Damien Hinsinger

Responsable de plateforme génomique

Documents

Affiliation actuelle

Etude du Polymorphisme des Génomes Végétaux (EPGV)

Identifiants chercheurs

Contact

Publications

	Assembly and annotation of the 'Golden Delicious' Doubled-Haploid GDDH18 apple genome Marine Salson , Christelle Lalanne , Maryline Cournol , Sylvain Hanteville , Damien Hinsinger et al. G3, 2026, ⟨10.1093/g3journal/jkag104⟩ Article dans une revue hal-05606946v2
	Nuclear and organelle genome assemblies of 5 Cucumis melo L. accessions, Ananas, Canton, PI 414723, Vedrantais, and Zhimali, belonging to diverse botanical groups Javier Belinchon-Moreno , Aurelie Berard , Aurelie Canaguier , Isabelle Le-Clainche , Vincent Rittener-Ruff et al. G3, 2025, 15 (7), ⟨10.1093/g3journal/jkaf098⟩ Article dans une revue hal-05193547v1
	Chromosome-scale assembly of European flax (Linum usitatissimum L.) genotypes and pangenomic analysis provide genomic tools to improve breeding Boris B Demenou , Adama Ndar , Christophe P Pineau , Damien D Hinsinger , William Marande et al. BMC Genomics, 2025, 26 (1), pp.1008. ⟨10.1186/s12864-025-12248-8⟩ Article dans une revue hal-05363409v1
	Phylogenomics and a revised tribal classification of subfamily Dipterocarpoideae (Dipterocarpaceae) Tijana Cvetković , Damien Hinsinger , Daniel Thomas , Jan Wieringa , Elango Velautham et al. Taxon, the journal of the International Association for Plant Taxonomy, 2022, 71 (1), pp.85-102. ⟨10.1002/tax.12648⟩ Article dans une revue hal-03935018v1
	Genetic Variability in Balkan Paleoendemic Resurrection Plants Ramonda serbica and R. nathaliae Across Their Range and in the Zone of Sympatry Maja Lazarević , Sonja Siljak-Yakovlev , Agathe Sanino , Marjan Niketić , Françoise Lamy et al. Frontiers in Plant Science, 2022, 13, ⟨10.3389/fpls.2022.873471⟩ Article dans une revue hal-03933886v1
	Genome-wide supermatrix analyses of maples (Acer, Sapindaceae) reveal recurring inter-continental migration, mass extinction, and rapid lineage divergence Fabiola Areces-Berazain , D. D. Hinsinger , Joeri Strijk Genomics, 2021, 113 (2), pp.681-692. ⟨10.1016/j.ygeno.2021.01.014⟩ Article dans une revue hal-03370594v1
	Phylogenomics resolves deep subfamilial relationships in Malvaceae s.l. Tijana Cvetković , Fabiola Areces-Berazain , D. D. Hinsinger , Daniel Thomas , Jan Wieringa et al. G3, 2021, 11 (7), ⟨10.1093/g3journal/jkab136⟩ Article dans une revue hal-03370590v1
	Chromosome‐level reference genome of the soursop ( Annona muricata ): A new resource for Magnoliid research and tropical pomology Joeri Strijk , D. D. Hinsinger , Mareike Roeder , Lars Chatrou , Thomas Couvreur et al. Molecular Ecology Resources, 2021, 21 (5), pp.1608-1619. ⟨10.1111/1755-0998.13353⟩ Article dans une revue hal-03370609v1
	ECuADOR—Easy Curation of Angiosperm Duplicated Organellar Regions, a tool for cleaning and curating plastomes assembled from next generation sequencing pipelines Angelo Armijos Carrion , D. D. Hinsinger , Joeri Strijk PeerJ, 2020, 8, pp.e8699. ⟨10.7717/peerj.8699⟩ Article dans une revue hal-03370620v1
	Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae) Angelo Damian Armijos Carrion , D. D. Hinsinger , Joeri Sergej Strijk Mitochondrial DNA Part B Resources, 2020, 5 (1), pp.379-381. ⟨10.1080/23802359.2019.1703590⟩ Article dans une revue hal-03370630v1
	Plastome comparative genomics in maples resolves the infrageneric backbone relationships Fabiola Areces-Berazain , Yixi Wang , D. D. Hinsinger , Joeri Strijk PeerJ, 2020, 8, pp.e9483. ⟨10.7717/peerj.9483⟩ Article dans une revue hal-03370614v1
	Museomics for reconstructing historical floristic exchanges: Divergence of stone oaks across Wallacea Joeri Strijk , Nguyen Van Ngoc , Joan Pereira , J. Slik , Rahayu Sukri et al. PLoS ONE, 2020, 15 (5), pp.e0232936. ⟨10.1371/journal.pone.0232936⟩ Article dans une revue hal-03370625v1
