Corinne Vacher

Directrice de Recherche INRAE; Directrice Adjointe de l'UMR Santé et Agroécologie du Vignoble (SAVE); Coordinatrice du projet PARSADA GetUp
84%
Libre accès
61
Documents

Présentation

THEMATIQUES DE RECHERCHE: Rôle du microbiote dans la santé des plantes; Bioindicateurs microbiens de la santé des plantes; Biocontrôle microbien des maladies; Réseaux d’interactions entre microorganismes; Phyllosphère; Mildiou de la vigne

DIPLOMES: 2012 : HDR en écologie à l’Université de Bordeaux « La science des réseaux au service de l’écologie »; 2004 : Doctorat en écologie évolutive à l’Université de Montpellier; 2001 : Master 2 en écologie évolutive à l’Université de Montpellier

Domaines de recherche

Biodiversité et Ecologie Santé Sciences agricoles

Compétences

Microbial ecology Network ecology Disease ecology

Publications

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Publications

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Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology

Paola Fournier , Lucile Pellan , Aarti Jaswa , Marine C. Cambon , Alexandre Chataigner et al.
Environmental Microbiome, 2025, 20, pp.37. ⟨10.1186/s40793-025-00691-9⟩
Article dans une revue hal-05025610 v1
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Development of whole-soil microbial inoculants based on solid-phase fermentation for the regeneration of the functioning of vineyard soils

Juan Aguiar , Isabel Liberal , María Muñoz , Emma Cantos-Villar , Belén Puertas et al.
Rhizosphere, 2025, 34, pp.101039. ⟨10.1016/j.rhisph.2025.101039⟩
Article dans une revue hal-05034885 v1
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Leaf microbiome data for European beech (Fagus sylvatica) at the leaf and canopy scales collected in a gallery forest in South-West France

Tania Fort , Charlie Pauvert , Emilie Chancerel , Regis Burlett , Lisa Wingate et al.
Annals of Forest Science, 2023, 80 (1), pp.14. ⟨10.1186/s13595-023-01181-z⟩
Article dans une revue (data paper) hal-04058993 v1
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Determinants of the vertical distribution of the phyllosphere differ between microbial groups and the epi- and endosphere

Heidy Schimann , Corinne Vacher , Sabrina Coste , Elianne Louisanna , Tania Fort et al.
Phytobiomes Journal, 2023, 7 (3), pp.312-323. ⟨10.1094/PBIOMES-02-23-0013-R⟩
Article dans une revue hal-04071067 v1
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Metagenomic next⁃generation sequencing (mNGS) data reveals the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici

Didac Barroso-Bergadà , Marie Massot , Noémie Vignolles , Julie Faivre d'Arcier , Emilie Chancerel et al.
Phytobiomes Journal, 2023, 7 (2), pp.281-287. ⟨10.1094/PBIOMES-02-22-0008-FI⟩
Article dans une revue hal-03689876 v1
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Drought tolerance traits in Neotropical trees correlate with the composition of phyllosphere fungal communities

Marine Cambon , Dinïa Cartry , Emilie Chancerel , Camille Ziegler , Sebastien Levionnois et al.
Phytobiomes Journal, 2023, 7 (2), pp.244-253. ⟨10.1094/PBIOMES-04-22-0023-R⟩
Article dans une revue hal-03689880 v1
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Leaf microbiome data for European cultivated grapevine (Vitis vinifera L.) during downy mildew (Plasmopara viticola) epidemics in three wine-producing regions in France

Didac Barroso-Bergadà , François Delmotte , Julie Faivre d'Arcier , Marie Massot , Emilie Chancerel et al.
PhytoFrontiers™, 2023, 3, pp.477-483. ⟨10.1094/PHYTOFR-11-22-0138-A⟩
Article dans une revue (data paper) hal-04059014 v1
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Microbial biomarkers of tree water status for next‐generation biomonitoring of forest ecosystems

Marine C Cambon , Marine Trillat , Isabelle Lesur‐kupin , Régis Burlett , Emilie Chancerel et al.
Molecular Ecology, 2023, 32 (22), pp.5944-5958. ⟨10.1111/mec.17149⟩
Article dans une revue hal-04272156 v1
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The functional microbiome of grapevine throughout plant evolutionary history and lifetime

