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David Auber

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Publications

State of the Art of Visual Analytics for eXplainable Deep Learning

B. La Rosa , G. Blasilli , R. Bourqui , D. Auber , G. Santucci
Computer Graphics Forum, inPress, ⟨10.1111/cgf.14733⟩
Journal articles hal-03980917v1

NetPrune: A sparklines visualization for network pruning

Luc-Etienne Pommé , Romain Bourqui , Romain Giot , Jason Vallet , David Auber
Visual Informatics, 2023, ⟨10.1016/j.visinf.2023.04.001⟩
Journal articles hal-04115344v1
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Toward Efficient Deep Learning for Graph Drawing (DL4GD)

Loann Giovannangeli , Frederic Lalanne , David Auber , Romain Giot , Romain Bourqui
IEEE Transactions on Visualization and Computer Graphics, 2022, pp.1-16. ⟨10.1109/TVCG.2022.3222186⟩
Journal articles hal-03901281v1
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Color and Shape efficiency for outlier detection from automated to user evaluation

Loann Giovannangeli , Romain Bourqui , Romain Giot , David Auber
Visual Informatics, 2022, ⟨10.1016/j.visinf.2022.03.001⟩
Journal articles hal-03617222v1

Toward automatic comparison of visualization techniques: Application to graph visualization

Loann Giovannangeli , Romain Bourqui , Romain Giot , David Auber
Visual Informatics, 2020, 4 (2), pp.86-98. ⟨10.1016/j.visinf.2020.04.002⟩
Journal articles hal-02899895v1
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HiePaCo: Scalable hierarchical exploration in abstract parallel coordinates under budget constraints

Gaëlle Richer , Joris Sansen , Frédéric Lalanne , David Auber , Romain Bourqui
Big Data Research, inPress
Journal articles hal-02173027v1

Visualizing omics and clinical data: which challenges for dealing with their variety?

Fleur Mougin , David Auber , Romain Bourqui , Gayo Diallo , Isabelle Dutour
Methods, 2018, 132, pp.3-18. ⟨10.1016/j.ymeth.2017.08.012⟩
Journal articles hal-03160796v2
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Cornac: Tackling Huge Graph Visualization with Big Data Infrastructure

Alexandre Perrot , David Auber
IEEE Transactions on Big Data, 2018, 14, pp.1 - 1. ⟨10.1109/tbdata.2018.2869165⟩
Journal articles hal-01872712v1
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Rook-drawings of Plane Graphs

David Auber , Nicolas Bonichon , Paul Dorbec , Claire Pennarun
Journal of Graph Algorithms and Applications, 2017, 21 (1), pp.103-120
Journal articles hal-01431637v1

Visual Exploration of Large Multidimensional Data Using Parallel Coordinates on Big Data Infrastructure

Joris Sansen , Gaëlle Richer , Timothée Jourde , Frédéric Lalanne , David Auber
Informatics, 2017, 4 (3), ⟨10.3390/informatics4030021⟩
Journal articles hal-01610951v1
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IndexMEED cases studies using "Omics" data with graph theory

Romain David , Jean-Pierre Féral , Sophie Archambeau , Fanny Arnaud , David Auber
Biodiversity Information Science and Standards, 2017, TDWG 2017 - Proceedings, 1 (2), pp.340-361. ⟨10.3897/tdwgproceedings.1.20740⟩
Journal articles hal-01761535v1
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GosperMap: Using a Gosper Curve for Laying out Hierarchical Data

David Auber , Charles Huet , Antoine Lambert , Benjamin Renoust , Arnaud Sallaberry
IEEE Transactions on Visualization and Computer Graphics, 2013, 19 (11), pp.1820-1832. ⟨10.1109/TVCG.2013.91⟩
Journal articles hal-00959383v1
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ImPrEd: An Improved Force-Directed Algorithm that Prevents Nodes from Crossing Edges

Paolo Simonetto , Daniel Archambault , David Auber , Romain Bourqui
Computer Graphics Forum, 2011, IEEE Symposium on visualization 2011 (EuroVis 2011), 30 (3)
Journal articles inria-00605921v1
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Winding Roads: Routing edges into bundles