	The plastome sequence of Laurus azorica (Seub.) Franco, an endemic tree species of the Azores islands Xi-Jian Liang , D. D. Hinsinger , Rui Bento Elias , Joeri Sergej Strijk Mitochondrial DNA Part B Resources, 2019, 4 (1), pp.363-365. ⟨10.1080/23802359.2018.1545536⟩ Article dans une revue hal-03370647v1
	Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research Joeri Strijk , D. D. Hinsinger , Fengping Zhang , Kunfang Cao GigaScience, 2019, 8 (11), ⟨10.1093/gigascience/giz136⟩ Article dans une revue (data paper) hal-03370633v1
	Plastome of Quercus xanthoclada and comparison of genomic diversity amongst selected Quercus species using genome skimming D. D. Hinsinger , Joeri Sergej Strijk PhytoKeys, 2019, 132, pp.75-89. ⟨10.3897/phytokeys.132.36365⟩ Article dans une revue hal-03370655v1
	Exploring evolution and diversity of Chinese Dipterocarpaceae using next-generation sequencing Tijana Cvetković , D. D. Hinsinger , Joeri Sergej Strijk Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-48240-y⟩ Article dans une revue hal-03370635v1
	Characterization of the complete chloroplast genome of endangered Cycads Zamia fischeri Miq. ex Lem Jin-Yan Lei , D. D. Hinsinger , Guo-Feng Jiang Mitochondrial DNA Part B Resources, 2018, 3 (2), pp.1059-1061. ⟨10.1080/23802359.2018.1508387⟩ Article dans une revue hal-03370662v1
	The complete mitochondrial genome of the Basidiomycete fungus Pleurotus cornucopiae (Paulet) Rolland Li-Ming Xu , D. D. Hinsinger , Guo-Feng Jiang Mitochondrial DNA Part B Resources, 2018, 3 (1), pp.73-75. ⟨10.1080/23802359.2017.1422405⟩ Article dans une revue hal-03370666v1
	The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts Tianhui Yu , D. D. Hinsinger , Joeri Sergej Strijk , Alison Kim Shan Wee Mitochondrial DNA Part B Resources, 2018, 3 (2), pp.500-502. ⟨10.1080/23802359.2018.1463828⟩ Article dans une revue hal-03370663v1
	Fishing for barcodes in the Torrent: from COI to complete mitogenomes on NGS platforms Damien Hinsinger , Régis Debruyne , Maeva Thomas , Gaël Denys , Marion I. Mennesson et al. DNA Barcodes, 2015, 3 (1), pp.170-186. ⟨10.1515/dna-2015-0019⟩ Article dans une revue mnhn-02309917v1
	The phylogeography of Eurasian Fraxinus species reveals ancient transcontinental reticulation D. Hinsinger , M. Gaudeul , A. Couloux , J. Bousquet , Nathalie Frascaria-Lacoste Molecular Phylogenetics and Evolution, 2014, 77, pp.223-237 Article dans une revue hal-01569392v1
	The Phylogeny and Biogeographic History of Ashes (Fraxinus, Oleaceae) Highlight the Roles of Migration and Vicariance in the Diversification of Temperate Trees D.D. Hinsinger , Jolly Basak , Myriam Gaudeul , Corinne Cruaud , Paola Bertolino et al. PLoS ONE, 2013, 8 (11), pp.e80431. ⟨10.1371/journal.pone.0080431⟩ Article dans une revue hal-01569388v1
	Deciduous Trees and the Application of Universal DNA Barcodes: A Case Study on the Circumpolar Fraxinus M. Arca , D.D. Hinsinger , C. Cruaud , A. Tillier , J. Bousquet et al. PLoS ONE, 2012, 7 (3), ⟨10.1371/journal.pone.0034089⟩ Article dans une revue hal-01569306v1
	Phylogenetic footprints of an Antarctic radiation: The Trematominae (Notothenioidei, Teleostei) A. -C. Lautredou , D. D. Hinsinger , C. Gallut , C. -H. C. Cheng , M. Berkani et al. Molecular Phylogenetics and Evolution, 2012, 65 (1), pp.87-101. ⟨10.1016/j.ympev.2012.05.032⟩ Article dans une revue istex hal-01544915v1
	Pseudorhabdosynochus venus n. sp. (Monogenea, Diplectanidae) from Epinephelus howlandi (Perciformes: Serranidae) off New Caledonia Jean-Lou Justine , Damien Hinsinger Systematic Parasitology, 2006, 92, pp.155-160 Article dans une revue hal-00079778v1

