Delphine LALLIAS

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Publications

Image document

Screening for links between behaviour and acute hyperthermia and hypoxia resistance in rainbow trout using isogenic lines

Henri Lagarde , Delphine Lallias , Florence Phocas , Lionel Goardon , Marjorie Bideau et al.
Peer Community Journal, 2025, 5, pp.e46. ⟨10.24072/pcjournal.555⟩
Article dans une revue hal-05057569 v1

Strengths and limitations of reduced representation bisulfite sequencing (RRBS) in the perspective of DNA methylation analysis in fish: a case-study on rainbow trout spermatozoa

Marina El Kamouh , Aurélien Brionne , Amin Sayyari , Delphine Lallias , Catherine Labbé et al.
Fish Physiology and Biochemistry, 2024, ⟨10.1007/s10695-024-01326-5⟩
Article dans une revue hal-04548356 v1
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Isogenic lines of rainbow trout (Oncorhynchus mykiss) as a tool to assess how growth and feeding behaviour are correlated to feed efficiency in fish

Simon Pouil , Thierry Kerneis , Edwige Quillet , Laurent Labbé , Delphine Lallias et al.
Aquaculture, 2023, 577, pp.739904. ⟨10.1016/j.aquaculture.2023.739904⟩
Article dans une revue hal-04172992 v1
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Are resistances to acute hyperthermia or hypoxia stress similar and consistent between early and late ages in rainbow trout using isogenic lines?

H. Lagarde , Florence Phocas , Simon Pouil , Lionel Goardon , M. Bideau et al.
Aquaculture, 2023, 562, pp.738800. ⟨10.1016/j.aquaculture.2022.738800⟩
Article dans une revue hal-03778854 v1
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Genome-wide association study and genomic prediction of tolerance to acute hypoxia in rainbow trout

M Prchal , Jonathan D’ambrosio , Henri Lagarde , Delphine Lallias , P Patrice et al.
Aquaculture, 2022, 565, pp.739068. ⟨10.1016/j.aquaculture.2022.739068⟩
Article dans une revue hal-03944462 v1
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Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background

Delphine Lallias , Maria Bernard , Céline Ciobotaru , Nicolas Dechamp , Laurent Labbé et al.
Article dans une revue hal-03003559 v1
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Combining Multiple Approaches and Models to Dissect the Genetic Architecture of Resistance to Infections in Fish

Clémence Fraslin , Edwige Quillet , Tatiana Rochat , Nicolas Dechamp , Jean François Bernardet et al.
Frontiers in Genetics, 2020, 11, ⟨10.3389/fgene.2020.00677⟩
Article dans une revue hal-02927380 v1
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Standardized IMGT® Nomenclature of Salmonidae IGH Genes, the Paradigm of Atlantic Salmon and Rainbow Trout: From Genomics to Repertoires

Susana Magadan , Aleksei Krasnov , Saida Hadi-Saljoqi , Sergey Afanasyev , Stanislas Mondot et al.
Frontiers in Immunology, 2019, 10, ⟨10.3389/fimmu.2019.02541⟩
Article dans une revue hal-02867815 v1
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Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

Paul B. L. George , Delphine Lallias , Simon Creer , Fiona M. Seaton , John G. Kenny et al.
Nature Communications, 2019, 10, ⟨10.1038/s41467-019-09031-1⟩
Article dans une revue hal-02622552 v1
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Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing

Francisco J. A. Nascimento , Delphine Lallias , Holly M. Bik , Simon Creer
Scientific Reports, 2018, 8, pp.1-12. ⟨10.1038/s41598-018-30179-1⟩
Article dans une revue hal-02623380 v1
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Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

Iliana Bista , Gary R. Carvalho , Kerry Walsh , Mathew Seymour , Mehrdad Hajibabaei et al.
Nature Communications, 2017, 8, pp.1-11. ⟨10.1038/ncomms14087⟩
Article dans une revue hal-01607796 v1
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Genetic variability of environmental sensitivity revealed by phenotypic variation in body weight and (its) correlations to physiological and behavioral traits

Delphine Lallias , Edwige Quillet , Marie-Laure Bégout , Benoît Aupérin , Hooi Ling Khaw et al.
PLoS ONE, 2017, 12 (12), pp.1-19. ⟨10.1371/journal.pone.0189943⟩
Article dans une revue hal-01674985 v1
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New insights about the introduction of the Portuguese oyster, Crassostrea angulata, into the North East Atlantic from Asia based on a highly polymorphic mitochondrial region

