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Daniel Jacob

I am responsible for the design and/or adaptation of (bio)informatics tools facilitating the capture, storage and use of experimental data in the field of metabolomics and associated metadata. I am also responsible, through scientific monitoring of the field, for the development and/or adaptation of data processing methods (data processing & data mining), for the development and/or deployment of solutions allowing the exploration (data explorer), visualization (data visualization) and data accessibility (open data, FAIR).
40%
Open access
162
Documents
Current affiliations
  • 1002364
  • 1075986
Researcher identifiers

Presentation

Research domains


Skills

Data mining Data management

Publications

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Development, Validation, and Use of 1H-NMR Spectroscopy for Evaluating the Quality of Acerola-Based Food Supplements and Quantifying Ascorbic Acid

Asma Bourafai-Aziez , Daniel Jacob , Gwladys Charpentier , Emmanuel Cassin , Guillaume Rousselot et al.
Molecules, 2022, 27 (17), pp.5614. ⟨10.3390/molecules27175614⟩
Journal articles hal-03767989v1
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Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience

Thomas Dussarrat , Sylvain Prigent , Claudio Latorre , Stéphane Bernillon , Amélie Flandin et al.
New Phytologist, 2022, 234 (5), pp.1614-1628. ⟨10.1111/nph.18095⟩
Journal articles hal-03626433v1
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PeakForest: a multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management

Nils Paulhe , Cécile Canlet , Annelaure Damont , Lindsay Peyriga , Stéphanie Durand et al.
Metabolomics, 2022, 18 (6), pp.40. ⟨10.1007/s11306-022-01899-3⟩
Journal articles hal-03695453v1
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Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis

Maria Urrutia , Melisande Blein-Nicolas , Sylvain Prigent , Stéphane Bernillon , Catherine Deborde et al.
Plant, Cell and Environment, 2021, 44 (5), pp.1504-1521. ⟨10.1111/pce.13993⟩
Journal articles hal-03107184v1
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Putative imbalanced amino acid metabolism in rainbow trout long term fed a plant-based diet as revealed by 1 H-NMR metabolomics

Catherine Deborde , Blandine Madji Hounoum , Annick Moing , Mickaël Maucourt , Daniel Jacob et al.
Journal of Nutritional Science, 2021, 10, pp.e13. ⟨10.1017/jns.2021.3⟩
Journal articles hal-03163223v1
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FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles

Romain David , Laurence Mabile , Alison Specht , Sarah Stryeck , Mogens Thomsen et al.
CODATA Data Science Journal, 2020, 19 (32), pp.1-11. ⟨10.5334/dsj-2020-032⟩
Journal articles hal-02483307v2
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Making experimental data tables in the life sciences more FAIR: a pragmatic approach

Daniel Jacob , Romain David , Sophie Aubin , Yves Gibon
GigaScience, 2020, 9 (12), pp.giaa144. ⟨10.1093/gigascience/giaa144⟩
Journal articles hal-02883355v4
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Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity

Annick Moing , J. William Allwood , Asaph Aharoni , John Baker , Michael Beale et al.
Metabolites, 2020, 10 (3), pp.121. ⟨10.3390/metabo10030121⟩
Journal articles hal-02533195v1
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Integrative Metabolomics for Assessing the Effect of Insect (Hermetia illucens) Protein Extract on Rainbow Trout Metabolism

Simon Roques , Catherine Deborde , Laurence Guimas , Yann Marchand , Nadege Richard et al.
Metabolites, 2020, 10 (3), pp.83. ⟨10.3390/metabo10030083⟩
Journal articles hal-02570723v1

Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species

Léa Roch , Sylvain Prigent , Holger Klose , Coffi-Belmys Cakpo , Bertrand Beauvoit et al.
Journal of Experimental Botany, 2020, 71 (19), pp.5823-5836. ⟨10.1093/jxb/eraa302⟩
Journal articles hal-02904041v1
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Hyperpolarized NMR Metabolomics at Natural 13 C Abundance

Arnab Dey , Benoit Charrier , Estelle Martineau , Catherine Deborde , Elodie Gandriau et al.
Analytical Chemistry, 2020, 92 (22), pp.14867-14871. ⟨10.1021/acs.analchem.0c03510⟩
Journal articles hal-03035414v1