	The genome of G. fossarum: a genomic toolkit to investigate endocrine and metabolic disruption in amphipod sentinel species Davide Degli Esposti , Damien Hinsinger , Joao Sousa , Patrice Baa-Puyoulet , Aurélie Bérard et al. Colloque INRAE Genomics, Jun 2025, Clermon-Ferrand, France Communication dans un congrès hal-05137926v1
	Assessing the diversity of the Espelette pepper landrace in the French Basque country Kritika Adhikari , Sonia Elbelt , Anne Massire , Paul Dumeaux , Damien Hinsinger et al. Colloque INRAE Genomics 2025, Jun 2025, Clermont - Ferrand, France. 1 p Communication dans un congrès hal-05600409v1
	The genome of G. fossarum: a genomic toolkit to investigate endocrine and metabolic disruption in amphipod sentinel species Davide Degli Esposti , Damien Hinsinger , Joao Sousa , Patrice Baa-Puyoulet , Aurélie Bérard et al. 20th International Conference on Amphipoda, Sep 2025, Lodz, Poland Communication dans un congrès hal-05419622v1
	Nanopore Only Assembly of Populus deltoides with Trio Binning Illustrates Benefits of Diploid Assembly for poplars Damien Hinsinger PAG XXI. Plant and Animal Genome Conference, Jan 2024, San Diego (California), United States Communication dans un congrès hal-04670388v1
	Evolution des technologies de séquençage et génotypage Patricia Faivre Rampant , Damien Hinsinger séminaire INRAE, Nov 2022, Orléans (45), France Communication dans un congrès hal-04670356v1
	Exploitation de la puissance du séquençage pour l’amélioration des plantes Damien Hinsinger Séminaire Genoscope, Mar 2022, Evry, France Communication dans un congrès hal-03975365v1
	Séquençage sélectif Nanopore ( chez une espèce maraichère, le melon : premiers essais) Damien Hinsinger AG France Genomique, Jun 2022, Paris, France Communication dans un congrès hal-04670364v1
	Exploitation de la puissance du séquençage pour l’amélioration des plantes Damien Hinsinger Mini congrès, CEA - Genoscope, Jun 2022, Evry, France Communication dans un congrès hal-03937956v1
	Allegro Genotyping solution : Application in crops Damien Hinsinger Séminaire EFFOR, May 2021, Evry (en distanciel), France Communication dans un congrès hal-04670462v1