Paola Fournier , Lucile Pellan , Didac Barroso-Bergadà , David Bohan , Thierry Candresse et al.
Advances in Ecological Research, 2022, Advances in Ecological Research, 67, pp.27-99. ⟨10.1016/bs.aecr.2022.09.001⟩
Article dans une revue (article de synthèse) hal-03858395 v1
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Fungal Metabarcoding Data for Two Grapevine Varieties (Regent and <i>Vitis vinifera</i> ‘Cabernet-Sauvignon’) Inoculated with Powdery Mildew (<i>Erysiphe necator</i>) Under Drought Conditions

Corinne Vacher , Claire Francioni , Marion Michel , Tania Fort , Julie Faivre d'Arcier et al.
Phytobiomes Journal, 2022, 6 (4), pp.358 - 367. ⟨10.1094/pbiomes-06-22-0037-a⟩
Article dans une revue (data paper) hal-04059021 v1
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Leaf‐associated fungal and viral communities of wild plant populations differ between cultivated and natural ecosystems

Yuxin Ma , Tania Fort , Armelle Marais , Marie Lefebvre , Sébastien Theil et al.
Plant-Environment Interactions, 2021, 2, pp.87-99. ⟨10.1002/pei3.10043⟩
Article dans une revue hal-03182663 v1
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Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls

Didac Barroso‐bergada , Charlie Pauvert , Jessica Vallance , Laurent Deliere , David Bohan et al.
Molecular Ecology Resources, 2021, 21, pp.762-780. ⟨10.1111/1755-0998.13302⟩
Article dans une revue hal-03049733 v1

The plant endosphere world – bacterial life within plants

Stéphane Compant , Marine Cambon , C. Vacher , Birgit Mitter , Abdul Samad et al.
Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15240⟩
Article dans une revue hal-03158296 v1
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Maternal effects shape the seed mycobiome in Quercus petraea

Tania Fort , Charlie Pauvert , Amy Zanne , Otso Ovaskainen , Thomas Caignard et al.
New Phytologist, In press, pp.1-15. ⟨10.1111/nph.17153⟩
Article dans une revue hal-03140262 v1
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Coupling ecological network analysis with high-throughput sequencing-based surveys: Lessons from the next-generation biomonitoring project

Maxime Dubart , Pascal Alonso , Didac Barroso-Bergadà , N. Becker , Kévin Béthune et al.
Advances in Ecological Research, 2021, Advances in Ecological Research, 65, pp.367-430. ⟨10.1016/bs.aecr.2021.10.007⟩
Article dans une revue (article de synthèse) hal-03634351 v1
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Trees and Insects Have Microbiomes: Consequences for Forest Health and Management

Corinne Vacher , Bastien Castagneyrol , Emmanuelle Jousselin , Heidy Schimann
Current Forestry Reports, 2021, 7 (2), pp.81-96. ⟨10.1007/s40725-021-00136-9⟩
Article dans une revue (article de synthèse) hal-03256378 v1
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Climate warming dominates over plant genotype in shaping the seasonal trajectory of foliar fungal communities on oak

Maria Faticov , Ahmed Abdelfattah , Tomas Roslin , C. Vacher , Peter Hambäck et al.
New Phytologist, 2021, pp.1-14. ⟨10.1111/nph.17434⟩
Article dans une revue hal-03272934 v1
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Key questions for next-generation biomonitoring

Andreas Makiola , Zacchaeus G. Compson , Donald J Baird , Matthew A. Barnes , Sam Philip Boerlijst et al.
Frontiers in Environmental Science, In press, 7, ⟨10.3389/fenvs.2019.00197⟩
Article dans une revue (article de synthèse) hal-02402296 v1
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Comparison and validation of Oomycetes metabarcoding primers for Phytophthora high throughput sequencing

Jean Legeay , Claude Husson , Tristan Cordier , Corinne Vacher , Benoit Marçais et al.
Journal of Plant Pathology, 2019, 101 (3), pp.743-748. ⟨10.1007/s42161-019-00276-9⟩
Article dans une revue hal-02618173 v1
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Maternal effects and environmental filtering shape seed fungal communities in oak trees

Tania Fort , Charlie Pauvert , Amy E. Zanne , Otso Ovaskainen , Thomas Caignard et al.
BioRxiv, 2019, ⟨10.1101/691121⟩
Article dans une revue hal-02624819 v1
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Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline

