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Cyril Bontemps

52
Documents
Researcher identifiers

Presentation

**Bio:** I received my Ph.D in Microbial Ecology from the University of Lyon in 2005. Under the supervision of Catherine Boivin-Masson both in the LSTM (Montpellier) and LIPM (Toulouse) labs, my work focused on the creation of molecular tools to detect rhizobia that are plant mutualistic bacteria. I then continued my research activities from 2006 to 2009 at the University of York (UK) during two different post-docs. In the first one, in Peter Young’s lab, I prospected the rhizobia diversity in investigating the distribution and the evolution of the recently discovered b-rhizobia. In the second one, in the CNAP under the supervision of Neil Bruce, I studied the diversity of explosive-degrading bacteria and their involved mechanisms. I then joined the DynAMic Lab in September 2009 as a lecturer (assistant professor) **Research**: In using approaches from microbiology to genomics, my current work focuses on the evolution and on the ecology of *Streptomyces*. In using *Streptomyces* collections created from grains of soil, I tried to measure the evolution of *Streptomyces* in their natural environment and decipher what are the main drivers of this evolution. I also tried to infer the consequences of this evolution on the ecological traits at the population level. I am also interested in exploiting the *Streptomyces* functional diversity in more applied projects (*e.g*. developing biosensors for wood degradation, discovering of molecules with interesting activities…). **Teaching**: As a lecturer, I teach 192H per year to Bachelor and Master of Science students (from years 1 to 5). My main teaching topics are Microbiology, Evolution, Phylogeny and Microbial Ecology.

Publications

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One-year follow-up of microbial diversity in bioaerosols emitted in a waste sorting plant in France

Jodelle Degois , Xavier Simon , Frédéric Clerc , Cyril Bontemps , Pierre Leblond
Waste Management, 2021, 120, pp.257-268. ⟨10.1016/j.wasman.2020.11.036⟩
Journal articles hal-03070350v1
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Elicitation of Antimicrobial Active Compounds by Streptomyces-Fungus Co-Cultures

Matthieu Nicault , Ali Zaiter , Stéphane Dumarcay , Patrick Chaimbault , Éric Gelhaye
Microorganisms, 2021, 9 (1), pp.178. ⟨10.3390/microorganisms9010178⟩
Journal articles hal-03112257v1
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Mining the Biosynthetic Potential for Specialized Metabolism of a Streptomyces Soil Community

Matthieu Nicault , Abdoul-Razak Tidjani , Anthony Gauthier , Stéphane Dumarcay , Éric Gelhaye
Antibiotics, 2020, 9 (5), pp.271. ⟨10.3390/antibiotics9050271⟩
Journal articles hal-02619232v1
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Genome Sequences of Five Streptomyces Strains Isolated at Microscale

Matthieu Nicault , Abdoul-Razak Tidjani , Éric Gelhaye , Cyril Bontemps , Pierre Leblond
Microbiology Resource Announcements, 2020, 9 (23), ⟨10.1128/MRA.00428-20⟩
Journal articles hal-02801725v1
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Telomeric and sub-telomeric regions undergo rapid turnover within a Streptomyces population

Abdoul-Razak Tidjani , Cyril Bontemps , Pierre Leblond
Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-63912-w⟩
Journal articles hal-02569171v1
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Massive Gene Flux Drives Genome Diversity between Sympatric Streptomyces Conspecifics

Abdoul-Razak Tidjani , Jean-Noël Lorenzi , Maxime Toussaint , Erwin van Dijk , Delphine Naquin
Journal articles hal-02278804v1

Characterization of experimental complex fungal bioaerosols

Jodelle Degois , Xavier Simon , Cyril Bontemps , Pierre Leblond , Philippe Duquenne
Aerosol Science and Technology, 2019, 53 (2), pp.146-159. ⟨10.1080/02786826.2018.1557320⟩
Journal articles hal-02177356v1
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Genome Sequences of 11 Conspecific Streptomyces sp. Strains