Antoine Lambert , Romain Bourqui , David Auber
Computer Graphics Forum, 2010, 29 (3), pp.853-862
Journal articles hal-00495279v1
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Tugging Graphs Faster: Efficiently Modifying Path-Preserving Hierarchies for Browsing Paths

Daniel Archambault , Tamara Munzner , David Auber
IEEE Transactions on Visualization and Computer Graphics, 2010
Journal articles inria-00413861v1
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Fully Automatic Visualisation of Overlapping Sets

Paolo Simonetto , David Auber , Daniel Archambault
Computer Graphics Forum, 2009, 28 (3), pp.967-974
Journal articles hal-00407269v1
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Code Flows: Visualizing Structural Evolution of Source Code

Alexandru C Telea , David Auber
Computer Graphics Forum, 2008, pp.831-938
Journal articles inria-00338601v1
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GrouseFlocks: Steerable Exploration of Graph Hierarchy Space

Daniel Archambault , Tamara Munzner , David Auber
IEEE Transactions on Visualization and Computer Graphics, 2008, 14 (4), pp.900--913
Journal articles inria-00338627v1
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Metabolic network visualization eliminating node redundance and preserving metabolic pathways

Romain Bourqui , L. Cottret , Vincent Lacroix , D. Auber , P. Mary
BMC Biology, 2007, 1 - n°29, pp.1-19. ⟨10.1186/1752-0509-1-29⟩
Journal articles hal-00434765v1

TopoLayout: Multi-Level Graph Layout by Topological Features

Daniel Archambault , Tamara Munzner , David Auber
IEEE Transactions on Visualization and Computer Graphics, 2007, 13, pp.305--317
Journal articles hal-00306601v1

Efficient drawing and comparison of RNA secondary structure

David Auber , Maylis Delest , Serge Dulucq , Jean-Philippe Domenger
Journal of Graph Algorithms and Applications, 2006, 10, pp.329-351
Journal articles hal-00307625v1

Metabolic network visualization using constraint planar graph drawing algorithm

Romain Bourqui , D. Auber , Vincent Lacroix , F. Jourdan
incollection, 2006, --, pp.489-496
Journal articles hal-00427907v1

Smashing Peacocks Further: Drawing Quasi-Trees from Biconnected components

Daniel Archambault , Tamara Munzner , David Auber
IEEE Transactions on Visualization and Computer Graphics, 2006, 12, pp.813--820
Journal articles hal-00306602v1

Mise en place dun mécanisme de plugins en C++

David Auber , Patrick Mary
Programmation sous Linux, 2006, pp.74-79
Journal articles hal-00306690v1

ProViz: protein interaction visualization and exploration

Florian Iragne , Macha Nikolski , Bertrand Mathieu , David Auber , David James Sherman
Bioinformatics, 2005, 21 (2), pp.272-274. ⟨10.1093/bioinformatics/bth494⟩
Journal articles inria-00202436v1

A clustering algorithm for huge trees

David Auber , Maylis Delest
Advances in Applied Mathematics, 2003, 31, pp.46-60
Journal articles hal-00307632v1
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VRGrid: Efficient Transformation of 2D Data into Pixel Grid Layout

Adrien Halnaut , Romain Giot , Romain Bourqui , David Auber
26th International Conference Information Visualisation, Jul 2022, Vienna, Austria. pp.11-20
Conference papers hal-03700588v1

Zsouav: The social open UAV to support information collection and collaboration in risky situations

Serge Chaumette , David Auber
12th International Conference on Applied Human Factors and Ergonomics (AHFE 2021), Jul 2021, Virtual Conférence, United States
Conference papers hal-03625675v1
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Samples Classification Analysis Across DNN Layers with Fractal Curves

Adrien Halnaut , Romain Giot , Romain Bourqui , D. Auber
ICPR 2020's Workshop Explainable Deep Learning for AI, Jan 2021, Milano (virtual), Italy
Conference papers hal-03111634v1
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Deep Dive into Deep Neural Networks with Flows

Adrien Halnaut , Romain Giot , Romain Bourqui , David Auber
Proceedings of the 15th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISIGRAPP 2020): IVAPP, Feb 2020, Valletta, Malta. pp.231-239
Conference papers hal-02492393v1
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Big Data Visualization and Analytics: Future Research Challenges and Emerging Applications