Charlie Pauvert , Marc Buée , Valerie Laval , Véronique Edel-Hermann , Laure Fauchery et al.
Fungal Ecology, 2019, 41, pp.23 - 33. ⟨10.1016/j.funeco.2019.03.005⟩
Article dans une revue hal-02627344 v1
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Mise en réseau d’expérimentations de longue durée de systèmes de grande culture en agriculture biologique : apports méthodologiques et enseignements pour des systèmes très économes en phytosanitaires

Laurence Fontaine , Florian Celette , A.L de Cordoue , Pascale Metais , Stéphane Cordeau et al.
Innovations Agronomiques, 2018, 70, pp.317-330. ⟨10.15454/33nfkk⟩
Article dans une revue hal-02124766 v1

Biomonitoring for the 21st Century: Integrating Next-Generation Sequencing Into Ecological Network Analysis

Stéphane Derocles , David Bohan , Alex J Dumbrell , James J. N. Kitson , Francois Massol et al.
Advances in Ecological Research, 2018, 58, pp.1-62. ⟨10.1016/bs.aecr.2017.12.001⟩
Article dans une revue hal-01713119 v1

Next-generation global biomonitoring: large-scale, automated reconstruction of ecological networks

David Bohan , Corinne Vacher , Alireza Tamaddoni-Nezhad , Alan Raybould , Alex J Dumbrell et al.
Trends in Ecology & Evolution, 2017, 32 (7), pp.477-487. ⟨10.1016/j.tree.2017.03.001⟩
Article dans une revue hal-01606909 v1

Deciphering the pathobiome: intra- and interkingdom interactions involving the pathogen erysiphe alphitoides

Boris Jakuschkin , Virgil Fievet , Loïc Schwaller , Thomas Fort , Cécile Robin et al.
Microbial ecology, 2016, 72 (4), pp.870-880. ⟨10.1007/s00248-016-0777-x⟩
Article dans une revue hal-01533883 v1
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An evolutionary ecology perspective to address forest pathology challenges of today and tomorrow

Marie-Laure Desprez-Loustau , Jaime Aguayo , Cyril Dutech , Katherine J. Hayden , Claude Husson et al.
Annals of Forest Science, 2016, 73 (1), pp.45-67. ⟨10.1007/s13595-015-0487-4⟩
Article dans une revue hal-01318717 v1

Phyllosphere fungal communities differentiate more thoroughly than bacterial communities along an elevation gradient

Corinne C. Vacher , Tristan Cordier , Jessica J. Vallance
Microbial ecology, 2016, 72 (1), pp.1-3. ⟨10.1007/s00248-016-0742-8⟩
Article dans une revue hal-02635469 v1
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Combining selective pressures to enhance the durability of disease resistance genes

Denis Bourguet , François Delmotte , Pierre Franck , Thomas Guillemaud , Xavier Reboud et al.
Frontiers in Plant Science, 2016, 7, pp.1-8. ⟨10.3389/fpls.2016.01916⟩
Article dans une revue hal-01533924 v1
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Foliar fungal communities strongly differ between habitat patches in a landscape mosaic

Thomas Fort , Cécile Robin , Xavier Capdevielle , Laurent Deliere , Corinne Vacher
PeerJ, 2016, 4, 20 p. ⟨10.7717/peerj.2656⟩
Article dans une revue hal-02640391 v1

The phyllosphere: microbial jungle at the plant–climate interface

Corinne C. Vacher , Arndt Hampe , Annabel J. Porté , Ursula Sauer , Stéphane Compant et al.
Annual Review of Ecology, Evolution, and Systematics, 2016, Annual Review of Ecology, Evolution, and Systematics, 47, pp.1-24. ⟨10.1146/annurev-ecolsys-121415-032238⟩
Article dans une revue (article de synthèse) hal-02801457 v1
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Forest tree genomics: 10 achievements from the past 10 years and future prospects

Christophe Plomion , Catherine Bastien , Marie-Béatrice Bogeat-Triboulot , Laurent Bouffier , Annabelle Déjardin et al.
Annals of Forest Science, 2016, 73 (1), pp.77-103. ⟨10.1007/s13595-015-0488-3⟩
Article dans une revue (article de synthèse) hal-01330031 v1
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Networking our way to better ecosystem service provision