Abdoul-Razak Tidjani , Jean-Noël Lorenzi , Maxime Toussaint , Erwin van Dijk , Delphine Naquin
Microbiology Resource Announcements, 2019, 8 (38), ⟨10.1128/MRA.00863-19⟩
Journal articles hal-02292599v1
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Diversité et activités antimicrobiennes de souches de Streptomyces de la Fetzara (Algérie)

Mabrouka Benhadj , Djamila Gacemi-Kirane , Maxime Toussaint , Laurence Hotel , Cyril Bontemps
Annales de Biologie Clinique, 2018, 76 (1), pp.81-95. ⟨10.1684/abc.2017.1316⟩
Journal articles hal-01844922v1
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First metagenomic survey of the microbial diversity in bioaerosols emitted in waste sorting plants

Jodelle Degois , Frédéric Clerc , Xavier Simon , Cyril Bontemps , Pierre Leblond
Annals of Work Exposures and Health, 2017, 61 (9), pp.1076 - 1086. ⟨10.1093/annweh/wxx075⟩
Journal articles hal-01655252v1
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Multiple and Variable NHEJ-Like Genes Are Involved in Resistance to DNA Damage in Streptomyces ambofaciens

Grégory Hoff , Claire Bertrand , Lingli Zhang , Emilie Piotrowski , Ludovic Chipot
Frontiers in Microbiology, 2016, 7, pp.1901. ⟨10.3389/fmicb.2016.01901⟩
Journal articles hal-01521993v1
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Whole-cell biosensor of cellobiose and application to wood decay detection

Maxime Toussaint , Cyril Bontemps , Arnaud Besserer , Laurence Hotel , Philippe Gérardin
Journal of Biotechnology, 2016, 239, pp.39 - 46. ⟨10.1016/j.jbiotec.2016.10.003⟩
Journal articles hal-01655326v1
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Endemic Mimosa species from Mexico prefer alphaproteobacterial rhizobial symbionts

Cyril Bontemps , Marco Antonio Rogel , Anja Wiechmann , Assel Mussabekova , Sarah Moody
New Phytologist, 2016, 209 (1), pp.319 - 333. ⟨10.1111/nph.13573⟩
Journal articles hal-01655686v1
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Analysis of the xplAB-Containing Gene Cluster Involved in the Bacterial Degradation of the Explosive Hexahydro-1,3,5-Trinitro-1,3,5-Triazine

Chun Shiong Chong , Dana Khdr Sabir , Astrid Lorenz , Cyril Bontemps , Peter Andeer
Applied and Environmental Microbiology, 2014, 80 (21), pp.6601 - 6610. ⟨10.1128/AEM.01818-14⟩
Journal articles hal-01477281v1
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High genetic diversity among strains of the unindustrialized lactic acid bacterium carnobacterium maltaromaticum in dairy products as revealed by multilocus sequence typing

Abdur Rahman , Catherine Cailliez-Grimal , Cyril Bontemps , Sophie Payot , Stephane Chaillou
Applied and Environmental Microbiology, 2014, 80 (13), pp.3920-3929. ⟨10.1128/AEM.00681-14⟩
Journal articles hal-01190026v1

Taxonomic and functional diversity of Streptomyces in a forest soil

Cyril Bontemps , Maxime Toussaint , Pierre-Vincent Revol , Laurence Hotel , Mathilde Jeanbille
FEMS Microbiology Letters, 2013, 342 (2), pp.157 - 167. ⟨10.1111/1574-6968.12126⟩
Journal articles hal-01655681v1

Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp.