Optimizing 1D 1H-NMR profiling of plant samples for high throughput analysis: extract preparation, standardization, automation and spectra processing

Catherine Deborde , Jean-Xavier J.-X. Fontaine , Daniel Jacob , Adolfo Botana , Valerie Nicaise et al.
Metabolomics, 2019, 15 (3), pp.1-12. ⟨10.1007/s11306-019-1488-3⟩
Journal articles hal-02622523v1
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PhenoMeNal: processing and analysis of metabolomics data in the cloud

Kristian Peters , James Bradbury , Sven Bergmann , Marco Capuccini , Marta Cascante et al.
GigaScience, 2019, 8 (2), pp.giy149. ⟨10.1093/gigascience/giy149⟩
Journal articles hal-02627233v1
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Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers

Olivier Fernandez , Maria Urrutia , Thierry Berton , Stéphane Bernillon , Catherine Deborde et al.
Metabolomics, 2019, 15 (4), pp.56. ⟨10.1007/s11306-019-1515-4⟩
Journal articles hal-02487236v1
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NMR-Based Tissular and Developmental Metabolomics of Tomato Fruit

Martine Lemaire-Chamley , Fabien F. Mounet , Catherine Deborde , Mickael Maucourt , Daniel Jacob et al.
Metabolites, 2019, 9 (5), pp.93. ⟨10.3390/metabo9050093⟩
Journal articles hal-02621416v1

nmrML: a community supported open data standard for the description, storage, and exchange of NMR data.

Daniel Schober , Daniel Jacob , Michael Wilson , Joseph A Cruz , Ana Marcu et al.
Analytical Chemistry, 2018, 90 (1), pp.649-656. ⟨10.1021/acs.analchem.7b02795⟩
Journal articles hal-02621139v1

Intestinal microbiota in rainbow trout, Oncorhynchus mykiss, fed diets with different levels of fish-based and plant ingredients: A correlative approach with some plasma metabolites

Francois Joël Gatesoupe , Benoit Fauconneau , Catherine Deborde , Blandine Madji Hounoum , Daniel Jacob et al.
Aquaculture Nutrition, 2018, 24 (5), pp.1563-1576. ⟨10.1111/anu.12793⟩
Journal articles hal-01901326v1

Characterization of GMO or glyphosate effects on the composition of maize grain and maize-based diet for rat feeding

Stéphane Bernillon , Mickael Maucourt , Catherine Deborde , Sylvain Chéreau , Daniel Jacob et al.
Metabolomics, 2018, 14 (36), pp.1-12. ⟨10.1007/s11306-018-1329-9⟩
Journal articles hal-02624451v1

Metabotyping of 30 maize hybrids under early-sowing conditions reveals potential marker-metabolites for breeding

Nadia Lamari , Vanessa Zhendre , Maria Urrutia , Stéphane Bernillon , Mickael Maucourt et al.
Metabolomics, In press, 14 (10), pp.132. ⟨10.1007/s11306-018-1427-8⟩
Journal articles hal-02539641v1

Plant metabolism as studied by NMR spectroscopy

Catherine Deborde , Annick Moing , Léa Roch , Daniel Jacob , Dominique Rolin et al.
Progress in Nuclear Magnetic Resonance Spectroscopy, 2017, 102-103, pp.61-97. ⟨10.1016/j.pnmrs.2017.05.001⟩
Journal articles hal-01602524v1

NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics

Daniel Jacob , Catherine Deborde , Marie Lefebvre , Mickael Maucourt , Annick Moing et al.
Metabolomics, 2017, 13 (4), pp.36. ⟨10.1007/s11306-017-1178-y⟩
Journal articles hal-01606304v1
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Highly Repeatable Dissolution Dynamic Nuclear Polarization for Heteronuclear NMR Metabolomics

Aurélien Bornet , Mickael Maucourt , Catherine Deborde , Daniel Jacob , Jonas Milani et al.
Analytical Chemistry, 2016, 88 (12), pp.6179-6183. ⟨10.1021/acs.analchem.6b01094⟩
Journal articles hal-01366193v1

Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Reza Salek , Steffen Neumann , Daniel Schober , Jan Hummel , Kenny Billiau et al.
Metabolomics, 2015, 11 (6), pp.1598-1599. ⟨10.1007/s11306-015-0822-7⟩
Journal articles hal-02630736v1
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Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics

Franck Giacomoni , Gildas Le Corguillé , Misharl Monsoor , Marion Landi , Pierre Pericard et al.
Bioinformatics, 2015, 31 (9), pp.1493-1495. ⟨10.1093/bioinformatics/btu813⟩
Journal articles hal-01123263v1

Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships.