David Bohan , Dries Landuyt , Athen Ma , Sarina Macfadyen , Vincent V. Martinet et al.
Trends in Ecology & Evolution, 2016, 31 (2), pp.105-115. ⟨10.1016/j.tree.2015.12.003⟩
Article dans une revue hal-01298064 v1

10 years later: revisiting priorities for science and society a decade after the millennium ecosystem assessment

Christian Mulder , Elena M. Bennett , David Bohan , Michael Bonkowski , Stephen R. Carpenter et al.
Advances in Ecological Research, 2015, 53, ⟨10.1016/bs.aecr.2015.10.005⟩
Article dans une revue hal-02801412 v1

Clustering methods differ in their ability to detect patterns in ecological networks

Jean-Benoist Leger , Jean-Jacques Daudin , Corinne Vacher
Methods in Ecology and Evolution, 2015, online first (4), ⟨10.1111/2041-210X.12334⟩
Article dans une revue hal-01197632 v1
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Leaf and root-associated fungal assemblages do not follow similar elevational diversity patterns

A. Coince , T. Cordier , J. Lengellé , E. Defossez , C. Vacher et al.
PLoS ONE, 2014, 9 (6), 10 p. ⟨10.1371/journal.pone.0100668⟩
Article dans une revue hal-01143027 v1

Effects of plant phylogenetic diversity on herbivory depend on herbivore specialization

Bastien Castagneyrol , Herve Jactel , Corinne C. Vacher , Eckehard G. Brockerhoff , Julia Koricheva
Journal of Applied Ecology, 2014, 51 (1), pp.134-141. ⟨10.1111/1365-2664.12175⟩
Article dans une revue hal-02634322 v1

Detection of structurally homogeneous subsets in graphs

Jean-Benoist Leger , Corinne Vacher , Jean-Jacques Daudin
Statistics and Computing, 2014, online first (5), 18 p. ⟨10.1007/s11222-013-9395-3⟩
Article dans une revue hal-01019247 v1
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Heterogeneity of selection and the evolution of resistance

Denis D. Bourguet , François F. Delmotte , Pierre P. Franck , Thomas Guillemaud , Xavier Reboud et al.
Trends in Ecology & Evolution, 2013, 28 (2), pp.110-118. ⟨10.1016/j.tree.2012.09.001⟩
Article dans une revue hal-01000430 v1
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Putting the biological species concept to the test: using mating networks to delimit species

Lelia L. Lagache , Jean-Benoist Leger , Jean-Jacques J.-J. Daudin , Remy Petit Petit R.J. , Corinne C. Vacher
PLoS ONE, 2013, 8 (6), 11 p. ⟨10.1371/journal.pone.0068267⟩
Article dans une revue hal-01001112 v1

Gestion des résistances. L’importance des modalités de déploiement des substances

. Rex Consortium (resistance To Xenobiotics) , Denis D. Bourguet , François F. Delmotte , Pierre Franck , Thomas Guillemaud et al.
Phytoma , 2013, 669, pp.10-14
Article dans une revue hal-02643623 v1

The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica) varies significantly along an elevation gradient

Tristan Cordier , Cécile C. Robin , Xavier Capdevielle , Olivier Fabreguettes , Marie Laure M. L. Desprez Loustau et al.
New Phytologist, 2012, 196 (2), pp.510-519. ⟨10.1111/j.1469-8137.2012.04284.x⟩
Article dans une revue hal-02647750 v1

Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus syluatica)

Tristan Cordier , Cécile C. Robin , Xavier Capdevielle , Marie Laure M. L. Desprez Loustau , Corinne C. Vacher
Fungal Ecology, 2012, 5 (5), pp.509-520. ⟨10.1016/j.funeco.2011.12.004⟩
Article dans une revue hal-02648013 v1

Predicting invasion success of forest pathogenic fungi from species traits

Aurore A. Philibert , Marie Laure M. L. Desprez Loustau , Bénédicte Fabre , Pascal Frey , Fabien Halkett et al.
Journal of Applied Ecology, 2011, 48 (6), pp.1381 - 1390. ⟨10.1111/j.1365-2664.2011.02039.x⟩
Article dans une revue hal-01000012 v1
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Impact of interspecific hybridization between crops and weedy relatives on the evolution of flowering time in weedy phenotypes