Deborah M. Power , Jonathan W. King , Frederico M. Batista , Ana Grade , Hicham Chairi et al.
Aquatic Living Resources, 2016, 29 (4), pp.404. ⟨10.1051/alr/2016035⟩
Article dans une revue hal-01483208 v1
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Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems

Delphine Lallias , Jan G. Hiddink , Vera G. Fonseca , John M. Gaspar , Way Sung et al.
The International Society of Microbiologial Ecology Journal, 2015, 9 (5), pp.1208-1221. ⟨10.1038/ismej.2014.213⟩
Article dans une revue hal-02632597 v1

Invasion genetics of the Pacific oyster Crassostrea gigas in the British Isles inferred from microsatellite and mitochondrial markers

Delphine Lallias , Pierre Boudry , Frederico M. Batista , Andy Beaumont , Jonathan W. King et al.
Biological Invasions, 2015, 17 (9), pp.2581 - 2595. ⟨10.1007/s10530-015-0896-1⟩
Article dans une revue hal-01535289 v1

Convergence of multiple markers and analysis methods defines the genetic distinctiveness of cryptic pitvipers

- Mrinalini , Roger S. Thorpe , Simon Creer , Delphine Lallias , Louise Dawnay et al.
Molecular Phylogenetics and Evolution, 2015, 92, pp.266-279. ⟨10.1016/j.ympev.2015.06.001⟩
Article dans une revue hal-02636436 v1
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Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses

V. G. Fonseca , B. Nichols , Delphine Lallias , C. Quince , G. R. Carvalho et al.
Nucleic Acids Research, 2012, 40 (9), pp.1-9. ⟨10.1093/nar/gks002⟩
Article dans une revue hal-02647717 v1
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Identification of marine fish egg predators using molecular probes

Clive J. Fox , Martin I. Taylor , Jeroen van Der Kooij , Natasha Taylor , Stephen P. Milligan et al.
Marine Ecology Progress Series, 2012, 462, pp.205-218. ⟨10.3354/meps09748⟩
Article dans une revue hal-02647296 v1

Relative quantification of the M and F mitochondrial DNA types in the blue mussel Mytilus edulis by real-time PCR

Federico M. Batista , Delphine Lallias , Nicolas Taris , Henrique Guedes-Pinto , Andy R. Beaumont
Journal of Molluscan Studies, 2011, 77 (1), pp.24-29. ⟨10.1093/mollus/eyq031⟩
Article dans une revue hal-01218839 v1

Strategies for the retention of high genetic variability in European flat oyster (<em>Ostrea edulis</em>) restoration programmes

Delphine Lallias , Pierre Boudry , Sylvie Lapègue , Jon W. King , Andy R. Beaumont
Conservation Genetics, 2010, 11 (5), pp.1899-1910. ⟨10.1007/s10592-010-0081-0⟩
Article dans une revue hal-02668522 v1

Variance in the reproductive success of flat oyster<em> Ostrea edulis</em> L. assessed by parentage analyses in natural and experimental conditions

Delphine Lallias , Nicolas Taris , P. Boudry , F. Bonhomme , Sylvie Lapegue
Genetics Research, 2010, 92 (3), pp.175-187. ⟨10.1017/S0016672310000248⟩
Article dans une revue hal-02667005 v1

Characterization of ten microsatellite loci in the blue mussel <em>Mytilus edulis</em>

Delphine Lallias , Ruth Stockdale , Pierre Boudry , Sylvie Lapegue , Andy R. Beaumont
Journal of Shellfish Research, 2009, 28 (3), pp.547-551. ⟨10.2983/035.028.0317⟩
Article dans une revue hal-02662402 v1
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Characterization of 27 microsatellite loci in the European flat oyster <em>Ostrea edulis</em>

Delphine Lallias , Ruth Stockdale , Pierre Boudry , Andy R. Beaumont , Sylvie Lapegue
Molecular Ecology Resources, 2009, 9 (3), pp.960-963. ⟨10.1111/j.1755-0998.2009.02515.x⟩
Article dans une revue hal-02664373 v1

Combining two-stage testing and interval mapping strategies to detect QTL for resistance to Bonamiosis in the European flat oyster <em>Ostrea edulis</em>