	Building the melon pan-NLRome from nanopore Adaptive Sampling reads Javier Belinchon-Moreno , Aurélie Bérard , Aurélie Canaguier , Isabelle Le Clainche , Pascale Mistral et al. London Calling, May 2026, Londres, United Kingdom. 1 p Poster de conférence hal-05662990v1
	Développement d'un workflow flexible et reproductible pour l'estimation de la FRéquence des HAPlotypes (FRHAP) Abdelkarim Wahnou , Aurélie Canaguier , Raphaël Minguella , Stéphane Nicolas , Patricia Faivre Rampant et al. France Genomique, Jun 2026, Paris (maison des associations), France Poster de conférence hal-05673423v1
	A flexible Snakemake workflow for haplotypefrequency estimation in tGBS data Abdelkarim Wahnou , Damien Hinsinger , Stéphane Nicolas , Raphaëlle Minguella , Patricia Faivre Rampant JOBIM, Jun 2026, Strasbourg, France. 1 p Poster de conférence hal-05678523v1
	Targeted GBS provides an efficient way to characterize haplotypic diversity and allele frequency in pooled maize landraces Aurélie Canaguier , Raphaël Minguella , Delphine Madur , Aurélie Bérard , Isabelle Le Clainche et al. 68th Annual Maize Genetics meeting, Feb 2026, Cologne, Germany Poster de conférence hal-05688035v1
	Deciphering the genetic architecture of plant-pathogen interactions using co-GWAS Moustapha Boubacar-Abdou , Vincent Rittener , Pascale Mistral , Karine Leyre , Jacques Lagnel et al. Journées Jeunes Chercheurs du département BAP 2025, May 2025, Bordeaux, France Poster de conférence hal-05127001v1
	Un an de MGI à l'EPGV Isabelle Le Clainche , Aurélie Bérard , Romain Mesnil , Damien Hinsinger , Patricia Faivre Rampant AG France Génomique, Jun 2024, Evry courcouronnes, France Poster de conférence hal-04670299v1
	Pipeline for Haplotype Frequencies Estimation from Pooled Targeted Sequencing in Maize Minguella Raphaël , Aurélie Canaguier , Delphine Madur , Aurélie Bérard , Isabelle Le Clainche et al. AG France Génomique, Jun 2024, Evry courcouronnes, France. 2013, ⟨10.1093/molbev/mst016⟩ Poster de conférence hal-04670307v1
	A chromosome-level assembly of lavender ‘Maillette’ using long-reads and a newly generated linkage map Aurélie Canaguier , Damien Hinsinger , Aurélie Bérard , Isabelle Le Clainche , Berline Fopa Fomeju et al. PAG XXI. Plant and Animal Genome Conference, Jan 2024, San Diego (California), United States. ⟨10.1371/journal.pone.0243853⟩ Poster de conférence hal-04670399v1
	Estimation of Haplotype Frequencies from Pooled Targeted Sequencing in Maize Landraces Minguella Raphaël , Aurélie Canaguier , Delphine Madur , Damien Hinsinger , Stephane Nicolas et al. 2ème carrefour de la sélection maïs, May 2024, Saclay, France. 2013, ⟨10.1093/molbev/mst016⟩ Poster de conférence hal-04670321v1
	Long Reads for Long-Term Goals : A Genome Resource for Lavander Genetic Improvement Berline Fopa Fomeju , Aurélie Berard , Isabelle Le Clainche , Aurélie Canaguier , Elodie Belmonte et al. PAG XXX Plant and Animal Genome Conference, Jan 2023, San Diego (California), United States Poster de conférence hal-03937877v1
	Feedback on tGBS with Allegro : Does it hit the target ? Aurélie Berard , Aurélie Canaguier , Romane Guilbaud , Isabelle Le Clainche , Marie-Christine Le Paslier et al. PAG XXX. Plant and Animal Genome, Jan 2023, San Diego (California), United States. , ⟨10.15454/4NYHD6⟩ Poster de conférence hal-03937923v1
	La fibre génomique du Lin Damien Hinsinger , Romane Guilbaud , Sandrine Contenot , Aurélie Canaguier , Patricia Faivre-Rampant et al. 30ème édition du Festival du Lin et de la Fibre Artistique, Jul 2022, Saint-Pierre-Le-Viger, France. Poster de conférence hal-03937438v1
	Étude du polymorphisme des génomes végétaux Damien Hinsinger , Romane Guilbaud , Sandrine Contenot , Aurélie Canaguier , Patricia Faivre-Rampant et al. Colloque INRAE Genomics, May 2022, Orléans, France. Poster de conférence hal-03935707v1

	Linkage and association mapping coupled with pan-genome analyses of Vat homologs reveal QTLs and alleles for aphid resistance in melon Javier Belinchon-Moreno , Eva Coindre , Severine Monnot , Aurelie Berard , Aurelie Canaguier et al. 2026 Pré-publication, Document de travail hal-05599251v1
	Intra-specific NLR allelic diversity and genomic landscape for plant resistance association studies Javier Belinchon-Moreno , Aurelie Berard , Aurelie Canaguier , Isabelle Le-Clainche , Pascale Mistral et al. 2025 Pré-publication, Document de travail hal-05363423v1
	Nanopore adaptive sampling to identify the NLR-gene family in melon (Cucumis melo L.) Javier Belinchon-Moreno , Aurelie Berard , Aurelie Canaguier , Veronique Chovelon , Corinne Cruaud et al. 2024 Pré-publication, Document de travail hal-04670606v1
	The soursop genome and comparative genomics of basal angiosperms provide new insights on evolutionary incongruence Joeri Strijk , D. D. Hinsinger , Mareike Roeder , Lars Chatrou , Thomas Couvreur et al. 2021 Pré-publication, Document de travail hal-03370658v1

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Damien Hinsinger

Publications

Publications

Assembly and annotation of the 'Golden Delicious' Doubled-Haploid GDDH18 apple genome

Nuclear and organelle genome assemblies of 5 Cucumis melo L. accessions, Ananas, Canton, PI 414723, Vedrantais, and Zhimali, belonging to diverse botanical groups

Chromosome-scale assembly of European flax (Linum usitatissimum L.) genotypes and pangenomic analysis provide genomic tools to improve breeding

Phylogenomics and a revised tribal classification of subfamily Dipterocarpoideae (Dipterocarpaceae)

Genetic Variability in Balkan Paleoendemic Resurrection Plants Ramonda serbica and R. nathaliae Across Their Range and in the Zone of Sympatry

Genome-wide supermatrix analyses of maples (Acer, Sapindaceae) reveal recurring inter-continental migration, mass extinction, and rapid lineage divergence

Phylogenomics resolves deep subfamilial relationships in Malvaceae s.l.

