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Improving genome-scale metabolic models of incomplete genomes with deep learning
Meine D Boer
,
Chrats Melkonian
,
Haris Zafeiropoulos
,
Andreas F Haas
,
Daniel R Garza
et al.
Article dans une revue
hal-04810527
v1
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Starvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis
Bin Liu
,
Daniel Rios Garza
,
Didier Gonze
,
Anna Krzynowek
,
Kenneth Simoens
et al.
Article dans une revue
hal-04485180
v1
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miaSim: an R/Bioconductor package to easily simulate microbial community dynamics
Yu Gao
,
Yağmur Şimşek
,
Emma Gheysen
,
Tuomas Borman
,
Yi Li
et al.
Article dans une revue
hal-04485172
v1
|
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Bacterial Oncotraits Rather than Spatial Organization Are Associated with Dysplasia in Ulcerative Colitis
Carlijn Bruggeling
,
Maarten Te Groen
,
Daniel Garza
,
Famke van Heeckeren Tot Overlaer
,
Joyce Krekels
et al.
Article dans une revue
hal-04485176
v1
|
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BCG-induced trained immunity enhances acellular pertussis vaccination responses in an explorative randomized clinical trial
Joshua Gillard
,
Bastiaan Blok
,
Daniel Garza
,
Prashanna Balaji Venkatasubramanian
,
Elles Simonetti
et al.
Article dans une revue
hal-04485146
v1
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Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
Daniel Garza
,
F. von Meijenfeldt
,
Bram van Dijk
,
Annemarie Boleij
,
Martijn Huynen
et al.
Article dans une revue
hal-04485150
v1
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A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology
Selma van Esveld
,
Lisette Meerstein-Kessel
,
Cas Boshoven
,
Jochem Baaij
,
Konstantin Barylyuk
et al.
Article dans une revue
hal-04485141
v1
|
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Optimized bacterial DNA isolation method for microbiome analysis of human tissues
Carlijn Bruggeling
,
Daniel Garza
,
Soumia Achouiti
,
Wouter Mes
,
Bas Dutilh
et al.
Article dans une revue
hal-04485137
v1
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Novel insights from the Plasmodium falciparum sporozoite-specific proteome by probabilistic integration of 26 studies
Lisette Meerstein-Kessel
,
Jeron Venhuizen
,
Daniel Garza
,
Nicholas Proellochs
,
Emma Vos
et al.
Article dans une revue
hal-04485130
v1
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Metabolic models predict bacterial passengers in colorectal cancer
Daniel Garza
,
Rahwa Taddese
,
Jakob Wirbel
,
Georg Zeller
,
Annemarie Boleij
et al.
Article dans une revue
hal-04485107
v1
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Growth rate alterations of human colorectal cancer cells by 157 gut bacteria
Rahwa Taddese
,
Daniel Garza
,
Lilian Ruiter
,
Marien de Jonge
,
Clara Belzer
et al.
Article dans une revue
hal-04485106
v1
|
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Towards predicting the environmental metabolome from metagenomics with a mechanistic model
Daniel Garza
,
Marcel van Verk
,
Martijn Huynen
,
Bas Dutilh
Article dans une revue
hal-04485093
v1
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Elucidating genomic gaps using phenotypic profiles
Daniel Cuevas
,
Daniel Garza
,
Savannah Sanchez
,
Jason Rostron
,
Chris Henry
et al.
Article dans une revue
hal-04485099
v1
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From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems
Daniel Garza
,
Bas Dutilh
Article dans une revue
hal-04485087
v1
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Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions
Bas Dutilh
,
Cristiane Thompson
,
Ana Cp Vicente
,
Michel Marin
,
Clarence Lee
et al.
Article dans une revue
hal-04485079
v1
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Population and Genetic Study of Vibrio cholerae from the Amazon Environment Confirms that the WASA-1 Prophage Is the Main Marker of the Epidemic Strain that Circulated in the Region
Lena Líllian Canto de Sá Morais
,
Daniel Rios Garza
,
Edvaldo Carlos Brito Loureiro
,
Elivam Rodrigues Vale
,
Denise Suéllem Amorim de Sousa Santos
et al.
Article dans une revue
hal-04485064
v1
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Genome-Wide Study of the Defective Sucrose Fermenter Strain of Vibrio cholerae from the Latin American Cholera Epidemic
Daniel Rios Garza
,
Cristiane Thompson
,
Edvaldo Carlos Brito Loureiro
,
Bas Dutilh
,
Davi Toshio Inada
et al.
Article dans une revue
hal-04485053
v1
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