Delphine Lallias , L. Gomez-Raya , C.S. Haley , I. Arzul , S. Heurtebise et al.
Marine Biotechnology, 2009, 11 (5), pp.570-584. ⟨10.1007/s10126-008-9173-y⟩
Article dans une revue hal-02657151 v1
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<em>Bonamia ostreae</em>-induced mortalities in one-year old European flat oysters <em>Ostrea edulis</em>: experimental infection by cohabitation challenge

Delphine Lallias , Isabelle Arzul , Serge Heurtebise , Sylvie Ferrand , Bruno Chollet et al.
Aquatic Living Resources, 2008, 21 (4), pp.423-439. ⟨10.1051/alr:2008053⟩
Article dans une revue hal-02658197 v1
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AFLP-based genetic linkage maps of the blue mussel (<em>Mytilus edulis</em>)

Delphine Lallias , S. Lapegue , C. Hecquet , P. Boudry , A.R. Beaumont
Animal Genetics, 2007, 38 (4), pp.340-349. ⟨10.1111/j.1365-2052.2007.01611.x⟩
Article dans une revue hal-02660403 v1

Links between gills genes expressions during moderate heat stress and resistance to acute hyperthermia using rainbow trout isogenic lines

Henri Lagarde , Delphine Lallias , Mickaël Marchand , Florence Phocas , Lionel Goardon et al.
EAAP, Aug 2024, Florence, Italy
Communication dans un congrès hal-04698564 v1

Impact de la durée de mise au froid des œillés de truite arc-en-ciel

Delphine Lallias , E. Harté , Mickaël Marchand , Simon Pouil , Tina Terrenne et al.
8èmes Journées de la Recherche Piscicole, Jul 2024, Rennes, France
Communication dans un congrès hal-04722110 v1

Mise au point d'un test in vitro de résistance à la température chez la truite arc-en-ciel

Michaël Marchand , Delphine Lallias , Mathilde Dupont-Nivet , Simon Pouil , Henri Lagarde et al.
8èmes Journées de la Recherche Piscicole 2024, Jul 2024, Rennes, France
Communication dans un congrès hal-04736826 v1
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Quantitative trait loci for resistance to Flavobacterium psychrophilum identified using high-density genotyping in rainbow trout French selected lines

Simon Pouil , Dimitri Rigaudeau , Tatiana Rochat , Bo-Hyung Lee , Emilien Segret et al.
Aquaculture Europe, Sep 2023, Vienna, Austria
Communication dans un congrès hal-04745285 v1
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IMPACT OF EARLY COLD TEMPERATURE ON GENOMEWIDE DNA METHYLATION PATTERNS IN JUVENILE RAINBOW TROUT DIVERGENT LINES FOR MUSCLE FAT CONTENT

Delphine Lallias , Elodie Harté , Michaël Marchand , Aurélie Chaulot-Talmon , Anne Frambourg et al.
Aquaculture Europe, European Aquaculture Society (EAS), Sep 2023, Vienna, Austria. ⟨10.15454/1.5572329612068406E12⟩
Communication dans un congrès hal-04256745 v1
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Relationship between behaviour traits and resistances to acute hyperthermia and hypoxia in rainbow trout

Henri Lagarde , Delphine Lallias , Florence Phocas , Lionel Goardon , M Bideau et al.
European Aquaculture Society, European Aquaculture Society, Sep 2023, Vienne (Autriche), France
Communication dans un congrès hal-04449088 v1
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Impact of early cold temperature on response to acute confinement and temperature challenges in juvenile Rainbow trout divergent lines for muscle fat content

Simon Pouil , Elodie Harté , Michaël Marchand , Lionel Goardon , Laurent Labbé et al.
Aquaculture Europe, Sep 2023, Vienna, Austria. ⟨10.15454/1.5572329612068406E12)⟩
Communication dans un congrès hal-04256795 v1

Impact de la durée de mise au froid des œillés de truite arc-en-ciel (Projet FEAMP EpiCOOL)

Jérôme Bugeon , Lucie Marandel , Simon Pouil , Elodie Harte , Michaël Marchand et al.
Journées techniques du SYSAAF, SYSAAF, Oct 2023, Rennes, France
Communication dans un congrès hal-04256478 v1
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UNDERSTANDING MOLECULAR MECHANISMS OF DISEASE RESISTANCE IN CONSTRASTED RAINBOW TROUT ISOGENIC LINES