Gennady Andrienko , Natalia Andrienko , Steven M. Drucker , Jean-Daniel Fekete , Danyel Fisher
BigVis 2020: Big Data Visual Exploration and Analytics, Mar 2020, Copenhagen, Denmark
Conference papers hal-02568845v1
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CorFish: Coordinating Emphasis across Multiple Views using Spatial Distortion

Gaëlle Richer , Romain Bourqui , David Auber
12th IEEE Pacific Visualization Symposium (PacificVis 2019), Apr 2019, Bangkok, Thailand
Conference papers hal-02103783v1
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Enabling Hierarchical Exploration for Large-Scale Multidimensional Data with Abstract Parallel Coordinates

Gaëlle Richer , Joris Sansen , Frédéric Lalanne , David Auber , Romain Bourqui
International Workshop on Big Data Visual Exploration and Analytics 2018, Mar 2018, Vienna, Austria. pp.76-83
Conference papers hal-01700775v2
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Data-Oriented Algorithm for Real-Time Estimation of Flow Rates and Flow Directions in a Water Distribution Network

Christophe Dumora , David Auber , Jérémie Bigot , Vincent Couallier , Cyril Leclerc
Multi Conference on Computer Science and Information Systems, Jul 2018, Madrid, Spain. pp.273
Conference papers hal-01847858v1
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HeatPipe: High Throughput, Low Latency Big Data Heatmap with Spark Streaming

Alexandre Perrot , Romain Bourqui , Nicolas Hanusse , David Auber
IV2017 - 21st International Conference on Information Visualisation, Jul 2017, Londres, United Kingdom
Conference papers hal-01516888v1
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MuGDAD: Multilevel graph drawing algorithm in a distributed architecture

Antoine Hinge , Gaëlle Richer , David Auber
Conference on Computer Graphics, Visualization and Computer Vision, IADIS, Jul 2017, Lisbon, Portugal. pp.189
Conference papers hal-01516889v1
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Rook-drawing for plane graphs

David Auber , Nicolas Bonichon , Paul Dorbec , Claire Pennarun
23rd International Symposium on Graph Drawing and Network Visualization, Sep 2015, Los Angeles, United States
Conference papers hal-01207960v1
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Adjasankey: Visualization of huge hierarchical weighted and directed graphs

Joris Sansen , Frédéric Lalanne , David Auber , Romain Bourqui
Conference on Information Visualisation (IV'15), Jul 2015, barcelone, Spain. pp.211 - 216, ⟨10.1109/iV.2015.46⟩
Conference papers hal-01189106v1
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FATuM -Fast Animated Transitions using Multi-Buffers

Alexandre Perrot , David Auber
19th International Conference “Information Visualisation 2015”, Jul 2015, Barcelone, Spain
Conference papers hal-01174117v1
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Distributed Graph Layout with Spark

Antoine Hinge , David Auber
Information Visualisation (iV), 2015 19th International Conference on, Jul 2015, Barcelone, Spain. pp.271--276
Conference papers hal-01187421v1
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Large Interactive Visualization of Density Functions on Big Data Infrastructure

Alexandre Perrot , Romain Bourqui , Nicolas Hanusse , Frédéric Lalanne , David Auber
5th IEEE Symposium on Large Data Analysis and Visualization, IEEE, Oct 2015, Chicago, United States
Conference papers hal-01188721v1
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Visualization of time-series data in the context of metabolic networks with Systrip Software

Jonathan Dubois , Ludovic Cottret , Amine Ghozlane , David Auber , Frédéric Bringaud
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France
Conference papers hal-00838725v1
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Graph analysis and visualization with Tulip-Python

Antoine Lambert , David Auber
EuroSciPy 2012 - 5th European meeting on Python in Science, Aug 2012, Bruxelles, Belgium
Conference papers hal-00744969v1
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks

Jonathan Dubois , Ludovic Cottret , Amine Ghozlane , David Auber , Frédéric Bringaud
16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204
Conference papers hal-00742176v1

Import automatique et interactif de données dans les systèmes de visualisations

Frédéric Gilbert , David Auber
EGC 2011 - 11ème Conférence Internationale Francophone sur l'Extraction et la Gestion des Connaissances, Jan 2011, Brest, France
Conference papers hal-00545793v1