Camille Bénard , Stéphane Bernillon , Benoit Biais , Sonia Osorio , Mickael M. Maucourt et al.
Journal of Experimental Botany, 2015, 66 (11), pp.3391-404. ⟨10.1093/jxb/erv151⟩
Journal articles hal-02641303v1
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Can we Trust Untargeted Metabolomics: Results of the Metabo-ring Initiative, a Large-scale Multi-instruments Inter-laboratoire Study

Jean-Charles Martin , Mathieu Maillot , Gerard Mazerolles , Alexandre Verdu , Bernard Lyan et al.
Metabolomics, 2015, 11 (4), pp.807-821. ⟨10.1007/s11306-014-0740-0⟩
Journal articles hal-01123343v1
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COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Reza M. Salek , Steffen Neumann , Daniel Schober , Jan Hummel , Kenny Billiau et al.
Metabolomics, 2015, 11 (6), pp.Journal no. 11306. ⟨10.1007/s11306-015-0810-y⟩
Journal articles hal-01165673v1
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Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats

Virginie Dupuy , Pascal Sirand-Pugnet , Eric Baranowski , Aurélien Barré , Marc Breton et al.
Genome Announcements, 2013, 1 (3), pp.e00354-13. ⟨10.1128/genomeA.00354-13⟩
Journal articles hal-00907450v1

An efficient spectra processing method for metabolite identification from (1)H-NMR metabolomics data.

Daniel Jacob , Catherine C. Deborde , Annick Moing
Analytical and Bioanalytical Chemistry, 2013, 405 (15), pp.5049-61. ⟨10.1007/s00216-013-6852-y⟩
Journal articles hal-02648547v1
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Draft Genome Sequences of Mycoplasma auris and Mycoplasma yeatsii, Two Species of the Ear Canal of Caprinae

Emilie Dordet-Frisoni , Eric Baranowski , Aurélien Barré , Alain Blanchard , Marc Breton et al.
Genome Announcements, 2013, 1 (3), pp.e00280-13. ⟨10.1128/genomeA.00280-13⟩
Journal articles hal-00907449v1
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Draft Genome Sequences of Mycoplasma alkalescens, Mycoplasma arginini, and Mycoplasma bovigenitalium, Three Species with Equivocal Pathogenic Status for Cattle

Lucía Manso-Silván , Florence Tardy , Eric Baranowski , Aurélien Barré , Alain Blanchard et al.
Genome Announcements, 2013, 1 (3), pp.e00348-13. ⟨10.1128/genomeA.00348-13⟩
Journal articles hal-00907454v1
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Deciphering genetic diversity and inheritance of tomato fruit weight and composition through a systems biology approach

Laura Pascual-Banuls , Jiaxin Xu , Benoit Biais , Mickael Maucourt , Patricia Ballias et al.
Journal of Experimental Botany, 2013, 64 (18), pp.1-16. ⟨10.1093/jxb/ert349⟩
Journal articles hal-01208665v1

Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction

Olivier Langella , Benoit B. Valot , Daniel Jacob , Thierry T. Balliau , Raphaël-Gauthier Flores et al.
Proteomics, 2013, 13 (9), pp.1457-1466. ⟨10.1002/pmic.201200564⟩
Journal articles hal-02651260v1

Toward interoperable bioscience data

Susanna-Assunta Sansone , Philippe Rocca-Serra , Dawn Field , Eamonn Maguire , Chris Taylor et al.
Nature Genetics, 2012, 44 (2), pp.121-126. ⟨10.1038/ng.1054⟩
Journal articles hal-00695792v1
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MetaBase-the wiki-database of biological databases