Valentin Thomas , Thomas C. Clark , Audrey Laurent , Diego Perojil Morata , Mathieu Charles et al.
International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile
Communication dans un congrès hal-03778975 v1
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GENETIC PARAMETERS AND GENOME-WIDE ASSOCIATION STUDY OF RESISTANCE TO ACUTE HYPERTHERMIA IN RAINBOW TROUT

Henri Lagarde , Delphine Lallias , Pierre Patrice , Martin Prchal , Yoannah François et al.
World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands
Communication dans un congrès hal-03779084 v1
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A NEW 665K SNP ARRAY USED FOR DETECTING SIGNATURES OF POSITIVE SELECTION IN RAINBOW TROUT (ONCORHYNCHUS MYKISS)

Florence Phocas , Katy Paul , Audrey Dehaullon , Maria Bernard , Gwendal Restoux et al.
International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile
Communication dans un congrès hal-03778981 v1

Mitochondrial genomes long read sequencing methodology applied to multispecies for the identification of genetic variants

Sophie Dhorne-Pollet , Caroline Morgenthaler , Delphine Lallias , Aurélien Capitan , Nicolas Pollet et al.
13th World Annual Meeting of the World Mitochondria Society (WMS), Oct 2022, Berlin, Germany
Communication dans un congrès hal-04726385 v1
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GENOME-WIDE ASSOCIATION STUDY OF HYPOXIA STRESS TOLERANCE IN RAINBOW TROUT

Martin Prchal , Delphine Lallias , Henri Lagarde , Jonathan D’ambrosio , Pierre Patrice et al.
Aquaculture Europe 2021, Oct 2021, Funchal (Madeira), Portugal
Communication dans un congrès hal-03778912 v1
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IMPACT OF TEMPERATURE REGIME DURING EMBRYONIC DEVELOPMENT ON GENOMEWIDE PATTERNS OF DNA METHYLATION IN LIVER SAMPLES OF JUVENILE RAINBOW TROUT

Delphine Lallias , Anne Aubert-Frambourg , Aurélie Chaulot-Talmon , Luc Jouneau , Laurent Labbé et al.
Aquaculture Europe 2021, Oct 2021, Funchal (Madeira), Portugal
Communication dans un congrès hal-03778951 v1

Lignées isogéniques de truite arc-en-ciel : modèle pour étudier la résistance à la SHV

Delphine Lallias , Valentin Thomas , Florence Phocas , Edwige Quillet , Pierre Boudinot
Journées techniques du SYSAAF, SYSAAF, Oct 2021, Rennes, France
Communication dans un congrès hal-04256390 v1
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Relationship between early or late resistance to acute temperature or hypoxia stresses in six rainbow trout isogenic lines

Henri Lagarde , Martin Prchal , Simon Pouil , Lionel Goardon , Marjorie Bideau et al.
Aquaculture Europe 2021, Oct 2021, Funchal (Madeira), Portugal
Communication dans un congrès hal-03778876 v1

Sources de variation de la méthylation de l'ADN chez la truite arc-en-ciel : effets combinés de la température et du patrimoine génétique

Delphine Lallias , Aurélie Chaulot-Talmon , Anne Aubert-Frambourg , Luc Jouneau , Laurent Labbé et al.
6ème journée d'animation scientifique autour de l'épigénétique (épiPHASE), Jun 2021, Zoom, France. pp.1031-1052, ⟨10.1080/15592294.2020.1834924⟩
Communication dans un congrès hal-03779185 v1
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Analysis of genomewide patterns of DNA methylation in response to an early temperature stress in rainbow trout

Delphine Lallias , Edwige Quillet , Maria Bernard , Céline Ciobotaru , Nicolas Dechamp et al.
Aquaculture Europe 2019, Oct 2019, Berlin, Germany
Communication dans un congrès hal-02950585 v1
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Analysis of genetic variability of DNA methylation in response to an early temperature stress in rainbow trout

Delphine Lallias , Edwige Quillet , Maria Bernard , Nicolas Dechamp , Jean-Michel Le Calvez et al.
13. International Symposium of Genetics in Aquaculture (ISGA XIII), Jul 2018, Cairns, Australia
Communication dans un congrès hal-02737362 v1
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Analysis of genetic variability of global DNA methylation in response to an early temperature stress in rainbow trout

Delphine Lallias , Edwige Quillet , Nicolas Dechamp , Jean-Michel Le Calvez , Marjorie Bideau et al.
World Aquaculture 2018, European Aquaculture Society (EAS). BEL., Aug 2018, Montpellier, France. 848 p
Communication dans un congrès hal-02734994 v1
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Etude de la variabilité génétique de la méthylation de l'ADN en réponse à un stress de température précoce chez la truite arc-en-ciel

