médigue
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Article dans une revue
hal-00370781
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Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
Marie-Laure Rosso
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Article dans une revue
inserm-02064904
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Genome sequence of the -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia
Claire Amadou
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Article dans une revue
hal-01655676
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Comparative analysis of acinetobacters: three genomes for three lifestyles
David Vallenet
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Article dans une revue
cea-04585511
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A tale of two oxidation states: bacterial colonization of arsenic-rich environments.
Daniel Muller
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Article dans une revue
hal-00340034
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Annotation, comparison and databases for hundreds of bacterial genomes
Claudine Médigue
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Article dans une revue
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cea-04585543
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Ventilatory thresholds assessment from heart rate variability during an incremental exhaustive running test.
F. Cottin
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hal-00306354
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A Genomic Island of the Pathogen Leptospira interrogans Serovar Lai Can Excise from Its Chromosome
Pascale Bourhy
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Article dans une revue
cea-04586169
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Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia
Eric Giraud
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Article dans une revue
halsde-00151340
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Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
Philippe Normand
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Article dans une revue
halsde-00140365
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Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague
Sylvie Chauvaux
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Article dans une revue
pasteur-03252353
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A New O-Antigen Gene Cluster Has a Key Role in the Virulence of the Escherichia coli Meningitis Clone O45:K1:H7
Céline Plainvert
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Article dans une revue
cea-04585566
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Identification of the Last Unknown Genes in the Fermentation Pathway of Lysine
Annett Kreimeyer
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Article dans une revue
hal-02502995
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Exploring the genomes of Frankia
Philippe Normand
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Article dans une revue
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halsde-00156095
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Frankia alni proteome under nitrogen-fixing and nitrogen-replete conditions
Nicole Alloisio
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Article dans une revue
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halsde-00156090
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Persistent biases in the amino acid composition of prokaryotic proteins
Géraldine Pascal
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Article dans une revue
istex
hal-02985564
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Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila.
Nicolas Vodovar
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Article dans une revue
hal-00133119
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Comparative and Functional Genomic Analyses of Iron Transport and Regulation in Leptospira spp
H. Louvel
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Article dans une revue
cea-04586222
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Assessment of ventilatory thresholds from heart rate variability in well-trained subjects during cycling.
F. Cottin
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International Journal of Sports Medicine, 2006, 27 (12), pp.959-67
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hal-00306418
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Universal biases in protein composition of model prokaryotes
Géraldine Pascal
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Claudine Médigue
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Article dans une revue
istex
hal-02985536
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Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis
P. Chain
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Proceedings of the National Academy of Sciences of the United States of America, 2004, 101 (38), pp.13826-13831. ⟨10.1073/pnas.0404012101⟩
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hal-04463119
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AMIGene: Annotation of Microbial Genes
Gregory Nuel
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Progress in Nucleic Acid Research and Molecular Biology, 2003, 13 (31), pp.3723-3726
Article dans une revue
hal-00271511
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Integration of data and methods for genome analysis.
Patrick Durand
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Current Opinion in Drug Discovery and Development, 2003, 6 (3), pp.346-52
Article dans une revue
hal-02072584
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The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens
Éric Duchaud
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Article dans une revue
hal-02681540
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Exploring the Penicillium marneffei genome
Kwok-Yung Yuen
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Article dans une revue
istex
hal-02985518
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The complete genome sequence of the gram-positive bacterium Bacillus subtilis
F. Kunst
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Article dans une revue
hal-02694553
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Building large knowledge bases in molecular biology
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