Tulip: a Scalable Graph Visualization Framework

David Auber , Patrick Mary , Morgan Mathiaut , Jonathan Dubois , Antoine Lambert
Extraction et Gestion des Connaissances (EGC) 2010, Jan 2010, Hammamet, Tunisia. pp.623-624
Conference papers inria-00482563v1
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From Databases to Graph Visualization

Frédéric Gilbert , David Auber
2010 14th International Conference Information Visualisation, Jul 2010, London, United Kingdom. pp.128
Conference papers hal-00520906v1
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Living flows: enhanced exploration of edge-bundled graphs based on GPU-intensive edge rendering

Antoine Lambert , David Auber , Guy Melançon
IV 2010 - 14th International Conference on Information Visualization, Jul 2010, London, United Kingdom. pp.523-530
Conference papers hal-00495293v1
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3D Edge Bundling for Geographical Data Visualization

Antoine Lambert , Romain Bourqui , David Auber
IV 2010 - 14th International Conference on Information Visualization, Jul 2010, London, United Kingdom. pp.329-335
Conference papers hal-00495307v1
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An Heuristic for the Construction of Intersection Graphs

Paolo Simonetto , David Auber
13th International Conference on Information Visualisation (IV09), Jul 2009, Barcelona, Spain. pp.673-678
Conference papers hal-00407218v1
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Large Quasi-Tree Drawing: A Neighborhood Based Approach

Romain Bourqui , David Auber
13th International Conference on Information Visualisation, Jul 2009, Spain. pp.653-660
Conference papers hal-00406435v1
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TugGraph: Path-Preserving Hierarchies for Browsing Proximity and Paths in Graphs

Daniel Archambault , Tamara Munzner , David Auber
IEEE Pacific Visualization Symposium, Apr 2009, Pekin, China. pp.113--121
Conference papers inria-00413858v1
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Visualise Undrawable Euler Diagrams

Paolo Simonetto , David Auber
12th International Conference on Information Visualisation, Jul 2008, London, United Kingdom. pp.594-599, ⟨10.1109/IV.2008.78⟩
Conference papers hal-00319119v2

Visually Mining the Data Cube Using a Pixel-Oriented Technique

David Auber , Noël Novelli , Guy Melançon
11th International Conference on Information Visualisation, IV 2007, 2007, Sweden. pp.3--10
Conference papers hal-00306688v1
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Structural Analysis and Visualization of C++ Code Evolution using Syntax Trees

Fanny Chevalier , David Auber , Alexandru C Telea
International Workshop on Principles of Software Evolution (IWPSE), 2007, United States. pp.90 - 97
Conference papers hal-00306679v1

Calcul et représentation efficace de cubes de données pour une visualisation orientée pixel.

Noël Novelli , David Auber
EGC 2007, 2007, Belgique. pp.205--206
Conference papers hal-00306563v1

How to Draw ClusteredWeighted Graphs using a Multilevel Force-Directed Graph Drawing Algorithm

Romain Bourqui , David Auber , Patrick Mary
11th International Conference on Information Visualisation, IV 2007, Jul 2007, Sweden. pp.757-764
Conference papers hal-00306672v1
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Visualisation de graphes avec Tulip : exploration interactive de grandes masses de données en appui à la fouille de données et à l'extraction de connaissances

David Auber , Yves Chiricota , Maylis Delest , Guy Melançon , Jean-Philippe Domenger
EGC: Extraction et Gestion des Connaissances, Jan 2007, Namur, Belgique. pp.147-156
Conference papers lirmm-00203728v1

Grouse: Feature-Based, Steerable Graph Hierarchy Exploration

Daniel Archambault , Tamara Munzner , David Auber
EuroVis07: Joint Eurographics - IEEE VGTC Symposium on Visualization, 2007, Sweden. pp.67--74
Conference papers hal-00306603v1
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Visually Mining the Datacube using a Pixel-Oriented Technique

David Auber , Noël Novelli , Guy Melançon
IV'07: 11th International Conference on Information Visualisation, Jul 2007, londres, France
Conference papers lirmm-00153855v1

Improved Efficiency of Spring Embedders: Taking Advantage of GPU Programming

David Auber , Yves Chriricota
Visualization, Imaging, and Image Processing - 2007, 2007, Spain. pp.169--175
Conference papers hal-00306689v1