Dan M. Bolser , Pierre-Yves Chibon , Sungsam Gong , Daniel Jacob , Victoria Fabia Dominguez del Angel et al.
Nucleic Acids Research, 2012, 40 (1), pp.D1250-D1254. ⟨10.1093/nar/gkr1099⟩
Journal articles hal-02648461v1
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Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective

François Thiaucourt , Lucía Manso-Silván , Woubit Salah , Valérie Barbe , Benoit Vacherie et al.
BMC Genomics, 2011, 12, pp.114 : 1-19. ⟨10.1186/1471-2164-12-114⟩
Journal articles hal-02643828v1
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MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles.

Hélène Ferry-Dumazet , Laurent Gil , Catherine Deborde , Annick Moing , Stéphane Bernillon et al.
BMC Plant Biology, 2011, 11, pp.104. ⟨10.1186/1471-2229-11-104⟩
Journal articles hal-00645944v1

MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant 1H-NMR metabolomic profiles

H. Ferry-Dumazet , L. Gil , C. Deborde , Annick Moing , Stéphane Bernillon et al.
BMC Plant Biology, 2011, 11:104, pp.10.1186/1471-2229-11-104
Journal articles hal-00648167v1
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Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity

Laurent X. Nouvel , Pascal Sirand-Pugnet , Marc S. Marenda , Valérie Barbe , Sophie Mangenot et al.
BMC Genomics, 2010, 11, pp.86. ⟨10.1186/1471-2164-11-86⟩
Journal articles hal-02660112v1

An integrative genomics approach for deciphering the complex interactions between ascorbate metabolism and fruit growth and composition in tomato.

Virginie Garcia , Rebecca Stevens , Laurent Gil , Louise Gilbert , Noé Gest et al.
Comptes Rendus Biologies, 2009, 332 (11), pp.1007-21. ⟨10.1016/j.crvi.2009.09.013⟩
Journal articles hal-00645936v1
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Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.

Sabine Pereyre , Pascal Sirand-Pugnet , Laure Beven , Alain Charron , Hélène Renaudin et al.
PLoS Genetics, 2009, 5 (10), pp.e1000677. ⟨10.1371/journal.pgen.1000677⟩
Journal articles hal-00645937v1

1H NMR, GC−EI-TOFMS, and data set correlation for fruit metabolomics: application to spatial metabolite analysis in melon

Benoit Biais , William Allwood , Catherine C. Deborde , Yun Xu , Mickael M. Maucourt et al.
Analytical Chemistry, 2009, 81 (8), pp.2884-2894. ⟨10.1021/ac9001996⟩
Journal articles hal-02662211v1

Proton NMR quantitative profiling for quality assessment of greenhouse-grown tomato fruit

Catherine C. Deborde , Mickael M. Maucourt , Pierre Baldet , Stéphane Bernillon , Benoit Biais et al.
Metabolomics, 2009, 5 (2), pp.183-198. ⟨10.1007/s11306-008-0134-2⟩
Journal articles hal-02664640v1

Large-scale identification of human genes implicated in epidermal barrier function.

N. Mattiuzzo , E. Toulza , Mf Galliano , N. Jonca , C. Dossat et al.
Genome Biology, 2007, 8, pp.67-74
Journal articles hal-00306571v1
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Precision requirements for space-based data

C. Miller , D. Crisp , P. Decola , S. Olsen , J. Randerson et al.
Journal of Geophysical Research: Atmospheres, 2007, 112 (D10), ⟨10.1029/2006JD007659⟩
Journal articles hal-03191467v1
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Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome

Pascal P. Sirand-Pugnet , Carole Lartigue Prat , Marc Marenda , Daniel Jacob , Aurélien Barré et al.
PLoS Genetics, 2007, 3 (5), pp.e75. ⟨10.1371/journal.pgen.0030075⟩
Journal articles hal-02663589v1

Cleaning-in-place coupled with membrane regeneration for re-using caustic soda solutions

Geneviève Gésan-Guiziou , Nicolas Alvarez , Daniel Jacob , Georges Daufin
Separation and Purification Technology, 2007, 54 (3), pp.329-339. ⟨10.1016/j.seppur.2006.10.007⟩
Journal articles hal-01453993v1

Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins

Christophe Plomion , Céline C. Lalanne , Stéphane Claverol , Hakim Meddour , Annegret Kohler et al.
Proteomics, 2006, 6 (24), pp.6509-6527. ⟨10.1002/pmic.200600362⟩
Journal articles hal-02663888v1
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Whole genome sequencing project of a dairy Propionibacterium freudenreichii subsp. shermanii genome: progress and first bioinformatic analysis

Guillaume Meurice , Daniel Jacob , Catherine Deborde , Stéphane Chaillou , Annette Rouault et al.
Le Lait, 2004, 84 (1-2), pp.15-24. ⟨10.1051/lait:2003041⟩
Journal articles hal-00895526v1

Whey drainage during soft cheeses manufacture and properties of drained curd as modified by casein concentration, whey protein to casein ratio, and pasteurisation of milk

C. Daviau , A. Pierre , M.H. Famelard , H. Goudedranche , D. Jacob et al.
Lait, 2000, 80, pp.573-587
Journal articles hal-02696518v1
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Characterisation of whey drainage kinetics during soft cheese manufacture in relation with the physicochemical and technological factors, pH at renneting, casein concentration and ionic strength of milk

Célina Daviau , Alice Pierre , Marie-Hélène Famelart , Henri Goudédranche , Daniel Jacob et al.
Le Lait, 2000, 80 (4), pp.417-432. ⟨10.1051/lait:2000135⟩
Journal articles hal-00895428v1
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Whey drainage during soft cheese manufacture and properties of drained curd as modified by casein concentration, whey protein to casein ratio, and pasteurisation of milk

Célina Daviau , Alice Pierre , Marie-Hélène Famelart , Henri Goudédranche , Daniel Jacob et al.
Lait, 2000, 80 (6), pp.573 - 587. ⟨10.1051/lait:2000145⟩
Journal articles hal-02263108v1
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Whey drainage during soft cheese manufacture and properties of drained curd as modified by casein concentration, whey protein to casein ratio, and pasteurisation of milk

Célina Daviau , Alice Pierre , Marie-Hélène Famelart , Henri Goudédranche , Daniel Jacob et al.
Le Lait, 2000, 80 (6), pp.573-587. ⟨10.1051/lait:2000145⟩
Journal articles hal-00895445v1

Characterization of whey drainage kinetics during soft cheese manufacture in relation with the physicochemical and technological factors, pH and renneting, casein concentration and ionic strength of milk

C. Daviau , A. Pierre , Marie-Hélène Famelart , H. Goudedranche , D. Jacob et al.
Lait, 2000, 80 (4), pp.417-432
Journal articles hal-02693972v1
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Residual amount of water in a draining curd of camembert cheese and physicochemical characteristics of the drained curd as modified by the pH at renneting, the casein concentration and the ionic strength of milk

Célina Daviau , Alice Pierre , Marie-Hélène Famelart , Henri Goudédranche , Daniel Jacob et al.
Le Lait, 2000, 80 (6), pp.555-571. ⟨10.1051/lait:2000103⟩
Journal articles hal-00895451v1

Residual amount of water in a draining curd of camembert cheese and physicochemical characteristics of the drained curd as modified by the pH at renneting, the casein concentration and the ionic strenght of milk

C. Daviau , A. Pierre , Marie-Hélène Famelart , H. Goudedranche , D. Jacob et al.
Lait, 2000, 80, pp.555-571
Journal articles hal-02693765v1

Mechanism of bovine trypsin inhibition by beta-casein N-terminal fragment

E. Le Guenic , Daniel Mollé , Joëlle Leonil , G. Henry , D. Jacob et al.
International Dairy Journal, 1998, 8 (5-6), pp.580
Journal articles hal-02687761v1

Combining phenotypic, metabolome and proteome data to study maize response to a mild nitrogen deficit

Maria Urrutia , Melisande Blein-Nicolas , Olivier Fernandez , Stéphane Bernillon , Mickael Maucourt et al.
Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France
Conference papers hal-03878405v1
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RMN métabolomique, aliments & nutrition : quelques exemples de la plateforme Métabolome-MetaboHUB -Bordeaux

