Damien Courtine

Bio-informatician in a microbiology laboratory. I work mainly in fields of environmental genomics and host-parasite interactions

Documents

Affiliation actuelle

Laboratoire Microorganismes : Génome et Environnement (LMGE)

Contact

Domaines de recherche

Biodiversité et Ecologie

Compétences

Python Bioinformatics Sequencing data Genomics Metagenomics Microorganisms Eukaryotes Bacteria Archaea Micro-Eukaryotes Environment

Publications

New genomic and transposable element annotation of the microsporidian parasite Anncaliia algerae

Reginald Florian Akossi , Lou Rochette , Emmanuelle Lerat , Hicham El Alaoui , Damien Courtine et al.

Genomics, 2026, 118 (6), pp.111322. ⟨10.1016/j.ygeno.2026.111322⟩

Article dans une revue hal-05781129v1

Combined exposure to mitochondrial-targeting fungicide formulations and Nosema ceranae affects survival and midgut transcriptomic responses in the honeybee Apis mellifera

Juliette Gilbert , Clémentine Mathien , Christophe Portelli , Damien Courtine , Jean-Marc Bonmatin et al.

Journal of Hazardous Materials Advances, 2026, 23, pp.101473. ⟨10.1016/j.hazadv.2026.101473⟩

Article dans une revue hal-05725782v1

A multi-omic resource for exploring microbial eukaryotes in the meromictic freshwater Lake Pavin

Damien Courtine , Cécile Lepère , Ivan Wawrzyniak , Anne Moné , Hermine Billard et al.

Scientific Data , In press, Metagenomics in marine and terrestrial aquatic environments, ⟨10.1038/s41597-026-06573-0⟩

Article dans une revue hal-05477144v1

Hydrogenimesophilus fermentans gen. nov., sp. nov., a novel anaerobic hydrogen-producing bacterium isolated from lacustrine sediment

Khaled Fadhlaoui , Ayité Adama Hondegla , Gaëlle Marchal , Eric Viollier , Neha Mehta et al.

International Journal of Systematic and Evolutionary Microbiology, 2026, 76 (10), pp.007304. ⟨10.1099/ijsem.0.007304⟩

Article dans une revue hal-05783088v1

Kineothrix sedimenti sp. nov., a 3-hydroxybutyrate-producing bacterium isolated from sediment of the meromictic Lake Pavin

Corinne Biderre-Petit , Ayité Adama Hongleda , Gaëlle Marchal , Neha Mehta , Jean-Sébastien Guez et al.

International Journal of Systematic and Evolutionary Microbiology, 2025, 75 (4), pp.006750. ⟨10.1099/ijsem.0.006750⟩

Article dans une revue hal-05046305v1

Comparison of methane yield of a novel strain of Methanothermobacter marburgensis in pure and mixed adapted culture derived from a methanation bubble column bioreactor

Corinne Biderre-Petit , Mbarki Mariem , Damien Courtine , Benarab Yanis , Christophe Vial et al.

Bioresource Technology, In press, 406, pp.131021. ⟨10.1016/j.biortech.2024.131021⟩

Article dans une revue hal-04621855v2

A pan‐genomic approach reveals novel Sulfurimonas clade in the ferruginous meromictic Lake Pavin

Corinne Biderre-Petit , Damien Courtine , Claire Hennequin , Pierre Galand , Stefan Bertilsson et al.

Molecular Ecology Resources, In press, ⟨10.1111/1755-0998.13923⟩

Article dans une revue hal-04381944v2

Functional diversity of microbial eukaryotes in a meromictic lake: Coupling between metatranscriptomic and a trait‐based approach

Arthur Monjot , Gisèle Bronner , Damien Courtine , Corinne Cruaud , Corinne da Silva et al.

