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Designing molecular RNA switches with Restricted Boltzmann machines
Jorge Fernandez-De-Cossio-Diaz
,
Pierre Hardouin
,
Francois-Xavier Lyonnet Du Moutier
,
Andrea Di Gioacchino
,
Bertrand Marchand
et al.
Article dans une revue
hal-04294884v1
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Inference and design of antibody specificity: From experiments to models and back
Jorge Fernandez-De-Cossio-Diaz
,
Guido Uguzzoni
,
Kévin Ricard
,
Francesca Anselmi
,
Clément Nizak
et al.
Article dans une revue
hal-04778023v2
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Unsupervised modeling of mutational landscapes of adeno-associated viruses viability
Matteo de Leonardis
,
Jorge Fernandez-De-Cossio-Diaz
,
Guido Uguzzoni
,
Andrea Pagnani
Article dans une revue
hal-04733979v1
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Inference of annealed protein fitness landscapes with AnnealDCA
Luca Sesta
,
Andrea Pagnani
,
Jorge Fernandez-De-Cossio-Diaz
,
Guido Uguzzoni
Article dans une revue
hal-04733981v1
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HEK293 producing the extracellular domain HER1: Full datasets of continuous fermentation process and metabolites analysis
Lisandra Calzadilla
,
Erick Hernández
,
Julio Dustet
,
Jorge Fernandez-De-Cossio-Diaz
,
Kalet León
et al.
Article dans une revue
(data paper)
hal-04785695v1
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Benchmarking solutions to the T-cell receptor epitope prediction problem: IMMREP22 workshop report
Pieter Meysman
,
Justin Barton
,
Barbara Bravi
,
Liel Cohen-Lavi
,
Vadim Karnaukhov
et al.
Article dans une revue
hal-03854607v1
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Disentangling Representations in Restricted Boltzmann Machines without Adversaries
Jorge Fernandez-De-Cossio-Diaz
,
Simona Cocco
,
Rémi Monasson
Article dans une revue
hal-04307038v1
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A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity
Barbara Bravi
,
Andrea Di Gioacchino
,
Jorge Fernandez-De-Cossio-Diaz
,
Aleksandra Walczak
,
Thierry Mora
et al.
Article dans une revue
hal-04252230v1
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Multiple steady states and metabolic switches in continuous cultures of HEK293: Experimental evidences and metabolomics
Lisandra Calzadilla
,
Erick Hernández
,
Julio Dustet
,
Jorge Fernandez-De-Cossio-Diaz
,
Kalet León
et al.
Article dans une revue
hal-04734126v1
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Inference of metabolic fluxes in nutrient-limited continuous cultures: A Maximum Entropy approach with the minimum information
José Antonio Pereiro-Morejon
,
Jorge Fernandez-De-Cossio-Diaz
,
Roberto Mulet
Article dans une revue
hal-04622251v1
|
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AMaLa: Analysis of Directed Evolution Experiments via Annealed Mutational Approximated Landscape
Luca Sesta
,
Guido Uguzzoni
,
Jorge Fernandez-De-Cossio-Diaz
,
Andrea Pagnani
Article dans une revue
hal-03405967v1
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In‐silico media optimization for continuous cultures using genome scale metabolic networks: The case of CHO‐K1
Bárbara Pérez-Fernández
,
Jorge Fernandez-De-Cossio-Diaz
,
Tammy Boggiano
,
Kalet León
,
Roberto Mulet
Article dans une revue
hal-04734127v1
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Unsupervised Inference of Protein Fitness Landscape from Deep Mutational Scan
Jorge Fernandez-De-Cossio-Diaz
,
Guido Uguzzoni
,
Andrea Pagnani
Article dans une revue
hal-04734128v1
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A self-consistent probabilistic formulation for inference of interactions
Jorge Fernandez-De-Cossio
,
Jorge Fernandez-De-Cossio-Diaz
,
Yasser Perera-Negrin
Article dans une revue
hal-04734130v1
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Formate induces a metabolic switch in nucleotide and energy metabolism
Kristell Oizel
,
Jacqueline Tait-Mulder
,
Jorge Fernandez-De-Cossio-Diaz
,
Matthias Pietzke
,
Holly Brunton
et al.
Article dans une revue
hal-04734134v1
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Statistical mechanics of interacting metabolic networks
Jorge Fernandez-De-Cossio-Diaz
,
Roberto Mulet
Article dans une revue
hal-04734133v1
|
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Maximum entropy and population heterogeneity in continuous cell cultures
Jorge Fernandez-De-Cossio-Diaz
,
Roberto Mulet
Article dans une revue
hal-04734137v1
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Cell population heterogeneity driven by stochastic partition and growth optimality
Jorge Fernandez-De-Cossio-Diaz
,
Roberto Mulet
,
Alexei Vazquez
Article dans une revue
hal-04734135v1
|
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A physical model of cell metabolism
Jorge Fernandez-De-Cossio-Diaz
,
Alexei Vazquez
Article dans une revue
hal-04734140v1
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Microenvironmental cooperation promotes early spread and bistability of a Warburg-like phenotype
Jorge Fernandez-De-Cossio-Diaz
,
Andrea de Martino
,
Roberto Mulet
Article dans une revue
hal-04734143v1
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Limits of aerobic metabolism in cancer cells
Jorge Fernandez-De-Cossio-Diaz
,
Alexei Vazquez
Article dans une revue
hal-04734142v1
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Characterizing steady states of genome-scale metabolic networks in continuous cell cultures
Jorge Fernandez-De-Cossio-Diaz
,
Kalet Leon
,
Roberto Mulet
Article dans une revue
hal-04734141v1
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Optimally Designed Quantum Transport across Disordered Networks
Mattia Walschaers
,
Jorge Fernandez-De-Cossio Diaz
,
Roberto Mulet
,
Andreas Buchleitner
Article dans une revue
hal-03037452v1
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Optimally Designed Quantum Transport across Disordered Networks
Mattia Walschaers
,
Jorge Fernandez-De-Cossio Diaz
,
Roberto Mulet
,
Andreas Buchleitner
Article dans une revue
hal-04734147v1
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Computation of Isotopic Peak Center-Mass Distribution by Fourier Transform
Jorge Fernandez-De-Cossio Diaz
,
Jorge Fernandez-De-Cossio
Article dans une revue
hal-04734148v1
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