Catherine Deborde , Blandine Madji Hounoum , Simon Roques , Daniel Jacob , Mickaël Maucourt et al.
Animation scientifique : La Résonance Magnétique Nucléaire dans tous ses états…., UR370 QuaPA et PF AgroResonance, INRAE, Jun 2021, distanciel, France
Conference papers hal-03728319v1

FAIR principles, an new opportunity to improve the data lifecycle

Daniel Jacob
ado2019 : journée thématique sur les autorités de données, Pascal Dayre - CNRS ENSEEIHT-IRIT, Apr 2019, Toulouse, France
Conference papers hal-02070883v1

NMR-based metabolomics at Bordeaux Metabolome Facility: 4 short stories

Catherine Deborde , Daniel Jacob , Simon Roques , Léa Roch , Anaïs Clave et al.
A Franco-Israeli Symposium in Magnetic Resonance, Jan 2019, Rehovot, Israel
Conference papers hal-02786826v1

An overview of NMR applications in metabolite profiling of small molecules for plant metabolism studies

Catherine Deborde , Daniel Jacob , Jean-Xavier J.-X. Fontaine , R. Molinie , Léa Roch et al.
2. International Plant Spectroscopy Conference (IPSC), Mar 2019, Berlin, Germany
Conference papers hal-02786819v1

An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolism

J.L. Chen , Bertrand Beauvoit , Sophie Colombie , Léa Roch , Coffi Belmys Cakpo et al.
Symposium on Advanced Technologies and Management for Innovative Greenhouses: GreenSys2019, Jun 2019, Angers, France. pp.401-410, ⟨10.17660/ActaHortic.2020.1296.52⟩
Conference papers hal-03125090v1
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NMR-based metabolomics workflow for quality and effect assessment of alternative plant-based diets in rainbow trout.

Catherine Deborde , Blandine Madji Hounoum , Daniel Jacob , Mickael Maucourt , Simon Roques et al.
11èmes JS du Réseau Francophone de Métabolomique et Fluxomique, May 2018, Liège, Belgium
Conference papers hal-03058513v1

Integrative and predictive biology outside the plant: linking computational tools to fleshy fruit systems

Cecile Cabasson , Sophie Colombie , Bertrand Beauvoit , Christine Nazaret , Camille Benard et al.
Colloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France
Conference papers hal-02739719v1

Leaf marker metabolites for low nitrogen stress in maize

Maria Urrutia Rosauro , Stéphane Bernillon , M. Maucourt , Catherine Deborde , Daniel Jacob et al.
Plant Biology Europe EPSO/FESPB 2016, Jun 2016, Prague, Czech Republic
Conference papers hal-01605806v1

Development of metabolomics approaches for quality assessment of plant-based diet in rainbow trout

Catherine C. Deborde , Annick Moing , Valentin Joubert , Blandine Madji Hounoum , Daniel Jacob et al.
Aquaculture Europe 2015, European Aquaculture Society (EAS). BEL., Oct 2015, Rotterdam, Netherlands
Conference papers hal-02740877v1

Development of Metabolomics Approaches for Quality Assessment of Plant-Based Diet in Rainbow Trout

Catherine Deborde , Annick Moing , Valentin Joubert , Blandine Madji Hounoum , Daniel Jacob et al.
Meeting Abstracts, 2015, Rotterdam, NLD, Unknown Region. pp.252-253
Conference papers hal-02139685v1

PeakForest: a spectral reference database made from metabolomic experts for metabolomic analyses

Nils Paulhe , Pierrick Roger , Marie-Françoise Olivier , Marie Lefebvre , Christophe Duperier et al.
9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France
Conference papers hal-02742965v1

Using developmental and diurnal compositional changes of tomato to study metabolism

Camille Bénard , Stéphane Bernillon , Benoit Biais , Sonia Osorio-Algar , Mickael M. Maucourt et al.
8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p
Conference papers hal-02793195v1

Ontology usage in Omics Standards Initiatives: Pros and Cons of enriching XML data formats with controlled vocabulary terms