Delphine Lallias , Edwige Quillet , Nicolas Dechamp , Maria Bernard , Jean-Michel Le Calvez et al.
4. Journée de Séminaires du Département Phase sur l'Epigénétique EpiPhase, May 2018, Nouzilly, France
Communication dans un congrès hal-02790958 v1
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Indirect criteria to improve feed efficiency in rainbow trout: Links with biochemistry and immune activity

Simon Pouil , Fany Blanc , Thierry Kerneis , Floriane Colon , Mathilde Dupont-Nivet et al.
International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile.
Poster de conférence hal-03779103 v1
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Impact de la durée de stockage au froid des oeufs embryonnés de truite arc-en-ciel

Elodie Harte , Michael Marchand , Tina Terrenne , Lionel Goardon , Laurent Labbé et al.
7. journée d'animation scientifique autour de l'épigénétique (épiPHASE), Jun 2022, Rennes, France. 2022
Poster de conférence hal-03779238 v1
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Testing fat content or feeding behaviour as indirect selection criteria for feed efficiency using trout isogenic lines

Simon Pouil , Thierry Kerneis , Edwige Quillet , Delphine Lallias , Laurent Labbé et al.
World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands.
Poster de conférence hal-03778994 v1
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IMPROVING RESISTANCE TO ACUTE HYPERTHERMIA BY GENOMIC SELECTION TO ADAPT RAINBOW TROUT LINES TO CLIMATE CHANGE

Henri Lagarde , Delphine Lallias , Pierre Patrice , Martin Prchal , Yoannah François et al.
International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile.
Poster de conférence hal-03778988 v1
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In-depth genomic characterization of a unique collection of rainbow trout isogenic lines

Delphine Lallias , Mekki Boussaha , Maria Bernard , Antoine Peigné , Céline Ciobotaru et al.
Aquaculture Europe 2019, Oct 2019, Berlin, Germany
Poster de conférence hal-02950600 v1
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Etude de la variabilité génétique de la méthylation de l'ADN en réponse à un stress de température précoce chez la truite arc-en-ciel

Delphine Lallias , A. Fricot , Jingwei Liu , Lucie Marandel , Nicolas Dechamp et al.
5. Journée d'Animation Scientifique du réseau épiPhase, Jun 2019, Toulouse, France. 2019
Poster de conférence hal-02734890 v1
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In-depth genomic characterization of a unique collection of rainbow trout isogenic lines

Delphine Lallias , Mekki Boussaha , Maria Bernard , Céline Ciobotaru , Nicolas Dechamp et al.
AQUA 2018, Aug 2018, Montpellier, France. , 2018, AQUA 2008 Abstracts Website
Poster de conférence hal-02735893 v1

AMETHYST : Analyse de la METHYlation après un stress de température chez la truite

Delphine Lallias , Edwige Quillet , Mathilde Dupont-Nivet , Isabelle Leguen , Patrick Prunet et al.
3. Journée de Séminaires du Département Phase sur l'Epigénétique EpiPhase, May 2017, Jouy-en-Josas, France. 2017
Poster de conférence hal-01605305 v1

AMETHYST : Analyse de la METHYlation après un stress de température chez la truite

Delphine Lallias , Edwige Quillet , Isabelle Leguen , Patrick Prunet , Lionel Goardon et al.
2. Réunion d'Animation épiPHASE, Mar 2016, Saint-Pée-sur-Nivelle, France. , 2016
Poster de conférence hal-02799659 v1
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Épigénétique chez les poissons d'élevage

Audrey Laurent , Delphine Lallias , Lucie Marandel , Catherine Labbé , Pierre Boudry
Épigénétique - Mécanismes moléculaires, biologie du développement et réponses à l'environnement, QUAE, pp.163, 2022, 978-2-7592-3769-2
Chapitre d'ouvrage hal-04692663 v1

Metabarcoding marine sediments: preparation of amplicon libraries

Vera G. Fonseca , Delphine Lallias
Marine Genomics, 1452, Springer Protocols, Humana Press, 263 p., 2016, Methods in Molecular Biology, 978-1493937721. ⟨10.1007/978-1-4939-3774-5_12⟩
Chapitre d'ouvrage hal-01532582 v1