Environmental Microbiology, In press, ⟨10.1111/1462-2920.16531⟩

Article dans une revue hal-04273967v1

Increased Pathogenicity of the Nematophagous Fungus Drechmeria coniospora Following Long-Term Laboratory Culture

Damien Courtine , Xing Zhang , Jonathan Ewbank

Frontiers in Fungal Biology, 2021, 2, ⟨10.3389/ffunb.2021.778882⟩

Article dans une revue hal-03926165v1

Thermococcus camini sp. nov., a hyperthermophilic and piezophilic archaeon isolated from a deep-sea hydrothermal vent at the Mid-Atlantic Ridge

Damien Courtine , Erwann Vince , Loïs Maignien , Xavier Philippon , Nicolas Gayet et al.

International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (7), ⟨10.1099/ijsem.0.004853⟩

Article dans une revue hal-03367146v1

Thermococcus henrietii sp. nov., a novel extreme thermophilic and piezophilic sulfur-reducing archaeon isolated from a deep-sea hydrothermal chimney

Karine Alain , Erwann Vince , Damien Courtine , Lois Maignien , Xiang Zeng et al.

International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (7), pp.004895. ⟨10.1099/ijsem.0.004895⟩

Article dans une revue hal-03322684v1

The Piezo-Hyperthermophilic Archaeon Thermococcus piezophilus Regulates Its Energy Efficiency System to Cope With Large Hydrostatic Pressure Variations

Yann Moalic , Jordan Hartunians , Cécile Dalmasso , Damien Courtine , Myriam Georges et al.

Frontiers in Microbiology, 2021, 12, pp.730231. ⟨10.3389/fmicb.2021.730231⟩

Article dans une revue hal-03413270v1

H2-dependent formate production by hyperthermophilic Thermococcales: an alternative to sulfur reduction for reducing-equivalents disposal

Sébastien Le Guellec , Elodie Leroy , Damien Courtine , Anne Godfroy , Erwan Roussel

The International Society of Microbiologial Ecology Journal, 2021, ⟨10.1038/s41396-021-01020-x⟩

Article dans une revue hal-03263886v1

Antagonistic fungal enterotoxins intersect at multiple levels with host innate immune defences

Xing Zhang , Benjamin Harding , Dina Aggad , Damien Courtine , Jia-Xuan Chen et al.

PLoS Genetics, 2021, 17 (6), pp.e1009600. ⟨10.1371/journal.pgen.1009600⟩

Article dans une revue hal-03369945v1

Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

Damien Courtine , Jan Provaznik , Jérôme Reboul , Guillaume Blanc , Vladimir Benes et al.

GigaScience, 2020, 9 (9), pp.1 - 11. ⟨10.1093/gigascience/giaa099⟩

Article dans une revue hal-02964511v1

Complete Genome Sequence of Hyperthermophilic Archaeon Thermococcus sp. EXT12c, Isolated from the East Pacific Rise 9°N

Damien Courtine , Karine Alain , Myriam Georges , Nadège Bienvenu , Hilary Morrison et al.

Genome Announcements, 2017, 5 (50), ⟨10.1128/genomeA.01385-17⟩

Article dans une revue hal-05546764v1

<em>Thermococcus piezophilus</em> sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise

Cécile Dalmasso , Philippe Oger , Gwendoline Selva , Damien Courtine , Stéphane L’haridon et al.

Systematic and Applied Microbiology, 2016, 39 (7), pp.440-444. ⟨10.1016/j.syapm.2016.08.003⟩

Article dans une revue hal-02636723v1

Draft genome sequence of the intestinal parasite Blastocystis subtype 4-isolate WR1

Ivan Wawrzyniak , Damien Courtine , Marwan Osman , Christine Hubans-Pierlot , Amandine Cian et al.

Genomics Data, 2015, 4, pp.22-23. ⟨10.1016/j.gdata.2015.01.009⟩

Article dans une revue hal-01247485v1

Trait-based approach coupled to metatranscriptomic-derived sequence similarity network: towards the depiction of the functional diversity of freshwater microbial eukaryotes

Arthur Monjot , Gisèle Bronner , Damien Courtine , Corinne Cruaud , Corinne Da Silva et al.