S.-Y. Sheu , J.-H. Chou , C. Bontemps , G. N. Elliott , E. Gross
International Journal of Systematic and Evolutionary Microbiology, 2013, 63 (Pt 2), pp.435 - 441. ⟨10.1099/ijs.0.039859-0⟩
Journal articles hal-01477184v1

Burkholderia symbiotica sp. nov., isolated from root nodules of Mimosa spp. native to north-east Brazil

Shih-Yi Sheu , Jui-Hsing Chou , Cyril Bontemps , Geoffrey N Elliott , Eduardo Gross
International Journal of Systematic and Evolutionary Microbiology, 2012, 62 (Pt 9), pp.2272-2278. ⟨10.1099/ijs.0.037408-0⟩
Journal articles hal-01655728v1

Mesorhizobium camelthorni sp. nov., isolated from Alhagi sparsifolia

Wei-Min Chen , Wen-Fei Zhu , Cyril Bontemps , Hong Wei , J. Peter W. Young
International Journal of Systematic and Evolutionary Microbiology, 2011, 61 (3), pp.574-579. ⟨10.1099/ijs.0.022947-0⟩
Journal articles hal-01655740v1

Legume-Nodulating Betaproteobacteria: Diversity, Host Range, and Future Prospects

Prasad Gyaneshwar , Ann M Hirsch , Lionel Moulin , Wen-Ming Chen , Geoffrey N Elliott
Molecular Plant-Microbe Interactions, 2011, 24 (11), pp.1276-1288. ⟨10.1094/MPMI-06-11-0172⟩
Journal articles hal-01655720v1

Burkholderia species are ancient symbionts of legumes

Cyril Bontemps , Geoffrey N. Elliott , Marcelo F. Simon , Fábio B. dos Reis Júnior , Eduardo Gross
Molecular Ecology, 2010, 19 (1), pp.44 - 52. ⟨10.1111/j.1365-294X.2009.04458.x⟩
Journal articles hal-01655679v1
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Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil

Fábio Bueno dos Reis , Marcelo F. Simon , Eduardo Gross , Robert M Boddey , Geoffrey N Elliott
New Phytologist, 2010, 186 (4), pp.934 - 946. ⟨10.1111/j.1469-8137.2010.03267.x⟩
Journal articles hal-01655708v1

Mesorhizobium alhagi sp. nov., isolated from wild Alhagi sparsifolia in north-western China

Wei-Min Chen , Wen-Fei Zhu , Cyril Bontemps , J. Peter W. Young , Ge Hong Wei
International Journal of Systematic and Evolutionary Microbiology, 2010, 60 (4), pp.958-962. ⟨10.1099/ijs.0.014043-0⟩
Journal articles hal-01655743v1

Burkholderia spp. are the most competitive symbionts of Mimosa , particularly under N-limited conditions

Geoffrey N Elliott , Jui-Hsing Chou , Wen-Ming Chen , Guido V Bloemberg , Cyril Bontemps
Environmental Microbiology, 2009, 11 (4), pp.762 - 778. ⟨10.1111/j.1462-2920.2008.01799.x⟩
Journal articles hal-01655718v1

Invasive Robinia pseudoacacia in China is nodulated by Mesorhizobium and Sinorhizobium species that share similar nodulation genes with native American symbionts

Gehong Wei , Weimin Chen , Wenfei Zhu , Chun Chen , J. Peter W. Young
FEMS Microbiology Ecology, 2009, 68 (3), pp.320-328. ⟨10.1111/j.1574-6941.2009.00673.x⟩
Journal articles hal-01655734v1

A new clade of Mesorhizobium nodulating Alhagi sparsifolia

Gehong Wei , Weimin Chen , J. Peter W. Young , Cyril Bontemps
Systematic and Applied Microbiology, 2009, 32 (1), pp.8-16. ⟨10.1016/j.syapm.2008.11.003⟩
Journal articles hal-01655732v1

Genome sequence of the -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

Claire Amadou , Géraldine Pascal , Sophie Mangenot , Michelle Glew , Cyril Bontemps
Genome Research, 2008, 18 (9), pp.1472 - 1483. ⟨10.1101/gr.076448.108⟩
Journal articles hal-01655676v1

Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia

Wen-Ming Chen , Sergio M de Faria , Jui-Hsing Chou , E. K. James , Geoffrey N Elliott
International Journal of Systematic and Evolutionary Microbiology, 2008, 58 (9), pp.2174-2179. ⟨10.1099/ijs.0.65816-0⟩
Journal articles hal-01655692v1