Daniel Schober , Michael Wilson , Daniel Jacob , Annick Moing , Gerhard Mayer et al.
ODLS 2014 – Ontologies and Data in Life Sciences, Aug 2014, Freibourg, Germany
Conference papers hal-02797986v1

La métabolomique : un outil de la génomique fonctionnelle au service de la biologie des systèmes

Dominique D. Rolin , Bertrand Beauvoit , Stéphane Bernillon , Camille Bénard , Patricia Ballias et al.
8e Congrès Jeunes Chercheurs de la SFBV, Société Française de Biologie Végétale (SFBV). FRA., Jun 2014, Tours, France. 1 p
Conference papers hal-02801036v1
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Deciphering ascorbic acid regulation in tomato fruit ripening

Celine Bournonville , Carine Ferrand , Daniel Just , Virginie V. Garcia , Daniel Jacob et al.
18. EUCARPIA Meeting of the Tomato Working Group, Apr 2014, Avignon, France. 1 p
Conference papers hal-02800985v1

ERVA: a novel method of binning, allowing chemical information to be highlighted, from 1H-NMR metabolics data

Daniel Jacob , Catherine C. Deborde , Annick Moing
7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 1 p
Conference papers hal-02805015v1

MetaboHUB: a national infrastructure dedicated to metabolomics and fluxomics

Dominique D. Rolin , Alice A. Agasse , Justine Bertrand-Michel , R. R. Cole , B. B. Colsch et al.
7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique (RFMF), Jun 2013, Amiens, France
Conference papers hal-01002241v1

MetaboHUB: a french infrastructure dedicated to metabolomics and fluxomics

Dominique D. Rolin , Alice A. Agasse , Justine Bertrand-Michel , R. R. Cole , Sophie S. Colombie et al.
Metabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom
Conference papers hal-01002247v1

MetaboHUB: une infrastructure nationale au service de la métabolomique

Dominique D. Rolin , Alice A. Agasse , Justine Bertrand-Michel , R. R. Cole , B. B. Colsch et al.
Séance thématique "La métabolomique : son application en recherche pharmaceutique et diagnostique", Académie Nationale de Pharmacie. FRA., Feb 2013, Paris, France
Conference papers hal-01002248v1

Diurnal compositional changes of tomato fruit and leaf

Camille Benard , Stéphane Bernillon , Sonia Osorio-Algar , Mickael M. Maucourt , Benoit Biais et al.
Metabolomics 2013, Jul 2013, Glasgow, United Kingdom. 1 p
Conference papers hal-02803658v1

Standardisation et stockage des données numériques de MetaboHub dans le contexte des initiatives européennes

Daniel Jacob
1. Journée scientifique de MétaboHUB, Oct 2012, Villevave d'Ornon, France
Conference papers hal-02802257v1

Can we trust untargeted metabolomics: results of the metabo-ring study

Alexandre Verdu , Bernard Lyan , Carole Migné , Catherine Defoort , Cécile Canlet et al.
2. African-European Conference on Chemometrics - Afrodata 2012, Nov 2012, Stellenbosch, South Africa
Conference papers hal-01595486v1

Peut-on faire confiance à la métabolomique: résultats de l'initiative MetaboRing

Alexandre Verdu , Bernard Lyan , Carole Migné , Catherine Defoort , Cécile Canlet et al.
6. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique (RFMF), May 2012, Nantes, France
Conference papers hal-01594993v1

WP3 Bioinformatics Framework

Daniel Jacob
1. Journée scientifique de MétaboHUB, Oct 2012
Conference papers hal-02802614v1
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Développement d'outils informatiques pour le traitement et l'analyse des données en RMN-1H, dans un contexte d'expériences métabolomiques

Daniel Jacob , Catherine C. Deborde , Stéphane Bernillon , Annick Moing
5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France
Conference papers hal-02747402v1
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Tools and applications in plant metabolomics at Bordeaux Metabolome Fluxome Facility (PMFB; http://www.bordeaux.inra.fr/umr619/NMR.htm)

Catherine C. Deborde , Stéphane Bernillon , Mickael M. Maucourt , Cécile Cabasson , Benoit Biais et al.
5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France
Conference papers hal-02749839v1
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PROTIC workshop: A bioinformatics environment for proteom