16th International Congress of Protistology (ICOP/ISOP — 2025), Jun 2025, Seoul, South Korea

Communication dans un congrès hal-05134808v1

Functional diversity of microbial eukaryotes in a meromictic lake: coupling between metatranscriptomic and a trait-based approach

Arthur Monjot , Gisèle Bronner , Damien Courtine , Corinne Cruaud , Corinne Da Silva et al.

IX European Congress of Protistology & Annual Congress of the International Society of Protistologists, Jul 2023, Vienna, Austria

Communication dans un congrès hal-04795139v1

Redefining the archaea Thermococcales order with the biogeographic repartition and comparative genomic analysis of more than 100 isolates.

Violette Da Cunha , Philippe Oger , Damien Courtine , Loïs Maignien , Mohamed Jebbar et al.

2022 International Workshop on Deep-Sea Microbiology,, Mohamed Jebbar, Sep 2022, Plouzane, France

Communication dans un congrès hal-04358652v1

Métabarcoding et étude de traits, vers une description de la diversité taxonomique et fonctionnelle des eucaryotes unicellulaires dans le lac Pavin

Arthur Monjot , Gisèle Bronner , Damien Courtine , Corinne Cruaud , Corinne Da Silva et al.

Journées Thématiques de l'AFEM, Jun 2022, Clermont-Ferrand, France

Communication dans un congrès hal-04795083v2

Unveiling the dynamic transcriptome of the microsporidian parasite Anncaliia algerae during Human cell invasion

Ivan Wawrzyniak , Réginald Florian Akossi , Damien Courtine , Frédéric Delbac , Eric Peyretaillade

JOBIM, Jun 2026, Strasbourg, France

Poster de conférence hal-05736313v1

Impact de la désoxygénation sur la répartition et la dynamique des microorganismes impliqués dans la production de gaz à effet de serre dans le lac d’Aydat

Sarah Donnadieu , Léa Combes , Damien Courtine , Anne Mone , Maïlysia Scheepers et al.

AFEM 2025 : 12ème colloque de l'Association Francophone d'Écologie Microbienne, Nov 2025, Beaune, France.

Poster de conférence hal-05364931v1

Metapangenomic analysis of the metabolic pathway evolution within the Thermococcales

Ryan Catchpole , Clémence Lauden , Damien Courtine , Evelyne Marguet , Stéphanie Fouteau et al.

Pangenome 2026 One health, Dec 2025, Valencia (Espagne), Spain

Poster de conférence hal-05504972v1

MetaPangenomic analysis within the Thermococcales

Clémence Lauden , Ryan Catchepole , Phil M. Oger , Damien Courtine , Loïs Maignien et al.

EMBO Workshop Molecular biology of Archaea (MBoA) 2024, Jun 2024, Palaiseau, France. 2024

Poster de conférence hal-04707270v1

Functional diversity of microbial eukaryotes in a meromictic lake: coupling between metatranscriptomic and a trait-based approach

Arthur Monjot , Gisèle Bronner , Damien Courtine , Corinne Cruaud , Corinne Da Silva et al.

26ème Journées de l’École Doctorale Sciences de la Vie, Santé, Agronomie, Environnement, Jun 2023, Clermont-Ferrand, France

Poster de conférence hal-04795229v1

Draft genome sequence of the anaerobic intestinal parasite Blastocystis subtype 4 (ST4)

Ivan Wawrzyniak , Damien Courtine , Céline Nourrisson , Philippe Poirier , Amandine Cian et al.

Bioinformatique pour la Genomique Environnementale, May 2014, Lyon, France

Poster de conférence hal-03572843v1

Comparative genomics of closely related Thermococcus isolates, a genus of hyperthermophilic Archaea

Damien Courtine

Genomics [q-bio.GN]. Université de Bretagne occidentale - Brest, 2017. English. ⟨NNT : 2017BRES0149⟩

Thèse tel-01900466v2

Thermococcales pangenome uncovers new genera and modular evolution

Ryan Catchpole , Clémence Lauden , Damien Courtine , Evelyne Marguet , Stéphanie Fouteau et al.

2026

Pré-publication, Document de travail hal-05786714v1

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