Nodulation of Cyclopia spp. (Leguminosae, Papilionoideae) by Burkholderia tuberum

Geoffrey N Elliott , Wen-Ming Chen , Cyril Bontemps , Jui-Hsing Chou , J.Péter. W Young
Annals of Botany, 2007, 100 (7), pp.1403 - 1411. ⟨10.1093/aob/mcm227⟩
Journal articles hal-01655717v1

Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta

Geoffrey N Elliott , Wen-Ming Chen , Jui-Hsing Chou , Hui-Chun Wang , Shih-Yi Sheu
New Phytologist, 2007, 173 (1), pp.168 - 180. ⟨10.1111/j.1469-8137.2006.01894.x⟩
Journal articles hal-01655713v1

Détection et typage du gène à l'aide de biopuces à ADN : perspectives pour l'étude de la diversité et de l'écologie moléculaire des rhizobia

Catherine Boivin-Masson , Cyril Bontemps , Geoffroy Golfier , Carine Gris-Liebe , Luc Talini
Actes du BRG, 2006, 6, pp.97 - 110
Journal articles hal-01655670v1

Microarray-Based Detection and Typing of the Rhizobium Nodulation Gene nodC: Potential of DNA Arrays To Diagnose Biological Functions of Interest

Cyril Bontemps , Geoffroy Golfier , Carine Gris-Liebe , Sebastien Carrere , Luc Talini
Applied and Environmental Microbiology, 2005, 71 (12), pp.8042 - 8048. ⟨10.1128/AEM.71.12.8042–8048.2005⟩
Journal articles hal-01655599v1
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Legume Symbiotic Nitrogen Fixation by β-Proteobacteria Is Widespread in Nature

Wen-Ming Chen , Lionel Moulin , Cyril Bontemps , Peter Vandamme , Gilles Béna
Journal of Bacteriology, 2003, 185 (24), pp.7266-7272. ⟨10.1128/JB.185.24.7266-7272.2003⟩
Journal articles hal-01655696v1

Characterization of a Novel Type II Restriction-Modification System, Sth368I, Encoded by the Integrative Element ICESt1 of Streptococcus thermophilus CNRZ368

Vincent Burrus , Cyril Bontemps , Bernard Decaris , G. Guédon
Applied and Environmental Microbiology, 2001, 67 (4), pp.1522 - 1528. ⟨10.1128/AEM.67.4.1522–1528.2001⟩
Journal articles hal-01655688v1

Diversity and mobility of conjugative elements in a population of Streptomyces isolated from a rhizospheric micro-habitat.

Caroline Choufa , Anthony Gauthier , Manar Harb , Vos Michiel , Cyril Bontemps
Journées des Actinobactéries 2020 - ACTINO 2020, Dec 2020, Conférence virtuelle Gif Sur Yvette, France
Conference papers hal-03060874v1

Massive gene fluxes in bacterial population fuels adaptation to soil forest ecosystem

Abdoul-Razak Tidjani , Jean-Noël Lorenzi , Olivier Lespinet , Cyril Bontemps , Pierre Leblond
Functional Ecology Conference Nancy 2018, Dec 2018, Nancy, France
Conference papers hal-02306656v1

Decipher and exploit interactions between bacteria and fungi to identify new bioactive metabolites

Matthieu Nicault , Cyril Bontemps , Éric Gelhaye , Pierre Leblond
Séminaire LUE Impact/Biomolécules du futur : de la découverte aux applications, May 2018, Nancy, France
Conference papers hal-03216629v1

Suivi sur une année de la biodiversité microbienne dans les bioaerosols émis dans un centre de tri des déchets

Jodelle Degois , Frédéric Clerc , Simon Xavier , Cyril Bontemps , Pierre Leblond
Congrès français sur les aérosols 2018 (CFA), Jan 2018, Paris, France
Conference papers hal-01582590v1

One year follow up of microbial biodiversity in French waste sorting plant

J Degois , F. Clerc , X. Simon , C Bontemps , Pierre Leblond
9th International Symposium on Modern Principles of Air Monitoring and Biomonitoring (AIRMON 2017), Jun 2017, Dresden, Germany
Conference papers hal-01657806v1