Corinne C. Vacher , Tanya M. Kossler , Michael E. Hochberg , Arthur E. Weis
PLoS ONE, 2011, 6 (2), 7p. ⟨10.1371/journal.pone.0014649⟩
Article dans une revue hal-02646038 v1
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The skill and style to model the evolution of resistance to pesticides and drugs

Denis Bourguet , François Delmotte , Pierre Franck , Thomas Guillemaud , Xavier Reboud et al.
Evolutionary Applications, 2010, 3 (4), pp.375-390. ⟨10.1111/j.1752-4571.2010.00124.x⟩
Article dans une revue hal-01219017 v1
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Uncovering latent structure in valued graphs: a variational approach

Mahendra Mariadassou , Stephane Robin , Corinne Vacher
Annals of Applied Statistics, 2010, 4 (2), pp.715-742. ⟨10.1214/10-AOAS361⟩
Article dans une revue hal-01197514 v1

Ecological integration of alien species into a tree-parasitic fungus network

Corinne Vacher , Jean-Jacques Daudin , Dominique Piou , Marie Laure Desprez Loustau
Biological Invasions, 2010, 12 (9), pp.3249-3259. ⟨10.1007/s10530-010-9719-6⟩
Article dans une revue istex hal-01197512 v1

Model for heterogeneous random networks using continuous latent variables and an application to a tree–fungus network

Jean-Jacques Daudin , Laurent Pierre , Corinne Vacher
Biometrics, 2010, 66 (4), pp.1043-1051. ⟨10.1111/j.1541-0420.2009.01378.x⟩
Article dans une revue istex hal-01197517 v1
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Architecture of an antagonistic tree/fungus network : the asymmetric influence of past evolutionary history

Corinne C. Vacher , Dominique Piou , Marie Laure M. L. Desprez Loustau
PLoS ONE, 2008, 3 (3), pp.e1740. ⟨10.1371/journal.pone.0001740⟩
Article dans une revue hal-02669044 v1

Distribution of parasitic fungal species richness: influence of climate versus host species diversity

Corinne C. Vacher , Denis Vile , Emmanuelle Helion , Dominique Piou , Marie Laure M. L. Desprez Loustau
Diversity and Distributions, 2008, 14 (5), pp.786-798. ⟨10.1111/j.1472-4642.2008.00479.x⟩
Article dans une revue hal-02661194 v1
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Structure of the scientific community modelling the evolution of resistance

Denis D. Bourguet , François F. Delmotte , Pierre Franck , Thomas Guillemaud , Xavier Reboud et al.
PLoS ONE, 2007, 2 (12), pp.e1275. ⟨10.1371/journal.pone.0001275⟩
Article dans une revue hal-02656910 v1

Fees or refuges: which is better for the sustainable management of insect resistance to transgenic Bt corn?

Corinne Vacher , Denis Bourguet , Marion Desquilbet , Stéphane Lemarié , Stefan Ambec et al.
Biology Letters, 2006, 2 (2), pp.198-202. ⟨10.1098/rsbl.2005.0418⟩
Article dans une revue halsde-00300559 v1
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Avoid, attack or do both? Behavioral and physiological adaptations in natural enemies faced with novel hosts

Corinne C. Vacher , Sam P. Brown , Michael E. Hochberg
BMC Evolutionary Biology, 2005, 5, pp.Article 60. ⟨10.1186/1471-2148-5-60⟩
Article dans une revue hal-02679031 v1

High dose refuge strategies and genetically modified crops – reply to Tabashnik et al.

C. Vacher , Denis Bourguet , Francois Rousset , C. Chevillon , Michael E. Hochberg
Journal of Evolutionary Biology, 2004, 17 (4), pp.913 - 918. ⟨10.1111/j.1420-9101.2004.00730.x⟩
Article dans une revue halsde-00326940 v1
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Modelling the spatial configuration of refuges for a sustainable control of pests: a case study of Bt cotton

Corinne Vacher , Denis D. Bourguet , François Rousset , Christine Chevillon , Michael Hochberg
Journal of Evolutionary Biology, 2003, 16 (3), pp.378-387. ⟨10.1046/j.1420-9101.2003.00553.x⟩
Article dans une revue hal-02674164 v1