Chromosome‐level reference genome of the soursop ( Annona muricata ): A new resource for Magnoliid research and tropical pomology

ECuADOR—Easy Curation of Angiosperm Duplicated Organellar Regions, a tool for cleaning and curating plastomes assembled from next generation sequencing pipelines

Genomics of the critically endangered monotypic genus Sinopora: the plastome of S. hongkongensis (Lauraceae)

Plastome comparative genomics in maples resolves the infrageneric backbone relationships

Museomics for reconstructing historical floristic exchanges: Divergence of stone oaks across Wallacea

The plastome sequence of Laurus azorica (Seub.) Franco, an endemic tree species of the Azores islands

Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research

Plastome of Quercus xanthoclada and comparison of genomic diversity amongst selected Quercus species using genome skimming

Exploring evolution and diversity of Chinese Dipterocarpaceae using next-generation sequencing

Characterization of the complete chloroplast genome of endangered Cycads Zamia fischeri Miq. ex Lem

The complete mitochondrial genome of the Basidiomycete fungus Pleurotus cornucopiae (Paulet) Rolland

The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts

Fishing for barcodes in the Torrent: from COI to complete mitogenomes on NGS platforms

The phylogeography of Eurasian Fraxinus species reveals ancient transcontinental reticulation

The Phylogeny and Biogeographic History of Ashes (Fraxinus, Oleaceae) Highlight the Roles of Migration and Vicariance in the Diversification of Temperate Trees

Deciduous Trees and the Application of Universal DNA Barcodes: A Case Study on the Circumpolar Fraxinus

Phylogenetic footprints of an Antarctic radiation: The Trematominae (Notothenioidei, Teleostei)

Pseudorhabdosynochus venus n. sp. (Monogenea, Diplectanidae) from Epinephelus howlandi (Perciformes: Serranidae) off New Caledonia

The genome of G. fossarum: a genomic toolkit to investigate endocrine and metabolic disruption in amphipod sentinel species

Assessing the diversity of the Espelette pepper landrace in the French Basque country

The genome of G. fossarum: a genomic toolkit to investigate endocrine and metabolic disruption in amphipod sentinel species

Nanopore Only Assembly of Populus deltoides with Trio Binning Illustrates Benefits of Diploid Assembly for poplars

Evolution des technologies de séquençage et génotypage

Exploitation de la puissance du séquençage pour l’amélioration des plantes

Séquençage sélectif Nanopore ( chez une espèce maraichère, le melon : premiers essais)

Exploitation de la puissance du séquençage pour l’amélioration des plantes

Allegro Genotyping solution : Application in crops

Building the melon pan-NLRome from nanopore Adaptive Sampling reads

Développement d'un workflow flexible et reproductible pour l'estimation de la FRéquence des HAPlotypes (FRHAP)

A flexible Snakemake workflow for haplotypefrequency estimation in tGBS data

Targeted GBS provides an efficient way to characterize haplotypic diversity and allele frequency in pooled maize landraces

Deciphering the genetic architecture of plant-pathogen interactions using co-GWAS

Un an de MGI à l'EPGV

Pipeline for Haplotype Frequencies Estimation from Pooled Targeted Sequencing in Maize

A chromosome-level assembly of lavender ‘Maillette’ using long-reads and a newly generated linkage map

Estimation of Haplotype Frequencies from Pooled Targeted Sequencing in Maize Landraces

Long Reads for Long-Term Goals : A Genome Resource for Lavander Genetic Improvement

Feedback on tGBS with Allegro : Does it hit the target ?

La fibre génomique du Lin

Étude du polymorphisme des génomes végétaux

Linkage and association mapping coupled with pan-genome analyses of Vat homologs reveal QTLs and alleles for aphid resistance in melon

Intra-specific NLR allelic diversity and genomic landscape for plant resistance association studies

Nanopore adaptive sampling to identify the NLR-gene family in melon (Cucumis melo L.)

The soursop genome and comparative genomics of basal angiosperms provide new insights on evolutionary incongruence