Improved efficiency of spring embedders: taking advantage of GPU programming

David Auber , Yves Chiricota
7th IASTED International Conference on Visualization, Imaging and Image Processing, Aug 2007, Palma de Mallorca, Spain. pp.169-175
Conference papers inria-00614161v1

Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux Métaboliques

Romain Bourqui , David Auber , Vincent Lacroix , Fabien Jourdan
Quatrième édition du congrés francophone de doctorants en STIC, MajecSTIC, 2006, France. pp.électronique
Conference papers hal-00306673v1

Navrna: Visualization - exploration - editing of rna.

David Auber , Laurence Nigay , Gilles Bailly
AVI 06: Proceedings of the International Conference on Advanced Visual Interfaces, 2006, Italy. pp.504--507
Conference papers hal-00307004v1

Metabolic network visualization using constraint planar graph drawing Algorithm

Romain Bourqui , David Auber , Vincent Lacroix , Fabien Jourdan
IV 06: Proceedings of the 10 International Conference on Information Visualisation (IV06), 2006, United States. pp.489 - 496
Conference papers hal-00306676v1

From Visualization to Manipulation of RNA Secondary and Tertiary Structures

Gilles Bailly , David Auber , Laurence Nigay
10th International Conference on Information Visualisation, (IV06), 2006, United Kingdom. pp.107--116
Conference papers hal-00307006v1

2M: un espace de conception pour linteraction bi-manuelle

Gilles Bailly , Laurence Nigay , David Auber
UbiMob 05: Proceedings of the 2nd French-speaking conference on Mobility and ubiquity computing, 2005, United States. pp.177--184
Conference papers hal-00307005v1

Interactive Refinement of Multi-scale Network Clusterings

David Auber , F. Jourdan
9th International Conference on Information Visualisation, IV, 2005, United Kingdom. pp.703 - 709
Conference papers hal-00307633v1

Strahler based Graph Clustering using Convolution

David Auber , Maylis Delest , Y. Chiricota
8th International Conference on Information Visualisation, IV, 2004, United Kingdom. pp.44-51
Conference papers hal-00307627v1

Exploring InfoVis Publication History with Tulip

Maylis Delest , T. Munzner , David Auber , Jean-Philippe Domenger
InfoVis 2004, 2004, United States. pp.216.10
Conference papers hal-00307552v1

Arna: Interactive comparison and alignment of RNA secondary structure

G. Gainant , David Auber
IEEE Symposition on Information Visualisation, 2004, Italy
Conference papers hal-00307392v1

New Strahler numbers for rooted plane trees

David Auber , Maylis Delest , Jean-Philippe Domenger , Philippe Duchon , Jean-Marc Fédou
Third Colloquium on Mathematics and Computer Science Algorithms, 2004, Austria. pp.203--215
Conference papers hal-00306685v1
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Bubble Tree Drawing Algorithm

Sébastien Grivet , David Auber , Jean-Philippe Domenger , Guy Melançon
ICCVG: International Conference on Computer Vision Graphics, Sep 2004, Warsaw, Poland. pp.633-641, ⟨10.1007/1-4020-4179-9_91⟩
Conference papers lirmm-00108872v1

Bubble Tree Drawing Algorithm

S. Grivet , David Auber , Jean-Philippe Domenger , Guy Melançon
International Conference on Computer Vision and Graphics, 2004, Portugal. pp.633-641
Conference papers hal-00308258v1

Exploring InfoVis Publication History with Tulip

Maylis Delest , Tamara Munzner , David Auber , Jean-Philippe Domenger
InfoVis 2004,, 2004, United States. pp.2nd Award
Conference papers hal-00306642v1

New {S}trahler Numbers for Rooted Plane Trees

David Auber , Maylis Delest , J.M. Fedou , Jean-Philippe Domenger , Philippe Duchon
Proceedings of the Third Colloquium on Mathematics and Computer Science, 2004, Austria. pp.203--215
Conference papers hal-00307624v1

Bubble Tree Drawing Algorithm

S. Grivet , David Auber , Jean-Philippe Domenger , Guy Melançon
International Conference on Computer Vision and Graphics, 2004, Poland
Conference papers hal-00307369v1