Micro-time scale genome evolution among natural populations of Streptomyces

Maxime Toussaint , Abdoul-Razak Tidjani , Jean-Noël Lorenzi , Laurence Hotel , Olivier Lespinet
International Symposium of the Biology of Actinomycetes, May 2017, Jeju, South Korea
Conference papers hal-01625360v1

Generation of a fungal consortium: impact of analytic tools on biodiversity analysis

J Degois , X. Simon , C Bontemps , Pierre Leblond , P Duquenne
European Aerosol Conference EAC 2017, Aug 2017, Zurich, Switzerland
Conference papers hal-01657801v1

Evolution génomique au sein d'une population naturelle de Streptomyces

Abdoul-Razak Tidjani , Maxime Toussaint , Jean-Noël Lorenzi , Laurence Hotel , Olivier Lespinet
Actino2017 Journées des Actinobactéries, Oct 2017, Lyon, France
Conference papers hal-01655238v1

Bioaerosol biodiversity in waste sorting plant: feasibility and uncertainty measurement

J Degois , F. Clerc , X. Simon , C Bontemps , Pierre Leblond
European Aerosol Conference EAC 2016, Sep 2016, Tours, France
Conference papers hal-01657790v1

Impact of nutrient availability on the diversity, function and functioning of the forest soil bacterial communities: insights from the soil succession of the forest experimental site of Montiers.

Stephane Uroz , Marie-Pierre M.-P. Turpault , Océane Nicolitch , Yannick Colin , Marc Buée
Labex ARBRE conference, Oct 2016, Champenoux, France
Conference papers hal-03339707v1

Taxonomic and functional diversity of Streptomyces in a forest soil

Cyril Bontemps , Laurence Hotel , Pierre-Vincent Revol , Mathilde Jeanbille , Stéphane Uroz
Journées Actinomycètes, 2012, Nancy, France
Conference papers hal-01269133v1
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Massive gene flux in bacterial population fuels adaptation to forest soil ecosystem

Abdoul-Razak Tidjani , Jean-Noël Lorenzi , Olivier Lespinet , Cyril Bontemps , Pierre Leblond
15ème congrès de la Société Française de Microbiologie, Sep 2019, Paris 19ème, France. 2019
Conference poster hal-02314235v1

Activation of cryptic biosynthetic pathways by bacterial/fungal co-cultures

Matthieu Nicault , Cyril Bontemps , Éric Gelhaye , P. Leblond
Biomolecules: Research & Development, Markets and Acceptability - LUE Impact Biomolecule seminar, Oct 2019, Palma de Mallorca, Spain
Conference poster hal-03216601v1
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Activation of antimicrobial compounds by bacterial/fungal co-cultures

Matthieu Nicault , Cyril Bontemps , Eric Gelhaye , Pierre Leblond
8th FEMS Congress of European Microbiologists - FEMS 2019, Jul 2019, Glasgow, United Kingdom
Conference poster hal-03216608v1
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Interplay between lateral gene transfer and rhizosphere functioning

Caroline Choufa , Abdoul-Razak Tidjani , Claire Veneault-Fourrey , Vos Michiel , Cyril Bontemps
Functional ecology conference 2018, Dec 2018, Nancy, France
Conference poster hal-03060574v1

Deciphering and exploiting bacteria-fungi dialogues to identify new bioactive metabolites

Matthieu Nicault , Cyril Bontemps , Éric Gelhaye , Pierre Leblond
12èmes Rencontres de Phytopathologie - Mycologie de la Société Française de Phytopathologie, Jan 2018, Aussois, France
Conference poster hal-03216613v1
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Bacteria/fungi Interactions (BFI): a way to awake secondary metabolite gene clusters

Matthieu Nicault , Cyril Bontemps , Éric Gelhaye , Pierre Leblond
Lorraine Université d'Excellence (LUE) Séminaire Impact Biomolécules, May 2018, Nancy, France
Conference poster hal-03216622v1