Strahler based graph clustering using convolution,

David Auber , Yves Chriricota , Maylis Delest
8th International Conference Information Visualisation, 2004, United Kingdom. pp.44--52
Conference papers hal-00306693v1

New Strahler numbers for rooted plane trees

David Auber , Maylis Delest , J.M. Fédou , Jean-Philippe Domenger
Third Colloquium on Mathematics and Computer Science Algorithms,Trees, Combinatorics and Probabilities, 2004, Austria. pp.203-216
Conference papers hal-00308269v1

Multiscale Visualization of Small World Networks

David Auber , Y. Chiricota , F. Jourdan , Guy Melançon
IEEE Symposition on Information Visualisation, 2003, United States. pp.75-81
Conference papers hal-00307629v1
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Multiscale Visualization of Small World Networks

David Auber , Yves Chiricota , Fabien Jourdan , Guy Melançon
InfoVis: Information Visualization, Oct 2003, Seattle, WA, United States. pp.75-81
Conference papers lirmm-00269770v1

EVAT: Environment for Visualization and Analysis of Trees

David Auber , Maylis Delest , Jean-Philippe Domenger , Pascal Ferraro , Robert Strandh
Proceedings of the IEEE Symposium on Information Visualization, Oct 2003, United States. pp.124-125
Conference papers hal-00308270v1

Using Strahler numbers for real time visual exploration of huge graphs

David Auber
International Conference on Computer Vision and Graphics, 2002, Czech Republic. pp.56-69
Conference papers hal-00307631v1
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TULIP 5

David Auber , Daniel Archambault , Romain Bourqui , Maylis Delest , Jonathan Dubois
Reda Alhajj; Jon Rokne. Encyclopedia of Social Network Analysis and Mining, Springer, pp.1-28, 2017, 978-1-4614-7163-9. ⟨10.1007/978-1-4614-7163-9_315-1⟩
Book sections hal-01654518v1

Visualisation de données massives

David Auber , Michel Beaudouin-Lafon
MOKRANE BOUZEGHOUB ; RÉMY MOSSERI Les Big Data à découvert, CNRS {\'E}DITIIONS, 2017, 978-2-271-11464-8
Book sections hal-01515255v1

Tulip III

David Auber , Daniel Archambault , Romain Bourqui , Maylis Delest , Jonathan Dubois
Encyclopedia of Social Network Analysis and Mining, 2014, 978-1-4614-6169-2. ⟨10.1007/978-1-4614-6170-8_315⟩
Book sections hal-01096759v1

Graph Visualization for Geography

Antoine Lambert , Romain Bourqui , David Auber
Methods for Multilevel Analysis and Visualisation of Geographical Networks, Springer, pp.81-102, 2013
Book sections hal-00841188v1

Comparing Multilevel Clustering Methods on Weighted Graphs: The Case of Worldwide Air Passenger Traffic 2000-2004

Céline Rozenblat , Guy Melançon , Romain Bourqui , David Auber
Methods for Multilevel Analysis and Visualisation of Geographical Networks, Springer, pp.141-154, 2013
Book sections hal-00841187v1

Mining Networks through Visual Analytics: Incremental Hypothesis Building and Validation

David Auber , Guy Melançon , Romain Bourqui
Clive Best, Françoise Fogelman Soulié. Mining Massive Data Sets for Security, IOS Press, pp.204-211, 2008, NATO Advanced Study Institute, 978-1-58603-898-4
Book sections lirmm-00272781v1

Worldwide Multi-Level Networks of Cities Emerging From Air Traffic (2000)

Céline Rozenblat , G. Melançon , D. Auber , C. Discazeaux , Alain L'Hostis
Rubén C. Lois González. Urban changes in differents scales. Systems and structures, University of Santiago de Compostela, Publications Service, pp.n.c., 2006
Book sections hal-03055285v1

Tulip : A huge graph visualisation framework

David Auber
Petra Mutzel and Michael Junger. Graph Drawing Software, Springer Berlin Heidelberg, pp.105-126, 2004, Mathematics and Visualization, 978-3-642-18638-7. ⟨10.1007/978-3-642-18638-7_5⟩
Book sections hal-00307626v1